Wall clock time and date at job start Mon Mar 30 2020 20:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46905 * 110.99596 * 2 1 4 4 C 1.50701 * 109.46840 * 66.05094 * 3 2 1 5 5 H 1.07997 * 120.00206 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99716 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00279 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99960 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47001 * 59.99618 * 8 6 4 10 10 H 1.48496 * 109.47033 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46733 * 300.00008 * 8 6 4 12 12 C 1.46900 * 110.99788 * 236.05234 * 2 1 3 13 13 C 1.50701 * 109.47012 * 293.94981 * 12 2 1 14 14 C 1.36108 * 119.58380 * 105.02564 * 13 12 2 15 15 C 1.40422 * 119.65067 * 179.97438 * 14 13 12 16 16 C 1.40739 * 121.35057 * 180.02562 * 15 14 13 17 17 C 1.36599 * 118.15997 * 179.97438 * 16 15 14 18 18 C 1.39304 * 119.94881 * 0.02562 * 17 16 15 19 19 N 1.31104 * 121.74669 * 0.02562 * 18 17 16 20 20 C 1.33705 * 121.32146 * 359.97438 * 19 18 17 21 21 C 1.40478 * 121.06249 * 180.29176 * 20 19 18 22 22 C 1.36343 * 119.73915 * 180.19942 * 21 20 19 23 23 F 1.35104 * 119.49478 * 179.77558 * 22 21 20 24 24 H 1.09005 * 109.46498 * 183.95441 * 1 2 3 25 25 H 1.09000 * 109.47029 * 303.94755 * 1 2 3 26 26 H 1.08998 * 109.47392 * 63.95374 * 1 2 3 27 27 H 1.09003 * 109.46619 * 186.04524 * 3 2 1 28 28 H 1.08995 * 109.47467 * 306.04669 * 3 2 1 29 29 H 0.96993 * 120.00389 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.46791 * 173.95121 * 12 2 1 31 31 H 1.08993 * 109.47499 * 53.95160 * 12 2 1 32 32 H 1.08000 * 120.17676 * 359.95255 * 14 13 12 33 33 H 1.07998 * 120.91817 * 359.96141 * 16 15 14 34 34 H 1.08000 * 120.02825 * 179.97438 * 17 16 15 35 35 H 1.07999 * 119.12759 * 179.97438 * 18 17 16 36 36 H 1.08004 * 120.12931 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0276 3.3491 1.5290 7 7 2.7135 4.0013 0.6159 8 14 1.5826 4.1868 3.1383 9 1 2.1734 3.4292 4.2706 10 1 2.1159 5.5727 3.1388 11 1 0.1054 4.2242 3.2849 12 6 1.9954 -0.7659 -1.1377 13 6 1.6370 -2.2203 -0.9730 14 6 0.6442 -2.7579 -1.7332 15 6 0.3094 -4.1132 -1.5813 16 6 -0.7105 -4.7060 -2.3490 17 6 -0.9819 -6.0296 -2.1482 18 6 -0.2566 -6.7528 -1.2040 19 7 0.6922 -6.1975 -0.4897 20 6 1.0078 -4.9065 -0.6368 21 6 2.0296 -4.3185 0.1271 22 6 2.3263 -2.9986 -0.0420 23 9 3.3068 -2.4370 0.6986 24 1 -0.3632 -1.0253 0.0709 25 1 -0.3633 0.5739 0.8525 26 1 -0.3634 0.4512 -0.9233 27 1 3.0797 1.3445 -0.1082 28 1 1.5611 1.9274 -0.8308 29 1 2.9887 4.9171 0.7782 30 1 3.0798 -0.6609 -1.1757 31 1 1.5611 -0.3871 -2.0628 32 1 0.1165 -2.1454 -2.4492 33 1 -1.2634 -4.1302 -3.0764 34 1 -1.7586 -6.5149 -2.7205 35 1 -0.4825 -7.7984 -1.0558 36 1 2.5755 -4.9089 0.8482 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141621483.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:37 Heat of formation + Delta-G solvation = 13.743839 kcal Electronic energy + Delta-G solvation = -20269.205271 eV Core-core repulsion = 17053.752742 eV Total energy + Delta-G solvation = -3215.452529 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.118 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.63944 -40.85873 -37.80688 -35.87761 -33.59529 -32.64230 -30.94883 -29.97939 -27.29230 -26.83416 -24.42891 -23.84526 -22.44096 -22.32194 -20.36290 -18.53749 -17.44763 -16.90026 -16.23907 -15.66754 -15.55715 -15.09963 -14.83717 -14.51338 -14.20603 -14.12841 -13.90624 -13.66011 -13.27646 -13.06095 -12.56394 -12.16873 -11.94763 -11.53739 -11.39292 -11.27722 -10.96591 -10.90603 -10.66371 -10.62023 -10.47365 -9.88499 -9.65371 -9.26894 -8.59364 -8.43969 -8.31698 -7.32004 -6.03346 -4.04627 0.23808 0.65966 1.84506 2.71622 3.34029 3.37857 3.41389 3.93035 3.99410 4.35219 4.43221 4.53778 4.60126 4.70275 4.76929 5.00892 5.03320 5.16030 5.32573 5.34620 5.64275 5.66584 5.74459 5.85990 5.94168 6.01056 6.10234 6.13694 6.24630 6.38003 6.41244 6.70215 6.79511 7.23611 7.28257 7.75739 7.76818 8.03839 8.14463 8.49935 9.02221 9.59430 11.07583 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.033567 B = 0.003921 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.957943 B = 7138.614020 C = 7345.277905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.533 5.533 3 C 0.194 3.806 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.088 3.912 13 C -0.090 4.090 14 C -0.070 4.070 15 C -0.113 4.113 16 C -0.048 4.048 17 C -0.186 4.186 18 C 0.131 3.869 19 N -0.476 5.476 20 C 0.149 3.851 21 C -0.150 4.150 22 C 0.159 3.841 23 F -0.118 7.118 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.012 0.988 27 H 0.032 0.968 28 H -0.008 1.008 29 H 0.262 0.738 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.158 0.842 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.412 -18.568 -7.678 21.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.257 5.257 3 C 0.069 3.931 4 C -0.546 4.546 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.041 4.041 13 C -0.091 4.091 14 C -0.089 4.089 15 C -0.115 4.115 16 C -0.074 4.074 17 C -0.206 4.206 18 C -0.041 4.041 19 N -0.184 5.184 20 C 0.027 3.973 21 C -0.170 4.170 22 C 0.137 3.863 23 F -0.096 7.096 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.031 0.969 27 H 0.050 0.950 28 H 0.010 0.990 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.175 0.825 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.573 -18.968 -6.588 20.839 hybrid contribution -0.819 1.510 -0.399 1.764 sum -6.392 -17.458 -6.987 19.861 Atomic orbital electron populations 1.22251 0.88769 0.99552 1.00687 1.62163 1.07063 1.17985 1.38518 1.19755 0.95512 0.80986 0.96808 1.21102 1.34947 0.96892 1.01651 0.91880 1.24977 0.95254 0.97308 0.97003 1.69942 1.38264 1.11553 1.34138 0.86547 0.78675 0.78315 0.83812 1.20107 1.21343 1.20289 1.21047 1.01182 0.87871 0.93966 1.19942 0.96245 0.97352 0.95542 1.20785 0.95987 0.93131 0.99025 1.18823 0.98663 0.95110 0.98893 1.21458 0.94394 0.95023 0.96556 1.21833 1.02354 0.95343 1.01064 1.22932 0.90343 1.00140 0.90730 1.68009 1.15655 1.10534 1.24230 1.18405 0.95001 0.89590 0.94266 1.20597 0.99885 0.93635 1.02888 1.17173 0.87690 0.90434 0.91007 1.91590 1.58537 1.85288 1.74176 0.93784 0.90518 0.96947 0.95027 0.98974 0.92844 0.89766 0.94206 0.84464 0.84349 0.84627 0.82502 0.83621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.14 60.07 0.55 1.25 16 2 N -0.53 -11.52 4.74 -245.82 -1.17 -12.68 16 3 C 0.19 5.04 4.72 -4.97 -0.02 5.02 16 4 C -0.51 -14.31 8.46 -34.44 -0.29 -14.61 16 5 H 0.06 1.77 7.12 -52.49 -0.37 1.40 16 6 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.75 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 C 0.09 1.56 4.73 -4.98 -0.02 1.53 16 13 C -0.09 -1.39 4.41 -104.89 -0.46 -1.85 16 14 C -0.07 -0.90 8.78 -39.53 -0.35 -1.25 16 15 C -0.11 -1.41 5.74 -106.79 -0.61 -2.03 16 16 C -0.05 -0.46 9.89 -39.23 -0.39 -0.85 16 17 C -0.19 -1.53 10.03 -39.78 -0.40 -1.93 16 18 C 0.13 1.26 11.15 -17.47 -0.19 1.07 16 19 N -0.48 -6.23 10.34 -10.99 -0.11 -6.34 16 20 C 0.15 2.08 6.60 -84.87 -0.56 1.52 16 21 C -0.15 -2.19 9.94 -39.42 -0.39 -2.58 16 22 C 0.16 2.55 7.18 -39.77 -0.29 2.26 16 23 F -0.12 -2.13 16.68 2.25 0.04 -2.09 16 24 H 0.04 0.76 6.87 -51.93 -0.36 0.40 16 25 H 0.08 1.61 6.76 -51.93 -0.35 1.26 16 26 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.03 0.88 7.93 -51.93 -0.41 0.47 16 28 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.08 1.53 7.85 -51.93 -0.41 1.13 16 31 H 0.04 0.65 7.88 -51.93 -0.41 0.25 16 32 H 0.14 1.48 7.96 -52.49 -0.42 1.06 16 33 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 35 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 36 H 0.15 1.94 8.06 -52.48 -0.42 1.51 16 LS Contribution 311.32 15.07 4.69 4.69 Total: -1.00 -31.74 311.32 -8.76 -40.50 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -4.40 Total: -3.88 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -3.53 Total: -10.95 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: -0.54 Total: -45.02 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.74 -8.76 -40.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141621483.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.244 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds