Wall clock time and date at job start Mon Mar 30 2020 20:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47116 * 2 1 4 4 H 1.08997 * 109.47533 * 179.69988 * 3 2 1 5 5 C 1.50702 * 109.47039 * 59.69472 * 3 2 1 6 6 H 1.07999 * 119.99920 * 244.30036 * 5 3 2 7 7 C 1.37875 * 119.99537 * 64.29573 * 5 3 2 8 8 N 1.31512 * 120.00208 * 8.33690 * 7 5 3 9 9 Si 1.86799 * 119.99920 * 188.05236 * 7 5 3 10 10 H 1.48505 * 109.46900 * 60.00629 * 9 7 5 11 11 H 1.48500 * 109.47204 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47294 * 300.00742 * 9 7 5 13 13 N 1.46504 * 109.46953 * 299.70221 * 3 2 1 14 14 C 1.38684 * 119.99481 * 274.16981 * 13 3 2 15 15 C 1.40226 * 119.23457 * 5.80142 * 14 13 3 16 16 C 1.36239 * 119.88469 * 179.97438 * 15 14 13 17 17 C 1.40965 * 118.30445 * 0.02562 * 16 15 14 18 18 C 1.40380 * 121.22900 * 180.02562 * 17 16 15 19 19 C 1.36145 * 119.67774 * 179.97438 * 18 17 16 20 20 C 1.39527 * 120.81970 * 0.02562 * 19 18 17 21 21 F 1.35096 * 119.51661 * 180.02562 * 20 19 18 22 22 C 1.36370 * 120.97044 * 359.97438 * 20 19 18 23 23 C 1.40463 * 119.75150 * 359.97438 * 22 20 19 24 24 N 1.31730 * 119.23234 * 185.53792 * 14 13 3 25 25 H 1.08992 * 109.47302 * 303.50136 * 1 2 3 26 26 H 1.09002 * 109.47302 * 63.50798 * 1 2 3 27 27 H 1.09002 * 109.46780 * 183.50512 * 1 2 3 28 28 H 1.09006 * 109.46821 * 240.00574 * 2 1 3 29 29 H 1.09000 * 109.47560 * 120.00383 * 2 1 3 30 30 H 0.97001 * 120.00055 * 3.64352 * 8 7 5 31 31 H 0.96998 * 120.00725 * 94.17050 * 13 3 2 32 32 H 1.07998 * 120.05378 * 359.97438 * 15 14 13 33 33 H 1.08003 * 120.84669 * 179.97438 * 16 15 14 34 34 H 1.07998 * 120.15785 * 359.95843 * 18 17 16 35 35 H 1.07999 * 119.58982 * 179.97438 * 19 18 17 36 36 H 1.08000 * 120.12452 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 0.0054 5 6 1.5315 2.1551 1.2267 6 1 0.8550 2.9907 1.1242 7 6 1.9298 1.7400 2.4797 8 7 2.8754 0.8343 2.6027 9 14 1.1318 2.4700 4.0028 10 1 -0.3266 2.1912 3.9794 11 1 1.7331 1.8614 5.2166 12 1 1.3549 3.9381 4.0233 13 7 1.5575 2.1310 -1.1998 14 6 2.2691 2.0372 -2.3864 15 6 3.3787 1.1824 -2.4538 16 6 4.0870 1.0797 -3.6130 17 6 3.6730 1.8484 -4.7197 18 6 4.3576 1.7895 -5.9438 19 6 3.9300 2.5452 -6.9924 20 6 2.8186 3.3794 -6.8661 21 9 2.4168 4.1175 -7.9238 22 6 2.1315 3.4598 -5.6909 23 6 2.5439 2.6933 -4.5885 24 7 1.8838 2.7491 -3.4256 25 1 -0.3633 0.5672 0.8569 26 1 -0.3634 0.4584 -0.9198 27 1 -0.3633 -1.0258 0.0628 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.3293 0.4970 1.8147 31 1 0.7404 2.6525 -1.1643 32 1 3.6713 0.6067 -1.5882 33 1 4.9444 0.4265 -3.6821 34 1 5.2195 1.1480 -6.0531 35 1 4.4580 2.4991 -7.9334 36 1 1.2728 4.1097 -5.6084 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161055708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:07 Heat of formation + Delta-G solvation = -1.050939 kcal Electronic energy + Delta-G solvation = -20272.056375 eV Core-core repulsion = 17055.962297 eV Total energy + Delta-G solvation = -3216.094078 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.118 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.89123 -40.48821 -37.74575 -35.75461 -33.23847 -32.80692 -31.08792 -29.73185 -28.83915 -26.14527 -24.24235 -23.39623 -22.78379 -22.05735 -20.09174 -18.41056 -17.73649 -17.04822 -16.94821 -15.63889 -15.59606 -15.33920 -14.49328 -14.26720 -14.04784 -13.78725 -13.69420 -13.57458 -13.21702 -12.92963 -12.80257 -12.27380 -11.87944 -11.71359 -11.49763 -11.22363 -10.95106 -10.54366 -10.43946 -10.27698 -10.23772 -10.09765 -9.30007 -9.13598 -8.80274 -8.53703 -8.20582 -7.10384 -6.61426 -4.35559 0.59059 1.11936 2.19315 3.06706 3.32619 3.33428 3.51855 3.73262 4.28031 4.36225 4.38503 4.62609 4.92494 4.96674 5.07938 5.11769 5.20216 5.39409 5.49143 5.91737 5.94196 6.00917 6.04045 6.08193 6.16684 6.20087 6.20600 6.48699 6.56343 6.61478 6.76691 6.87294 7.00468 7.12380 7.16379 7.57564 7.61522 8.16082 8.30399 8.56877 8.64938 9.33113 10.75178 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.034379 B = 0.003937 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.264113 B = 7110.365283 C = 7343.351029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.136 4.136 3 C 0.259 3.741 4 H 0.035 0.965 5 C -0.608 4.608 6 H 0.058 0.942 7 C 0.033 3.967 8 N -0.900 5.900 9 Si 1.067 2.933 10 H -0.285 1.285 11 H -0.281 1.281 12 H -0.287 1.287 13 N -0.677 5.677 14 C 0.445 3.555 15 C -0.208 4.208 16 C -0.027 4.027 17 C -0.179 4.179 18 C -0.037 4.037 19 C -0.195 4.195 20 C 0.127 3.873 21 F -0.143 7.143 22 C -0.161 4.161 23 C 0.218 3.782 24 N -0.575 5.575 25 H 0.068 0.932 26 H 0.036 0.964 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.074 0.926 30 H 0.271 0.729 31 H 0.401 0.599 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.143 -0.354 -13.224 13.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.175 4.175 3 C 0.156 3.844 4 H 0.053 0.947 5 C -0.646 4.646 6 H 0.076 0.924 7 C -0.174 4.174 8 N -0.534 5.534 9 Si 0.894 3.106 10 H -0.212 1.212 11 H -0.206 1.206 12 H -0.213 1.213 13 N -0.302 5.302 14 C 0.194 3.806 15 C -0.231 4.231 16 C -0.052 4.052 17 C -0.184 4.184 18 C -0.056 4.056 19 C -0.215 4.215 20 C 0.106 3.894 21 F -0.122 7.122 22 C -0.182 4.182 23 C 0.093 3.907 24 N -0.299 5.299 25 H 0.087 0.913 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.236 0.764 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.466 0.005 -11.312 11.407 hybrid contribution 0.341 -0.109 -1.917 1.950 sum 1.808 -0.104 -13.229 13.352 Atomic orbital electron populations 1.21539 0.96453 0.99246 1.01531 1.22024 0.96563 0.98964 0.99970 1.19030 0.94749 0.89003 0.81594 0.94724 1.21885 1.32752 1.18723 0.91236 0.92364 1.25730 0.95419 0.95240 1.00963 1.70834 1.21033 1.27701 1.33865 0.83564 0.75799 0.75772 0.75461 1.21175 1.20593 1.21314 1.45378 1.26297 1.51917 1.06570 1.18808 0.87760 0.87247 0.86811 1.21566 0.98177 1.03220 1.00134 1.21183 0.97419 0.95355 0.91264 1.18647 1.00201 1.03671 0.95870 1.20725 0.97628 0.96233 0.90968 1.20599 0.98774 1.01201 1.00954 1.17263 0.95311 0.92985 0.83838 1.91481 1.90195 1.75141 1.55355 1.20475 1.02924 1.03813 0.90977 1.18056 0.89838 0.91963 0.90865 1.67643 1.34419 1.28354 0.99445 0.91329 0.94511 0.95144 0.95237 0.90716 0.91796 0.76360 0.84198 0.84575 0.85010 0.85135 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.52 37.16 0.35 -2.19 16 2 C -0.14 -2.82 5.38 -26.73 -0.14 -2.97 16 3 C 0.26 5.72 1.55 -69.08 -0.11 5.61 16 4 H 0.04 0.82 5.98 -51.93 -0.31 0.51 16 5 C -0.61 -15.02 7.34 -34.44 -0.25 -15.27 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 7 C 0.03 0.83 5.22 -17.82 -0.09 0.74 16 8 N -0.90 -24.17 12.87 55.43 0.71 -23.46 16 9 Si 1.07 23.06 29.91 -169.99 -5.08 17.98 16 10 H -0.29 -5.93 7.11 56.52 0.40 -5.52 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.68 -13.66 4.53 -55.00 -0.25 -13.91 16 14 C 0.44 8.52 7.61 -155.49 -1.18 7.34 16 15 C -0.21 -3.53 8.62 -39.55 -0.34 -3.87 16 16 C -0.03 -0.39 9.88 -39.27 -0.39 -0.78 16 17 C -0.18 -2.66 5.74 -106.76 -0.61 -3.27 16 18 C -0.04 -0.43 9.76 -39.53 -0.39 -0.82 16 19 C -0.20 -2.30 9.93 -39.85 -0.40 -2.70 16 20 C 0.13 1.73 7.23 -39.77 -0.29 1.45 16 21 F -0.14 -1.92 17.24 2.25 0.04 -1.88 16 22 C -0.16 -2.46 9.94 -39.42 -0.39 -2.85 16 23 C 0.22 3.73 6.60 -84.86 -0.56 3.17 16 24 N -0.58 -10.98 10.37 -10.22 -0.11 -11.09 16 25 H 0.07 1.44 7.08 -51.93 -0.37 1.07 16 26 H 0.04 0.68 7.72 -51.93 -0.40 0.28 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.03 0.56 7.24 -51.93 -0.38 0.19 16 29 H 0.07 1.70 6.34 -51.93 -0.33 1.37 16 30 H 0.27 7.15 6.15 -40.82 -0.25 6.90 16 31 H 0.40 8.04 8.66 -40.82 -0.35 7.68 16 32 H 0.14 2.37 5.77 -52.49 -0.30 2.07 16 33 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 303.62 15.07 4.58 4.58 Total: -1.00 -26.89 303.62 -8.91 -35.80 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -4.01 Total: 8.41 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -4.79 Total: -16.43 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.36 Total: -48.45 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.08 Total: 17.98 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.89 -8.91 -35.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.748 kcal (2) G-P(sol) polarization free energy of solvation -26.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds