Wall clock time and date at job start Mon Mar 30 2020 20:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47052 * 2 1 4 4 C 1.36743 * 127.13681 * 272.67543 * 3 2 1 5 5 C 1.50701 * 126.34551 * 0.06074 * 4 3 2 6 6 F 1.39899 * 109.46989 * 209.99661 * 5 4 3 7 7 F 1.39892 * 109.47428 * 329.99428 * 5 4 3 8 8 N 1.30297 * 107.30828 * 180.02562 * 4 3 2 9 9 N 1.28528 * 110.05121 * 359.72895 * 8 4 3 10 10 C 1.31220 * 109.86282 * 0.45149 * 9 8 4 11 11 N 1.38569 * 126.47996 * 179.81989 * 10 9 8 12 12 C 1.46904 * 111.00125 * 289.16987 * 11 10 9 13 13 C 1.46909 * 110.99828 * 53.11840 * 11 10 9 14 14 H 1.08997 * 109.46547 * 300.00556 * 13 11 10 15 15 C 1.52997 * 109.46844 * 60.00036 * 13 11 10 16 16 C 1.50701 * 109.47009 * 180.02562 * 13 11 10 17 17 H 1.07995 * 119.99933 * 354.34781 * 16 13 11 18 18 C 1.37875 * 119.99516 * 174.35090 * 16 13 11 19 19 N 1.31518 * 119.99905 * 155.91401 * 18 16 13 20 20 Si 1.86798 * 120.00362 * 335.90975 * 18 16 13 21 21 H 1.48498 * 109.47254 * 180.02562 * 20 18 16 22 22 H 1.48499 * 109.47287 * 300.00391 * 20 18 16 23 23 H 1.48509 * 109.46747 * 60.00447 * 20 18 16 24 24 H 1.08995 * 109.47026 * 300.00408 * 1 2 3 25 25 H 1.09003 * 109.47187 * 60.00122 * 1 2 3 26 26 H 1.08996 * 109.46978 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47304 * 240.00305 * 2 1 3 28 28 H 1.09003 * 109.47187 * 119.99878 * 2 1 3 29 29 H 1.09003 * 109.47364 * 89.99994 * 5 4 3 30 30 H 1.08993 * 109.47532 * 189.41121 * 12 11 10 31 31 H 1.08996 * 109.46664 * 309.41030 * 12 11 10 32 32 H 1.09000 * 109.47046 * 69.41041 * 12 11 10 33 33 H 1.09005 * 109.46790 * 172.84729 * 15 13 11 34 34 H 1.08997 * 109.47611 * 292.85225 * 15 13 11 35 35 H 1.09006 * 109.47173 * 52.85529 * 15 13 11 36 36 H 0.97000 * 120.00071 * 354.89527 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2455 2.1765 -1.0889 5 6 2.0379 1.7955 -2.5321 6 9 2.9459 2.4948 -3.3343 7 9 2.2432 0.4202 -2.6855 8 7 2.6740 3.3251 -0.6475 9 7 2.7272 3.3116 0.6367 10 6 2.3414 2.1409 1.0866 11 7 2.2698 1.7514 2.4145 12 6 3.6123 1.5840 2.9872 13 6 1.4772 2.7059 3.2011 14 1 1.9403 3.6913 3.1502 15 6 0.0580 2.7795 2.6342 16 6 1.4224 2.2505 4.6366 17 1 1.8471 1.2982 4.9175 18 6 0.8299 3.0498 5.5911 19 7 0.3529 2.5140 6.6935 20 14 0.7047 4.8936 5.3189 21 1 0.0316 5.5215 6.4841 22 1 2.0669 5.4652 5.1675 23 1 -0.0834 5.1598 4.0886 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.0203 2.0466 -2.8315 30 1 3.5327 1.1205 3.9704 31 1 4.2095 0.9487 2.3332 32 1 4.0906 2.5588 3.0827 33 1 -0.5643 3.3878 3.2906 34 1 0.0861 3.2283 1.6413 35 1 -0.3589 1.7746 2.5670 36 1 0.3507 1.5502 6.8027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121698578.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:15 Heat of formation + Delta-G solvation = -26.327812 kcal Electronic energy + Delta-G solvation = -22416.108716 eV Core-core repulsion = 18800.442077 eV Total energy + Delta-G solvation = -3615.666639 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.24539 -48.27065 -44.23211 -39.04905 -36.80087 -35.02346 -32.46475 -32.03883 -31.30741 -28.15999 -26.96046 -26.20696 -25.01365 -23.50307 -22.33392 -21.23412 -19.62124 -18.86089 -18.64328 -18.23088 -17.68235 -17.56289 -16.82807 -16.17618 -15.53573 -15.41603 -15.21673 -15.03215 -14.52462 -14.36772 -14.28858 -14.11854 -14.03465 -13.64551 -13.35978 -13.15282 -12.86926 -12.61534 -12.56675 -12.47319 -12.29363 -12.02587 -11.86219 -11.74377 -11.31439 -11.12796 -10.50116 -10.43096 -9.72140 -8.78531 -6.35582 0.35697 0.95973 1.44196 1.46214 1.48300 1.68024 2.21638 2.42521 2.77487 2.88637 2.97927 3.24023 3.65600 3.75117 3.88252 3.99319 4.18859 4.29357 4.36373 4.42622 4.47851 4.55275 4.59135 4.64989 4.75175 4.87638 4.98200 4.99298 5.12237 5.27367 5.44708 5.71132 5.73531 6.06957 6.36984 6.63695 7.33428 7.39616 8.60590 Molecular weight = 274.13amu Principal moments of inertia in cm(-1) A = 0.028989 B = 0.005648 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.657145 B = 4956.029264 C = 5262.183401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.090 3.910 3 N -0.443 5.443 4 C 0.089 3.911 5 C 0.384 3.616 6 F -0.185 7.185 7 F -0.187 7.187 8 N -0.281 5.281 9 N -0.350 5.350 10 C 0.378 3.622 11 N -0.461 5.461 12 C 0.056 3.944 13 C 0.209 3.791 14 H -0.003 1.003 15 C -0.127 4.127 16 C -0.596 4.596 17 H 0.047 0.953 18 C 0.006 3.994 19 N -0.920 5.920 20 Si 1.059 2.941 21 H -0.281 1.281 22 H -0.274 1.274 23 H -0.260 1.260 24 H 0.043 0.957 25 H 0.072 0.928 26 H 0.107 0.893 27 H 0.129 0.871 28 H 0.100 0.900 29 H 0.190 0.810 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.025 0.975 33 H 0.051 0.949 34 H 0.024 0.976 35 H 0.057 0.943 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 -6.640 -18.922 20.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.030 4.030 3 N -0.135 5.135 4 C -0.181 4.181 5 C 0.328 3.672 6 F -0.166 7.166 7 F -0.168 7.168 8 N -0.123 5.123 9 N -0.195 5.195 10 C 0.021 3.979 11 N -0.187 5.187 12 C -0.091 4.091 13 C 0.102 3.898 14 H 0.014 0.986 15 C -0.186 4.186 16 C -0.634 4.634 17 H 0.065 0.935 18 C -0.196 4.196 19 N -0.554 5.554 20 Si 0.883 3.117 21 H -0.207 1.207 22 H -0.200 1.200 23 H -0.185 1.185 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.126 0.874 27 H 0.147 0.853 28 H 0.118 0.882 29 H 0.207 0.793 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.232 -4.358 -18.190 18.706 hybrid contribution 0.696 -2.083 -0.019 2.196 sum 0.464 -6.441 -18.209 19.320 Atomic orbital electron populations 1.22142 0.92296 1.05056 1.02581 1.22481 0.97273 0.76455 1.06818 1.46586 1.47638 1.14948 1.04351 1.25807 1.08204 0.90620 0.93435 1.19763 0.95566 0.72960 0.78881 1.93058 1.71324 1.78878 1.73380 1.92974 1.96582 1.31755 1.95467 1.73903 1.16206 1.18741 1.03482 1.74695 1.22489 1.19038 1.03234 1.22842 0.98069 0.87177 0.89820 1.59070 1.16601 1.48392 0.94662 1.22191 0.85865 1.00403 1.00685 1.19494 0.89867 0.88677 0.91744 0.98589 1.21988 0.97908 1.00943 0.97711 1.21868 1.42646 1.06581 0.92314 0.93513 1.26539 0.91784 1.08518 0.92790 1.70954 1.40478 1.13695 1.30250 0.83814 0.78118 0.72907 0.76890 1.20658 1.19970 1.18519 0.93808 0.90895 0.87419 0.85281 0.88193 0.79329 0.89860 0.90946 0.95600 0.93044 0.95677 0.92446 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 10.24 71.98 0.74 -2.22 16 2 C 0.09 1.87 6.59 86.38 0.57 2.44 16 3 N -0.44 -12.96 2.81 -514.85 -1.45 -14.41 16 4 C 0.09 2.52 7.67 137.64 1.05 3.58 16 5 C 0.38 6.81 5.78 71.24 0.41 7.22 16 6 F -0.19 -4.07 17.28 44.97 0.78 -3.29 16 7 F -0.19 -3.03 14.81 44.97 0.67 -2.36 16 8 N -0.28 -10.41 12.12 -49.53 -0.60 -11.01 16 9 N -0.35 -14.68 11.97 -58.01 -0.69 -15.37 16 10 C 0.38 14.33 5.20 260.11 1.35 15.69 16 11 N -0.46 -18.82 4.66 -710.99 -3.31 -22.13 16 12 C 0.06 2.13 9.11 127.69 1.16 3.29 16 13 C 0.21 9.84 1.55 44.17 0.07 9.91 16 14 H 0.00 -0.18 6.57 -2.39 -0.02 -0.19 16 15 C -0.13 -5.56 8.65 71.98 0.62 -4.94 16 16 C -0.60 -31.81 8.06 25.60 0.21 -31.60 16 17 H 0.05 2.66 6.88 -2.91 -0.02 2.64 16 18 C 0.01 0.34 5.17 84.65 0.44 0.78 16 19 N -0.92 -54.47 13.70 21.45 0.29 -54.18 16 20 Si 1.06 50.07 26.47 68.60 1.82 51.89 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.26 -11.50 6.23 99.48 0.62 -10.88 16 24 H 0.04 1.10 7.00 -2.39 -0.02 1.08 16 25 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.13 1.98 5.89 -2.39 -0.01 1.97 16 28 H 0.10 2.24 8.14 -2.39 -0.02 2.23 16 29 H 0.19 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.08 3.31 6.55 -2.39 -0.02 3.30 16 31 H 0.07 2.34 8.06 -2.39 -0.02 2.32 16 32 H 0.03 1.03 8.13 -2.39 -0.02 1.01 16 33 H 0.05 2.32 5.58 -2.38 -0.01 2.31 16 34 H 0.02 1.02 7.48 -2.39 -0.02 1.01 16 35 H 0.06 2.39 7.00 -2.38 -0.02 2.37 16 36 H 0.26 15.50 8.73 -92.71 -0.81 14.69 16 Total: -1.00 -68.35 302.71 5.10 -63.25 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: 0.98 Total: 3.48 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 6.62 Total: 4.14 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -5.76 Total: -117.10 kcal Atomic # 9 Polarization: -7.10 SS G_CDS: 1.44 Total: -5.66 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 1.82 Total: 51.89 kcal Total: -68.35 5.10 -63.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121698578.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.925 kcal (2) G-P(sol) polarization free energy of solvation -68.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds