Wall clock time and date at job start Mon Mar 30 2020 20:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38380 * 119.84948 * 2 1 4 4 C 1.37925 * 120.15498 * 179.76724 * 3 2 1 5 5 C 1.39649 * 119.84198 * 0.44233 * 4 3 2 6 6 C 1.47727 * 120.15181 * 179.81052 * 5 4 3 7 7 O 1.21462 * 120.00463 * 179.72437 * 6 5 4 8 8 O 1.34715 * 119.99550 * 359.72606 * 6 5 4 9 9 C 1.45196 * 116.99791 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47356 * 330.00347 * 9 8 6 11 11 C 1.50706 * 109.47154 * 209.99935 * 9 8 6 12 12 H 1.07998 * 119.99604 * 0.02562 * 11 9 8 13 13 C 1.37880 * 119.99702 * 179.97438 * 11 9 8 14 14 N 1.31509 * 120.00290 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99565 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46990 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47195 * 120.00324 * 15 13 11 18 18 H 1.48502 * 109.47059 * 240.00089 * 15 13 11 19 19 C 1.52999 * 109.47338 * 90.00221 * 9 8 6 20 20 C 1.53006 * 117.49429 * 8.74574 * 19 9 8 21 21 C 1.53006 * 117.49558 * 300.08906 * 19 9 8 22 22 C 1.39610 * 119.70174 * 359.54091 * 5 4 3 23 23 C 1.37968 * 119.84831 * 0.24725 * 22 5 4 24 24 C 1.50699 * 119.92497 * 180.02562 * 23 22 5 25 25 H 1.09008 * 109.46847 * 270.01703 * 1 2 3 26 26 H 1.08993 * 109.47234 * 30.01808 * 1 2 3 27 27 H 1.08998 * 109.47421 * 150.02462 * 1 2 3 28 28 H 1.08005 * 119.92456 * 0.02562 * 3 2 1 29 29 H 1.07991 * 120.08330 * 180.25571 * 4 3 2 30 30 H 0.97003 * 120.00335 * 179.97438 * 14 13 11 31 31 H 1.09001 * 115.55589 * 154.41453 * 19 9 8 32 32 H 1.08997 * 117.50166 * 359.97438 * 20 19 9 33 33 H 1.09002 * 117.49943 * 145.02659 * 20 19 9 34 34 H 1.09004 * 117.49360 * 214.97451 * 21 19 9 35 35 H 1.08999 * 117.50000 * 359.96965 * 21 19 9 36 36 H 1.07997 * 120.07620 * 180.27599 * 22 5 4 37 37 H 1.08998 * 109.47133 * 90.00163 * 24 23 22 38 38 H 1.08998 * 109.46741 * 210.00250 * 24 23 22 39 39 H 1.09001 * 109.46812 * 330.00029 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5750 1.2076 0.0048 5 6 4.2764 0.0000 0.0004 6 6 5.7536 -0.0001 0.0013 7 8 6.3610 -1.0520 0.0025 8 8 6.4272 1.1666 0.0009 9 6 7.8772 1.0906 0.0024 10 1 8.1929 0.1833 0.5174 11 6 8.4425 2.2938 0.7122 12 1 7.7784 3.0406 1.1216 13 6 9.8075 2.4405 0.8399 14 7 10.6161 1.5308 0.3418 15 14 10.5083 3.9316 1.7204 16 1 9.3967 4.8000 2.1844 17 1 11.3094 3.4855 2.8884 18 1 11.3758 4.6948 0.7876 19 6 8.3880 1.0625 -1.4395 20 6 7.3721 1.3215 -2.5539 21 6 7.9219 -0.0898 -2.3317 22 6 3.5752 -1.2072 0.0008 23 6 2.1955 -1.2000 0.0004 24 6 1.4369 -2.5021 0.0014 25 1 -0.3633 0.0003 1.0278 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3634 -0.8902 -0.5134 28 1 1.6521 2.1334 0.0004 29 1 4.1113 2.1449 0.0090 30 1 11.5765 1.6342 0.4313 31 1 9.4019 1.4345 -1.5865 32 1 6.3398 1.5114 -2.2599 33 1 7.7178 1.8634 -3.4342 34 1 8.6293 -0.4756 -3.0659 35 1 7.2518 -0.8281 -1.8913 36 1 4.1115 -2.1446 0.0019 37 1 1.2537 -2.8150 1.0293 38 1 0.4852 -2.3684 -0.5129 39 1 2.0231 -3.2645 -0.5115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123461835.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:21 Heat of formation + Delta-G solvation = -62.464879 kcal Electronic energy + Delta-G solvation = -20927.351482 eV Core-core repulsion = 17799.761850 eV Total energy + Delta-G solvation = -3127.589633 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.68062 -40.26900 -38.24594 -36.55057 -34.91542 -34.45093 -33.12242 -30.12822 -28.72492 -27.70818 -25.47252 -23.95403 -23.22927 -22.89454 -21.65807 -20.67699 -19.01449 -18.42772 -17.79946 -17.43856 -16.71711 -16.33392 -16.11196 -15.71551 -15.25541 -15.07055 -14.61681 -14.36400 -14.11435 -13.69356 -13.55387 -13.37080 -13.31548 -13.06072 -12.83474 -12.78177 -12.72393 -12.37596 -12.25689 -12.23895 -11.96301 -11.89673 -11.45598 -11.38649 -11.08089 -10.51314 -10.47210 -9.87300 -9.61691 -8.28602 -6.45482 -0.29924 0.34833 1.40803 1.41597 1.55041 1.58077 1.93621 2.40427 2.74652 2.98877 3.11296 3.72292 3.83165 3.91843 4.00552 4.03130 4.20886 4.22972 4.24590 4.29271 4.61259 4.70837 4.74092 4.79142 4.83348 4.84968 4.92444 4.96191 4.98777 5.18908 5.19997 5.24978 5.31002 5.36615 5.39727 5.49419 5.53555 5.60896 5.84256 5.95157 6.05651 6.58945 6.92070 7.24843 8.79351 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.026064 B = 0.004512 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.008891 B = 6204.439745 C = 6648.993630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.052 4.052 3 C -0.127 4.127 4 C -0.074 4.074 5 C -0.148 4.148 6 C 0.490 3.510 7 O -0.547 6.547 8 O -0.350 6.350 9 C 0.254 3.746 10 H 0.004 0.996 11 C -0.545 4.545 12 H 0.067 0.933 13 C 0.019 3.981 14 N -0.913 5.913 15 Si 0.981 3.019 16 H -0.263 1.263 17 H -0.276 1.276 18 H -0.271 1.271 19 C -0.144 4.144 20 C -0.166 4.166 21 C -0.202 4.202 22 C -0.069 4.069 23 C -0.104 4.104 24 C -0.114 4.114 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.161 0.839 29 H 0.132 0.868 30 H 0.270 0.730 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.124 0.876 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.692 -2.000 -2.327 20.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.052 4.052 3 C -0.144 4.144 4 C -0.092 4.092 5 C -0.149 4.149 6 C 0.338 3.662 7 O -0.440 6.440 8 O -0.266 6.266 9 C 0.200 3.800 10 H 0.022 0.978 11 C -0.582 4.582 12 H 0.086 0.914 13 C -0.181 4.181 14 N -0.551 5.551 15 Si 0.804 3.196 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.196 1.196 19 C -0.163 4.163 20 C -0.203 4.203 21 C -0.239 4.239 22 C -0.088 4.088 23 C -0.104 4.104 24 C -0.170 4.170 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.106 0.894 28 H 0.178 0.822 29 H 0.150 0.850 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.142 0.858 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.287 -2.325 -2.351 20.554 hybrid contribution 1.571 0.284 0.437 1.655 sum -18.716 -2.042 -1.914 18.924 Atomic orbital electron populations 1.21036 0.87764 1.04695 1.03957 1.20497 0.98386 0.91708 0.94593 1.21356 0.92497 0.99581 1.00994 1.21576 0.95586 0.96792 0.95242 1.19278 0.87787 0.96668 1.11207 1.21911 0.90163 0.82224 0.71930 1.90700 1.71330 1.33938 1.48072 1.86524 1.24965 1.32897 1.82238 1.19791 0.70600 0.97018 0.92557 0.97791 1.21253 0.92463 1.07185 1.37305 0.91432 1.25816 0.96362 1.00021 0.95893 1.70116 1.04119 1.35691 1.45139 0.85162 0.78288 0.78078 0.78043 1.18687 1.20185 1.19608 1.22731 0.99756 1.01858 0.91965 1.22865 0.98837 0.98241 1.00337 1.23140 1.04568 0.92027 1.04192 1.21208 0.94700 0.96352 0.96495 1.20033 0.91872 0.97440 1.01008 1.20930 1.00478 0.91956 1.03594 0.89289 0.89768 0.89359 0.82171 0.85014 0.92091 0.87471 0.89612 0.87576 0.88525 0.90096 0.85820 0.89881 0.88550 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 9.59 71.24 0.68 -0.54 16 2 C -0.05 -0.99 5.89 -19.80 -0.12 -1.11 16 3 C -0.13 -2.76 9.68 22.23 0.22 -2.54 16 4 C -0.07 -2.23 9.62 22.54 0.22 -2.01 16 5 C -0.15 -5.39 5.87 -20.10 -0.12 -5.51 16 6 C 0.49 22.82 6.85 70.33 0.48 23.30 16 7 O -0.55 -28.26 13.44 19.96 0.27 -27.99 16 8 O -0.35 -17.70 7.63 -56.24 -0.43 -18.13 16 9 C 0.25 14.41 2.41 29.85 0.07 14.48 16 10 H 0.00 0.28 7.16 -2.39 -0.02 0.27 16 11 C -0.54 -31.65 8.90 25.60 0.23 -31.43 16 12 H 0.07 3.85 7.81 -2.91 -0.02 3.83 16 13 C 0.02 1.07 5.20 84.66 0.44 1.51 16 14 N -0.91 -53.40 11.59 21.45 0.25 -53.15 16 15 Si 0.98 43.53 29.54 68.60 2.03 45.56 16 16 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 17 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 19 C -0.14 -7.55 5.27 -10.79 -0.06 -7.61 16 20 C -0.17 -7.17 9.80 30.62 0.30 -6.87 16 21 C -0.20 -9.31 9.85 30.62 0.30 -9.01 16 22 C -0.07 -2.14 9.24 22.54 0.21 -1.93 16 23 C -0.10 -2.32 5.87 -19.90 -0.12 -2.44 16 24 C -0.11 -1.68 9.60 71.24 0.68 -0.99 16 25 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.08 0.66 8.08 -2.39 -0.02 0.65 16 27 H 0.09 0.67 5.93 -2.39 -0.01 0.66 16 28 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 29 H 0.13 4.11 7.61 -2.91 -0.02 4.09 16 30 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 31 H 0.11 6.08 6.46 -2.39 -0.02 6.07 16 32 H 0.09 3.67 6.91 -2.39 -0.02 3.65 16 33 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 34 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16 35 H 0.08 3.94 5.36 -2.39 -0.01 3.93 16 36 H 0.12 3.97 7.65 -2.91 -0.02 3.95 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.10 0.94 5.93 -2.39 -0.01 0.92 16 39 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 Total: -1.00 -70.58 323.09 6.59 -63.99 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 1.05 Total: 22.42 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 3.42 Total: -32.69 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.25 Total: -53.15 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -0.16 Total: -46.12 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -70.58 6.59 -63.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461835.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.527 kcal (2) G-P(sol) polarization free energy of solvation -70.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds