Wall clock time and date at job start Mon Mar 30 2020 20:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46795 * 2 1 4 4 H 1.08999 * 109.46996 * 305.00164 * 3 2 1 5 5 C 1.50695 * 109.47168 * 185.00363 * 3 2 1 6 6 H 1.08006 * 119.99865 * 240.00450 * 5 3 2 7 7 C 1.37877 * 120.00445 * 59.99843 * 5 3 2 8 8 N 1.31512 * 119.99605 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00145 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46804 * 90.00429 * 9 7 5 11 11 H 1.48504 * 109.47281 * 209.99973 * 9 7 5 12 12 H 1.48496 * 109.47501 * 330.00250 * 9 7 5 13 13 N 1.46499 * 109.46876 * 65.00311 * 3 2 1 14 14 C 1.38474 * 119.99972 * 274.99927 * 13 3 2 15 15 N 1.31936 * 120.14120 * 359.97438 * 14 13 3 16 16 C 1.32664 * 122.64007 * 180.02562 * 15 14 13 17 17 C 1.36059 * 121.99282 * 0.02562 * 16 15 14 18 18 C 1.40870 * 118.85471 * 359.97438 * 17 16 15 19 19 C 1.40190 * 122.13347 * 180.02562 * 18 17 16 20 20 C 1.36258 * 119.50874 * 180.02562 * 19 18 17 21 21 C 1.39482 * 120.94654 * 359.97438 * 20 19 18 22 22 F 1.35103 * 119.50008 * 179.97438 * 21 20 19 23 23 C 1.36496 * 120.99152 * 359.97438 * 21 20 19 24 24 C 1.40072 * 119.52285 * 0.02562 * 23 21 20 25 25 H 1.08997 * 109.47105 * 299.99695 * 1 2 3 26 26 H 1.08997 * 109.47223 * 60.00203 * 1 2 3 27 27 H 1.09004 * 109.46788 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47318 * 240.00814 * 2 1 3 29 29 H 1.08997 * 109.47223 * 119.99797 * 2 1 3 30 30 H 0.97000 * 119.99867 * 180.02562 * 8 7 5 31 31 H 0.97000 * 120.00489 * 94.99812 * 13 3 2 32 32 H 1.08005 * 119.00467 * 179.72123 * 16 15 14 33 33 H 1.07992 * 120.56761 * 180.02562 * 17 16 15 34 34 H 1.08001 * 120.24447 * 0.04560 * 19 18 17 35 35 H 1.07996 * 119.52071 * 180.02562 * 20 19 18 36 36 H 1.08000 * 120.23812 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4445 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4062 0.3377 -2.1733 9 14 6.0048 0.8817 -1.3819 10 1 6.5548 -0.3498 -0.7604 11 1 6.3829 0.9228 -2.8174 12 1 6.5568 2.0742 -0.6903 13 7 1.6524 2.0975 1.2518 14 6 0.4017 2.6798 1.3702 15 7 -0.4430 2.6470 0.3572 16 6 -1.6524 3.1890 0.4161 17 6 -2.1059 3.8201 1.5329 18 6 -1.2634 3.8981 2.6592 19 6 -1.6606 4.5313 3.8452 20 6 -0.8020 4.5760 4.9023 21 6 0.4659 4.0003 4.8213 22 9 1.2939 4.0621 5.8871 23 6 0.8826 3.3754 3.6815 24 6 0.0246 3.3117 2.5762 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0608 -2.9500 31 1 2.2719 2.1231 1.9979 32 1 -2.2947 3.1319 -0.4503 33 1 -3.0950 4.2530 1.5558 34 1 -2.6400 4.9802 3.9205 35 1 -1.1079 5.0634 5.8161 36 1 1.8668 2.9334 3.6324 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161053310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:04 Heat of formation + Delta-G solvation = -4.131398 kcal Electronic energy + Delta-G solvation = -20733.684050 eV Core-core repulsion = 17517.456393 eV Total energy + Delta-G solvation = -3216.227657 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.118 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.88458 -41.74468 -38.63622 -37.35711 -35.03208 -33.39601 -32.16944 -31.67347 -29.99154 -28.32720 -25.25769 -24.70682 -24.39266 -22.70302 -21.52665 -19.55747 -19.28080 -18.14271 -17.93842 -17.02964 -16.64789 -16.63022 -16.16014 -15.87400 -15.46212 -15.43117 -15.03202 -14.55546 -14.48489 -14.10672 -13.78833 -13.50334 -13.15711 -12.89441 -12.77292 -12.65708 -12.60765 -12.24593 -12.17460 -12.04236 -11.55609 -11.36385 -10.96549 -10.53760 -10.06746 -9.97499 -9.86101 -8.18082 -8.07049 -6.32677 -0.39456 -0.06324 1.07868 1.42029 1.42791 1.52614 2.11128 2.33191 2.58269 3.12481 3.23950 3.24898 3.59799 3.69507 3.93004 4.06850 4.12927 4.35484 4.53453 4.58471 4.63500 4.81116 4.88887 4.91646 4.94373 5.09411 5.14807 5.16112 5.32648 5.42989 5.50765 5.58346 5.63948 5.81603 5.87951 5.97066 6.11389 6.39914 6.74991 6.81840 7.36072 7.59109 8.88210 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.020305 B = 0.005465 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.664115 B = 5122.516218 C = 6100.349475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.120 4.120 3 C 0.290 3.710 4 H 0.017 0.983 5 C -0.554 4.554 6 H 0.061 0.939 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.964 3.036 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.270 1.270 13 N -0.692 5.692 14 C 0.427 3.573 15 N -0.580 5.580 16 C 0.124 3.876 17 C -0.232 4.232 18 C -0.007 4.007 19 C -0.082 4.082 20 C -0.122 4.122 21 C 0.066 3.934 22 F -0.148 7.148 23 C -0.126 4.126 24 C -0.150 4.150 25 H 0.038 0.962 26 H 0.044 0.956 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.025 0.975 30 H 0.265 0.735 31 H 0.402 0.598 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.179 0.821 35 H 0.168 0.832 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.968 7.512 11.667 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.159 4.159 3 C 0.186 3.814 4 H 0.035 0.965 5 C -0.592 4.592 6 H 0.079 0.921 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.789 3.211 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.195 1.195 13 N -0.319 5.319 14 C 0.178 3.822 15 N -0.301 5.301 16 C -0.023 4.023 17 C -0.256 4.256 18 C -0.013 4.013 19 C -0.100 4.100 20 C -0.141 4.141 21 C 0.046 3.954 22 F -0.127 7.127 23 C -0.146 4.146 24 C -0.156 4.156 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.238 0.762 32 H 0.183 0.817 33 H 0.185 0.815 34 H 0.196 0.804 35 H 0.185 0.815 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.655 6.925 10.526 16.501 hybrid contribution 1.482 0.023 0.662 1.624 sum -9.173 6.948 11.188 16.049 Atomic orbital electron populations 1.21631 0.96348 0.98505 1.00751 1.21783 0.94432 0.99206 1.00498 1.18375 0.92881 0.89057 0.81038 0.96468 1.21584 0.92025 1.39073 1.06541 0.92127 1.25635 1.02825 0.94390 0.95022 1.70020 1.36757 1.38161 1.09745 0.85473 0.79730 0.78604 0.77284 1.19875 1.20834 1.19470 1.45209 1.11939 1.57095 1.17694 1.18789 0.86986 0.87871 0.88558 1.67334 1.05999 1.26483 1.30296 1.22328 0.90426 0.91081 0.98467 1.21698 1.02518 1.08042 0.93333 1.18339 0.91637 0.95156 0.96148 1.21182 1.01135 0.97754 0.89933 1.21227 0.91294 0.99839 1.01762 1.17447 0.90528 1.03338 0.84049 1.91476 1.71679 1.94976 1.54542 1.20803 1.00489 1.00933 0.92419 1.18324 0.97142 1.06003 0.94167 0.94259 0.93690 0.94647 0.91003 0.95572 0.92553 0.76163 0.81677 0.81494 0.80374 0.81463 0.85091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.97 8.45 71.98 0.61 -4.36 16 2 C -0.12 -5.90 5.45 30.60 0.17 -5.73 16 3 C 0.29 14.70 2.25 44.25 0.10 14.80 16 4 H 0.02 1.01 7.55 -2.39 -0.02 1.00 16 5 C -0.55 -29.76 8.73 25.60 0.22 -29.54 16 6 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 7 C 0.02 1.18 5.29 84.66 0.45 1.63 16 8 N -0.91 -51.38 11.29 21.45 0.24 -51.13 16 9 Si 0.96 42.63 29.54 68.60 2.03 44.66 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 13 N -0.69 -29.65 5.08 -327.02 -1.66 -31.31 16 14 C 0.43 16.76 6.08 133.91 0.81 17.58 16 15 N -0.58 -22.83 6.41 -193.28 -1.24 -24.07 16 16 C 0.12 3.75 11.06 84.06 0.93 4.68 16 17 C -0.23 -5.70 9.87 22.41 0.22 -5.48 16 18 C -0.01 -0.20 5.75 -21.29 -0.12 -0.32 16 19 C -0.08 -1.56 9.81 22.28 0.22 -1.34 16 20 C -0.12 -2.38 9.92 22.11 0.22 -2.16 16 21 C 0.07 1.71 7.23 22.16 0.16 1.87 16 22 F -0.15 -3.92 17.24 44.97 0.78 -3.15 16 23 C -0.13 -3.78 9.48 22.31 0.21 -3.57 16 24 C -0.15 -4.94 5.75 -21.22 -0.12 -5.06 16 25 H 0.04 1.65 5.59 -2.39 -0.01 1.64 16 26 H 0.04 2.01 7.69 -2.39 -0.02 1.99 16 27 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.07 3.93 5.95 -2.39 -0.01 3.92 16 29 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 31 H 0.40 15.81 6.69 -92.71 -0.62 15.19 16 32 H 0.17 4.07 8.06 -2.91 -0.02 4.05 16 33 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 34 H 0.18 1.88 8.06 -2.91 -0.02 1.85 16 35 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.13 3.90 6.51 -2.91 -0.02 3.88 16 Total: -1.00 -62.93 300.55 4.71 -58.22 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.49 Total: 23.78 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 4.08 Total: -17.00 kcal Atomic # 7 Polarization: -103.85 SS G_CDS: -2.66 Total: -106.51 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.78 Total: -3.15 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -62.93 4.71 -58.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161053310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.089 kcal (2) G-P(sol) polarization free energy of solvation -62.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds