Wall clock time and date at job start Mon Mar 30 2020 20:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38380 * 119.84948 * 2 1 4 4 C 1.37925 * 120.15498 * 179.76724 * 3 2 1 5 5 C 1.39649 * 119.84198 * 0.44233 * 4 3 2 6 6 C 1.47727 * 120.15181 * 179.81052 * 5 4 3 7 7 O 1.21462 * 120.00463 * 179.72437 * 6 5 4 8 8 O 1.34715 * 119.99550 * 359.72606 * 6 5 4 9 9 C 1.45196 * 116.99791 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47356 * 330.00347 * 9 8 6 11 11 C 1.50706 * 109.47154 * 209.99935 * 9 8 6 12 12 H 1.07998 * 119.99604 * 0.02562 * 11 9 8 13 13 C 1.37880 * 119.99702 * 179.97438 * 11 9 8 14 14 N 1.31509 * 120.00290 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99565 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46990 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47195 * 120.00324 * 15 13 11 18 18 H 1.48502 * 109.47059 * 240.00089 * 15 13 11 19 19 C 1.52999 * 109.47338 * 90.00221 * 9 8 6 20 20 C 1.53006 * 117.49429 * 8.74574 * 19 9 8 21 21 C 1.53006 * 117.49558 * 300.08906 * 19 9 8 22 22 C 1.39610 * 119.70174 * 359.54091 * 5 4 3 23 23 C 1.37968 * 119.84831 * 0.24725 * 22 5 4 24 24 C 1.50699 * 119.92497 * 180.02562 * 23 22 5 25 25 H 1.09008 * 109.46847 * 270.01703 * 1 2 3 26 26 H 1.08993 * 109.47234 * 30.01808 * 1 2 3 27 27 H 1.08998 * 109.47421 * 150.02462 * 1 2 3 28 28 H 1.08005 * 119.92456 * 0.02562 * 3 2 1 29 29 H 1.07991 * 120.08330 * 180.25571 * 4 3 2 30 30 H 0.97003 * 120.00335 * 179.97438 * 14 13 11 31 31 H 1.09001 * 115.55589 * 154.41453 * 19 9 8 32 32 H 1.08997 * 117.50166 * 359.97438 * 20 19 9 33 33 H 1.09002 * 117.49943 * 145.02659 * 20 19 9 34 34 H 1.09004 * 117.49360 * 214.97451 * 21 19 9 35 35 H 1.08999 * 117.50000 * 359.96965 * 21 19 9 36 36 H 1.07997 * 120.07620 * 180.27599 * 22 5 4 37 37 H 1.08998 * 109.47133 * 90.00163 * 24 23 22 38 38 H 1.08998 * 109.46741 * 210.00250 * 24 23 22 39 39 H 1.09001 * 109.46812 * 330.00029 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5750 1.2076 0.0048 5 6 4.2764 0.0000 0.0004 6 6 5.7536 -0.0001 0.0013 7 8 6.3610 -1.0520 0.0025 8 8 6.4272 1.1666 0.0009 9 6 7.8772 1.0906 0.0024 10 1 8.1929 0.1833 0.5174 11 6 8.4425 2.2938 0.7122 12 1 7.7784 3.0406 1.1216 13 6 9.8075 2.4405 0.8399 14 7 10.6161 1.5308 0.3418 15 14 10.5083 3.9316 1.7204 16 1 9.3967 4.8000 2.1844 17 1 11.3094 3.4855 2.8884 18 1 11.3758 4.6948 0.7876 19 6 8.3880 1.0625 -1.4395 20 6 7.3721 1.3215 -2.5539 21 6 7.9219 -0.0898 -2.3317 22 6 3.5752 -1.2072 0.0008 23 6 2.1955 -1.2000 0.0004 24 6 1.4369 -2.5021 0.0014 25 1 -0.3633 0.0003 1.0278 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3634 -0.8902 -0.5134 28 1 1.6521 2.1334 0.0004 29 1 4.1113 2.1449 0.0090 30 1 11.5765 1.6342 0.4313 31 1 9.4019 1.4345 -1.5865 32 1 6.3398 1.5114 -2.2599 33 1 7.7178 1.8634 -3.4342 34 1 8.6293 -0.4756 -3.0659 35 1 7.2518 -0.8281 -1.8913 36 1 4.1115 -2.1446 0.0019 37 1 1.2537 -2.8150 1.0293 38 1 0.4852 -2.3684 -0.5129 39 1 2.0231 -3.2645 -0.5115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123461835.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:21 Heat of formation + Delta-G solvation = -47.530116 kcal Electronic energy + Delta-G solvation = -20926.703862 eV Core-core repulsion = 17799.761850 eV Total energy + Delta-G solvation = -3126.942013 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.11257 -38.96773 -36.41755 -34.69534 -33.44034 -32.78915 -32.15830 -28.29737 -27.66332 -26.63297 -23.57955 -22.53886 -21.80819 -21.42401 -20.10063 -18.89298 -17.24951 -16.66461 -16.15157 -15.57329 -15.34800 -15.10267 -14.59597 -14.39731 -13.94110 -13.82648 -13.19110 -12.94735 -12.87517 -12.69881 -12.44885 -12.08205 -11.76000 -11.62038 -11.40212 -11.25846 -11.06004 -10.98686 -10.92247 -10.54722 -10.30220 -10.04991 -9.73488 -9.47207 -9.11731 -8.80305 -8.58383 -8.51062 -8.44049 -6.18902 -4.25925 0.91788 1.40515 3.03955 3.23792 3.30621 3.34918 3.61094 3.97417 4.33129 4.68232 4.78287 4.91695 4.94923 5.02427 5.14072 5.24246 5.33822 5.40148 5.51919 5.60357 5.67929 5.73297 5.77785 5.87528 6.01385 6.08602 6.13119 6.17055 6.38862 6.48078 6.52707 6.55519 6.71139 6.89455 6.95617 7.03822 7.19919 7.57202 7.59272 7.83388 8.11263 8.60642 8.87229 9.38511 10.88416 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.026064 B = 0.004512 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.008891 B = 6204.439745 C = 6648.993630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.065 4.065 3 C -0.132 4.132 4 C -0.064 4.064 5 C -0.115 4.115 6 C 0.495 3.505 7 O -0.513 6.513 8 O -0.346 6.346 9 C 0.248 3.752 10 H 0.053 0.947 11 C -0.517 4.517 12 H 0.071 0.929 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.909 3.091 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.281 1.281 19 C -0.116 4.116 20 C -0.194 4.194 21 C -0.211 4.211 22 C -0.057 4.057 23 C -0.105 4.105 24 C -0.114 4.114 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.128 0.872 29 H 0.141 0.859 30 H 0.266 0.734 31 H 0.130 0.870 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.135 0.865 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.620 -3.010 -1.911 17.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.065 4.065 3 C -0.150 4.150 4 C -0.082 4.082 5 C -0.116 4.116 6 C 0.340 3.660 7 O -0.405 6.405 8 O -0.262 6.262 9 C 0.195 3.805 10 H 0.071 0.929 11 C -0.555 4.555 12 H 0.089 0.911 13 C -0.138 4.138 14 N -0.522 5.522 15 Si 0.736 3.264 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.207 1.207 19 C -0.134 4.134 20 C -0.231 4.231 21 C -0.247 4.247 22 C -0.075 4.075 23 C -0.105 4.105 24 C -0.170 4.170 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.145 0.855 29 H 0.159 0.841 30 H 0.076 0.924 31 H 0.148 0.852 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.153 0.847 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.188 -3.329 -1.928 17.614 hybrid contribution 0.761 0.681 0.294 1.062 sum -16.428 -2.648 -1.633 16.720 Atomic orbital electron populations 1.20908 0.91188 1.02964 1.02489 1.19964 0.96059 0.92699 0.97793 1.20995 0.93926 0.97579 1.02526 1.21552 0.94041 0.98151 0.94457 1.19403 0.90739 0.94551 1.06919 1.21043 0.88340 0.83370 0.73238 1.90739 1.70229 1.33213 1.46273 1.86543 1.26414 1.31574 1.81656 1.20177 0.68961 0.99486 0.91853 0.92945 1.20985 0.91656 1.06764 1.36116 0.91094 1.24901 0.96375 0.97044 0.95530 1.69990 1.03735 1.33944 1.44554 0.86253 0.79010 0.81911 0.79190 1.19443 1.20756 1.20724 1.23022 0.99887 0.98729 0.91809 1.22803 0.99753 0.99180 1.01387 1.23155 1.04662 0.92040 1.04890 1.21145 0.93152 0.97666 0.95587 1.19635 0.93145 0.95173 1.02545 1.20831 0.99880 0.93922 1.02407 0.90912 0.91432 0.91025 0.85455 0.84146 0.92449 0.85233 0.89799 0.90418 0.90509 0.88857 0.84702 0.91139 0.91160 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.59 36.01 0.35 -0.58 16 2 C -0.07 -0.74 5.89 -104.53 -0.62 -1.35 16 3 C -0.13 -1.61 9.68 -39.64 -0.38 -2.00 16 4 C -0.06 -0.97 9.62 -39.17 -0.38 -1.34 16 5 C -0.11 -2.01 5.87 -104.98 -0.62 -2.63 16 6 C 0.50 10.79 6.85 34.61 0.24 11.03 16 7 O -0.51 -12.27 13.44 -19.24 -0.26 -12.53 16 8 O -0.35 -8.23 7.63 -40.53 -0.31 -8.54 16 9 C 0.25 6.62 2.41 -27.88 -0.07 6.55 16 10 H 0.05 1.56 7.16 -51.93 -0.37 1.19 16 11 C -0.52 -14.39 8.90 -34.44 -0.31 -14.70 16 12 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 13 C 0.06 1.75 5.20 -17.82 -0.09 1.66 16 14 N -0.88 -24.98 11.59 55.43 0.64 -24.34 16 15 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 C -0.12 -2.91 5.27 -90.61 -0.48 -3.38 16 20 C -0.19 -4.19 9.80 -26.69 -0.26 -4.45 16 21 C -0.21 -4.72 9.85 -26.69 -0.26 -4.99 16 22 C -0.06 -0.87 9.24 -39.17 -0.36 -1.23 16 23 C -0.10 -1.28 5.87 -104.68 -0.61 -1.90 16 24 C -0.11 -1.02 9.60 36.01 0.35 -0.67 16 25 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 26 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 27 H 0.07 0.48 5.93 -51.93 -0.31 0.17 16 28 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 29 H 0.14 2.13 7.61 -52.49 -0.40 1.73 16 30 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.13 3.52 6.46 -51.93 -0.34 3.18 16 32 H 0.08 1.78 6.91 -51.93 -0.36 1.42 16 33 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 34 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 35 H 0.09 2.17 5.36 -51.93 -0.28 1.89 16 36 H 0.14 2.04 7.65 -52.49 -0.40 1.63 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.50 5.93 -51.93 -0.31 0.20 16 39 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 LS Contribution 323.09 15.07 4.87 4.87 Total: -1.00 -30.34 323.09 -8.85 -39.18 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.26 Total: 5.41 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -3.51 Total: -19.98 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.64 Total: -24.34 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.57 Total: -21.07 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.34 -8.85 -39.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461835.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.348 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds