Wall clock time and date at job start Mon Mar 30 2020 20:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47022 * 2 1 4 4 H 1.09005 * 109.46708 * 304.50874 * 3 2 1 5 5 C 1.50693 * 109.47579 * 184.50592 * 3 2 1 6 6 H 1.07994 * 120.00490 * 245.21119 * 5 3 2 7 7 C 1.37884 * 119.99940 * 65.20493 * 5 3 2 8 8 N 1.31518 * 119.99872 * 9.43175 * 7 5 3 9 9 Si 1.86795 * 119.99992 * 189.42079 * 7 5 3 10 10 H 1.48497 * 109.47567 * 270.00301 * 9 7 5 11 11 H 1.48493 * 109.47130 * 30.00768 * 9 7 5 12 12 H 1.48502 * 109.47003 * 150.00524 * 9 7 5 13 13 N 1.46499 * 109.47149 * 64.50076 * 3 2 1 14 14 C 1.38986 * 120.00664 * 262.94203 * 13 3 2 15 15 C 1.39281 * 120.05095 * 354.49864 * 14 13 3 16 16 N 1.31991 * 120.03585 * 180.02562 * 15 14 13 17 17 C 1.32135 * 120.14722 * 359.97438 * 16 15 14 18 18 C 1.38900 * 120.10893 * 359.97438 * 17 16 15 19 19 N 1.39849 * 120.01851 * 180.02562 * 18 17 16 20 20 C 1.34812 * 126.84542 * 179.71189 * 19 18 17 21 21 N 1.30821 * 108.01370 * 179.89400 * 20 19 18 22 22 C 1.33285 * 109.84871 * 0.37741 * 21 20 19 23 23 N 1.30718 * 109.01976 * 359.76824 * 22 21 20 24 24 N 1.32657 * 120.06060 * 174.22624 * 14 13 3 25 25 H 1.08996 * 109.47086 * 63.34760 * 1 2 3 26 26 H 1.09006 * 109.46464 * 183.34429 * 1 2 3 27 27 H 1.08998 * 109.47410 * 303.34200 * 1 2 3 28 28 H 1.08997 * 109.47719 * 240.00082 * 2 1 3 29 29 H 1.08997 * 109.47107 * 119.99251 * 2 1 3 30 30 H 0.97000 * 119.99785 * 357.23301 * 8 7 5 31 31 H 0.97009 * 119.99477 * 82.94370 * 13 3 2 32 32 H 1.07998 * 119.98618 * 0.02562 * 15 14 13 33 33 H 1.08000 * 119.94784 * 179.97438 * 17 16 15 34 34 H 1.07994 * 125.99238 * 0.02776 * 20 19 18 35 35 H 1.08004 * 125.49245 * 179.75861 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6122 1.9791 -0.8469 5 6 3.5428 1.4441 -0.1116 6 1 4.1446 1.8145 0.7051 7 6 4.1496 0.9727 -1.2565 8 7 3.4249 0.6960 -2.3186 9 14 6.0008 0.7271 -1.2990 10 1 6.6554 1.9761 -1.7646 11 1 6.4871 0.3915 0.0633 12 1 6.3318 -0.3817 -2.2298 13 7 1.6422 2.1011 1.2467 14 6 0.5035 2.8973 1.2794 15 6 -0.1958 3.1631 0.1046 16 7 -1.2769 3.9197 0.1360 17 6 -1.6992 4.4265 1.2809 18 6 -1.0071 4.1645 2.4563 19 7 -1.4560 4.7014 3.6671 20 6 -0.8976 4.5330 4.8825 21 7 -1.6139 5.1977 5.7524 22 6 -2.6356 5.7927 5.1370 23 7 -2.5819 5.5186 3.8600 24 7 0.0777 3.4010 2.4305 25 1 -0.3633 0.4610 -0.9184 26 1 -0.3632 -1.0260 0.0600 27 1 -0.3634 0.5648 0.8585 28 1 1.8935 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 2.4597 0.7854 -2.2838 31 1 2.1736 1.9815 2.0494 32 1 0.1467 2.7500 -0.8326 33 1 -2.5839 5.0455 1.3028 34 1 -0.0129 3.9531 5.0997 35 1 -3.3869 6.4029 5.6163 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161055754.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:10 Heat of formation + Delta-G solvation = 147.842910 kcal Electronic energy + Delta-G solvation = -20489.597487 eV Core-core repulsion = 17332.172644 eV Total energy + Delta-G solvation = -3157.424844 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.47759 -40.80773 -37.14882 -34.88346 -34.05097 -32.35442 -31.51272 -31.04039 -29.25935 -26.63454 -25.20153 -23.83502 -23.30879 -22.12213 -21.63817 -20.38524 -18.47085 -18.09582 -16.90763 -16.62356 -16.19318 -15.96796 -15.28156 -14.77032 -14.45543 -14.31186 -13.94590 -13.43906 -13.05965 -12.86734 -12.41956 -12.31020 -11.89806 -11.58412 -11.46440 -11.28677 -10.96477 -10.78361 -10.62538 -10.39059 -10.28920 -10.16092 -10.07506 -9.44525 -9.11771 -8.88844 -8.55197 -7.38664 -6.68689 -4.44780 0.49191 1.44464 1.75383 1.87369 2.71265 3.28434 3.31315 3.43749 3.48326 3.93387 4.11835 4.23920 4.30301 4.49551 4.70229 4.74642 5.03748 5.18409 5.30609 5.51033 5.77233 5.78342 5.94393 5.96410 6.11003 6.25892 6.30993 6.47748 6.62467 6.66429 6.79603 7.05216 7.12543 7.46860 7.70552 7.77644 7.94366 8.11792 8.27608 8.49161 9.25139 10.68567 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.030124 B = 0.004169 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.267297 B = 6714.096050 C = 7093.433137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.135 4.135 3 C 0.259 3.741 4 H 0.044 0.956 5 C -0.619 4.619 6 H 0.060 0.940 7 C 0.032 3.968 8 N -0.897 5.897 9 Si 1.073 2.927 10 H -0.286 1.286 11 H -0.287 1.287 12 H -0.281 1.281 13 N -0.671 5.671 14 C 0.405 3.595 15 C -0.011 4.011 16 N -0.382 5.382 17 C -0.026 4.026 18 C 0.359 3.641 19 N -0.324 5.324 20 C 0.291 3.709 21 N -0.544 5.544 22 C 0.208 3.792 23 N -0.307 5.307 24 N -0.545 5.545 25 H 0.049 0.951 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.273 0.727 31 H 0.402 0.598 32 H 0.177 0.823 33 H 0.169 0.831 34 H 0.226 0.774 35 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.745 4.287 9.062 12.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.175 4.175 3 C 0.157 3.843 4 H 0.062 0.938 5 C -0.657 4.657 6 H 0.078 0.922 7 C -0.175 4.175 8 N -0.531 5.531 9 Si 0.900 3.100 10 H -0.213 1.213 11 H -0.213 1.213 12 H -0.207 1.207 13 N -0.296 5.296 14 C 0.160 3.840 15 C -0.183 4.183 16 N -0.094 5.094 17 C -0.188 4.188 18 C 0.128 3.872 19 N -0.109 5.109 20 C -0.005 4.005 21 N -0.271 5.271 22 C -0.095 4.095 23 N -0.132 5.132 24 N -0.274 5.274 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.237 0.763 32 H 0.194 0.806 33 H 0.186 0.814 34 H 0.242 0.758 35 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.887 4.000 7.675 11.061 hybrid contribution -0.826 0.260 1.496 1.729 sum -7.713 4.260 9.171 12.718 Atomic orbital electron populations 1.21894 0.98113 1.00315 1.00613 1.22107 0.92972 0.99857 1.02531 1.19166 0.96176 0.88412 0.80593 0.93844 1.21996 0.89672 1.48182 1.05883 0.92201 1.25806 1.07312 0.93034 0.91310 1.70820 1.08373 1.45048 1.28873 0.83472 0.73544 0.77203 0.75770 1.21265 1.21256 1.20684 1.45377 1.21876 1.46857 1.15462 1.19168 0.88442 0.88351 0.88039 1.23450 0.94384 1.01516 0.98931 1.68317 1.10618 1.04222 1.26285 1.22755 1.03493 1.06059 0.86534 1.18329 0.91750 0.93321 0.83826 1.47486 1.20535 1.36721 1.06186 1.26428 0.98432 0.95510 0.80110 1.70719 1.07873 1.15433 1.33042 1.26257 0.97025 0.98200 0.87987 1.78170 1.03007 1.12654 1.19412 1.66927 1.15263 1.16184 1.29048 0.93200 0.93844 0.94171 0.90212 0.92898 0.91580 0.76252 0.80610 0.81352 0.75765 0.75847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 8.84 37.16 0.33 -2.27 16 2 C -0.14 -2.67 5.31 -26.73 -0.14 -2.81 16 3 C 0.26 5.41 1.78 -69.08 -0.12 5.29 16 4 H 0.04 0.97 5.02 -51.93 -0.26 0.71 16 5 C -0.62 -14.88 8.70 -34.44 -0.30 -15.18 16 6 H 0.06 1.45 7.83 -52.49 -0.41 1.04 16 7 C 0.03 0.80 5.16 -17.82 -0.09 0.71 16 8 N -0.90 -23.62 13.02 55.43 0.72 -22.90 16 9 Si 1.07 22.57 29.91 -169.99 -5.09 17.49 16 10 H -0.29 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.29 -5.77 7.11 56.52 0.40 -5.37 16 12 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 13 N -0.67 -12.33 4.87 -54.96 -0.27 -12.59 16 14 C 0.41 7.17 6.35 -154.76 -0.98 6.19 16 15 C -0.01 -0.19 9.29 -17.10 -0.16 -0.34 16 16 N -0.38 -6.57 10.48 -12.73 -0.13 -6.71 16 17 C -0.03 -0.42 10.85 -17.18 -0.19 -0.61 16 18 C 0.36 5.75 7.56 -154.04 -1.17 4.59 16 19 N -0.32 -4.70 3.81 -13.26 -0.05 -4.75 16 20 C 0.29 3.76 12.28 -90.32 -1.11 2.65 16 21 N -0.54 -6.95 11.19 -15.73 -0.18 -7.13 16 22 C 0.21 2.35 13.03 -91.77 -1.20 1.15 16 23 N -0.31 -4.16 12.04 29.30 0.35 -3.80 16 24 N -0.54 -9.10 10.09 -11.28 -0.11 -9.21 16 25 H 0.05 0.83 7.93 -51.93 -0.41 0.42 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.69 6.31 -51.93 -0.33 0.36 16 28 H 0.08 1.74 6.36 -51.93 -0.33 1.41 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.27 7.01 6.07 -40.82 -0.25 6.76 16 31 H 0.40 7.08 8.84 -40.82 -0.36 6.72 16 32 H 0.18 3.12 5.64 -52.49 -0.30 2.83 16 33 H 0.17 2.43 7.73 -52.49 -0.41 2.02 16 34 H 0.23 2.36 8.06 -52.49 -0.42 1.94 16 35 H 0.23 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 300.02 15.07 4.52 4.52 Total: -1.00 -27.15 300.02 -8.90 -36.05 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -3.54 Total: 9.67 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -5.13 Total: -0.63 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: 0.33 Total: -67.10 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.09 Total: 17.49 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.15 -8.90 -36.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055754.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.889 kcal (2) G-P(sol) polarization free energy of solvation -27.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds