Wall clock time and date at job start Mon Mar 30 2020 20:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46504 * 109.47343 * 2 1 4 4 C 1.46500 * 120.00064 * 270.00406 * 3 2 1 5 5 C 1.50701 * 109.47056 * 269.99832 * 4 3 2 6 6 H 1.08007 * 119.99854 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00404 * 180.02562 * 5 4 3 8 8 N 1.31507 * 120.00564 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99722 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.46969 * 90.00052 * 9 7 5 11 11 H 1.48499 * 109.47068 * 210.00358 * 9 7 5 12 12 H 1.48505 * 109.46881 * 330.00286 * 9 7 5 13 13 C 1.38728 * 120.00170 * 89.99905 * 3 2 1 14 14 C 1.40245 * 119.22911 * 5.00255 * 13 3 2 15 15 C 1.36213 * 119.88083 * 180.02562 * 14 13 3 16 16 C 1.41008 * 118.29413 * 0.02562 * 15 14 13 17 17 C 1.40335 * 121.24652 * 179.97438 * 16 15 14 18 18 C 1.36393 * 119.63405 * 180.02562 * 17 16 15 19 19 F 1.35095 * 119.60695 * 179.97438 * 18 17 16 20 20 C 1.39496 * 120.79196 * 359.97438 * 18 17 16 21 21 C 1.36106 * 121.00352 * 0.02562 * 20 18 17 22 22 C 1.40543 * 119.79298 * 359.97438 * 21 20 18 23 23 N 1.31685 * 119.23095 * 185.02262 * 13 3 2 24 24 H 1.08998 * 109.47572 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47344 * 300.00113 * 1 2 3 26 26 H 1.09001 * 109.47353 * 59.99625 * 1 2 3 27 27 H 1.09004 * 109.47344 * 239.99887 * 2 1 3 28 28 H 1.09002 * 109.47477 * 119.99836 * 2 1 3 29 29 H 1.09004 * 109.47199 * 29.99398 * 4 3 2 30 30 H 1.08992 * 109.47125 * 149.99801 * 4 3 2 31 31 H 0.97001 * 120.00322 * 179.97438 * 8 7 5 32 32 H 1.08001 * 120.05778 * 359.75002 * 14 13 3 33 33 H 1.08002 * 120.85359 * 179.97438 * 15 14 13 34 34 H 1.08003 * 120.18285 * 0.06921 * 17 16 15 35 35 H 1.07999 * 119.49797 * 179.97438 * 20 18 17 36 36 H 1.07997 * 120.10538 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1494 2.3905 -2.8775 8 7 5.3915 2.1843 -3.2569 9 14 3.0130 3.4361 -3.9287 10 1 3.1157 4.8561 -3.5068 11 1 3.4066 3.3138 -5.3554 12 1 1.6134 2.9694 -3.7595 13 6 2.2496 2.0352 1.2014 14 6 2.1123 1.3270 2.4041 15 6 2.3357 1.9562 3.5914 16 6 2.7018 3.3177 3.5678 17 6 2.9460 4.0265 4.7541 18 6 3.2977 5.3429 4.6930 19 9 3.5322 6.0249 5.8354 20 6 3.4183 5.9936 3.4650 21 6 3.1883 5.3343 2.2967 22 6 2.8239 3.9772 2.3208 23 7 2.5924 3.3066 1.1859 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5816 1.6877 -2.0284 30 1 2.0955 3.1410 -1.1384 31 1 5.7175 2.5748 -4.0828 32 1 1.8257 0.2859 2.3891 33 1 2.2341 1.4261 4.5269 34 1 2.8566 3.5322 5.7102 35 1 3.6977 7.0366 3.4410 36 1 3.2862 5.8522 1.3541 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591372.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:35 Heat of formation + Delta-G solvation = 2.464012 kcal Electronic energy + Delta-G solvation = -20447.306530 eV Core-core repulsion = 17231.364871 eV Total energy + Delta-G solvation = -3215.941659 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.118 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.79849 -41.66484 -39.07141 -36.58645 -34.81605 -34.39012 -32.10071 -31.31477 -30.49941 -28.54360 -25.43486 -24.64042 -24.06831 -23.06588 -21.90893 -19.25168 -19.04501 -18.54764 -18.38748 -16.86084 -16.71056 -16.55485 -16.19022 -15.99454 -15.39149 -15.17827 -14.83197 -14.66623 -14.43550 -14.13907 -13.98428 -13.76769 -13.54225 -13.27679 -13.06458 -12.53918 -12.48688 -12.35680 -12.25142 -11.98480 -11.82005 -11.69359 -11.48080 -10.80622 -10.24587 -10.09221 -9.39686 -8.32111 -8.20158 -6.34575 -0.45957 -0.03177 1.12121 1.32874 1.36169 1.44672 1.94989 2.21759 2.32094 3.03893 3.23136 3.30892 3.51518 3.73000 3.92166 3.95944 4.08073 4.15951 4.28511 4.40303 4.40576 4.62470 4.76518 4.86289 4.87898 4.91952 4.97305 5.05821 5.10459 5.12077 5.20262 5.30642 5.38792 5.50020 5.60783 5.85697 6.05520 6.36476 6.59540 6.67457 7.27701 7.44485 8.85884 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.017488 B = 0.005695 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.720882 B = 4915.214510 C = 6029.419498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.111 3.889 3 N -0.591 5.591 4 C 0.238 3.762 5 C -0.524 4.524 6 H 0.024 0.976 7 C 0.012 3.988 8 N -0.949 5.949 9 Si 0.946 3.054 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.243 1.243 13 C 0.416 3.584 14 C -0.217 4.217 15 C -0.016 4.016 16 C -0.155 4.155 17 C -0.096 4.096 18 C 0.052 3.948 19 F -0.145 7.145 20 C -0.112 4.112 21 C -0.107 4.107 22 C 0.152 3.848 23 N -0.586 5.586 24 H 0.094 0.906 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.035 0.965 30 H 0.029 0.971 31 H 0.266 0.734 32 H 0.166 0.834 33 H 0.185 0.815 34 H 0.169 0.831 35 H 0.158 0.842 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.677 -0.366 15.541 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.011 4.011 3 N -0.300 5.300 4 C 0.115 3.885 5 C -0.563 4.563 6 H 0.042 0.958 7 C -0.185 4.185 8 N -0.589 5.589 9 Si 0.769 3.231 10 H -0.199 1.199 11 H -0.204 1.204 12 H -0.166 1.166 13 C 0.169 3.831 14 C -0.240 4.240 15 C -0.041 4.041 16 C -0.160 4.160 17 C -0.115 4.115 18 C 0.032 3.968 19 F -0.124 7.124 20 C -0.132 4.132 21 C -0.127 4.127 22 C 0.028 3.972 23 N -0.307 5.307 24 H 0.112 0.888 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.112 0.888 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.183 0.817 33 H 0.203 0.797 34 H 0.186 0.814 35 H 0.176 0.824 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.506 0.036 14.483 17.893 hybrid contribution 0.352 0.355 -0.260 0.563 sum -10.154 0.391 14.224 17.481 Atomic orbital electron populations 1.22143 0.94299 1.03399 1.01789 1.21699 0.95208 0.80610 1.03612 1.46859 1.66480 1.13732 1.02956 1.19225 0.94081 0.93375 0.81845 1.21557 0.97042 1.31382 1.06272 0.95758 1.25774 0.96518 0.97285 0.98927 1.70054 1.17461 1.46930 1.24500 0.85749 0.80343 0.79299 0.77729 1.19912 1.20412 1.16631 1.19008 0.88380 0.88476 0.87260 1.21685 1.08612 1.02670 0.91023 1.21619 0.91381 0.91680 0.99379 1.18604 1.07874 0.96411 0.93077 1.21047 0.98935 0.92522 0.99010 1.17286 1.06481 0.91242 0.81826 1.91470 1.92678 1.79981 1.48231 1.20962 1.00183 1.01861 0.90167 1.20669 1.00689 0.92353 0.98976 1.19016 0.95557 0.94580 0.88052 1.67630 1.23881 1.08966 1.30213 0.88776 0.92396 0.93773 0.91088 0.88773 0.94667 0.95330 0.92462 0.81706 0.79742 0.81357 0.82408 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 10.24 71.98 0.74 -2.91 16 2 C 0.11 3.31 5.95 86.38 0.51 3.82 16 3 N -0.59 -23.81 2.56 -708.00 -1.82 -25.62 16 4 C 0.24 11.51 4.28 85.63 0.37 11.87 16 5 C -0.52 -30.67 9.94 25.60 0.25 -30.41 16 6 H 0.02 1.60 8.06 -2.91 -0.02 1.58 16 7 C 0.01 0.73 5.47 84.65 0.46 1.20 16 8 N -0.95 -60.27 13.96 21.44 0.30 -59.97 16 9 Si 0.95 44.77 27.47 68.60 1.88 46.66 16 10 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.24 -10.47 6.54 99.48 0.65 -9.82 16 13 C 0.42 16.28 7.37 133.64 0.99 17.26 16 14 C -0.22 -6.16 9.18 22.29 0.20 -5.95 16 15 C -0.02 -0.38 9.88 22.48 0.22 -0.16 16 16 C -0.15 -4.52 5.74 -21.26 -0.12 -4.65 16 17 C -0.10 -2.28 9.73 22.35 0.22 -2.06 16 18 C 0.05 1.32 7.24 22.14 0.16 1.48 16 19 F -0.14 -3.55 17.25 44.97 0.78 -2.77 16 20 C -0.11 -2.98 9.92 22.08 0.22 -2.76 16 21 C -0.11 -3.55 9.98 22.34 0.22 -3.33 16 22 C 0.15 5.64 6.60 40.23 0.27 5.91 16 23 N -0.59 -25.56 9.00 -186.19 -1.68 -27.23 16 24 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.07 2.29 8.07 -2.38 -0.02 2.27 16 28 H 0.09 2.27 5.93 -2.39 -0.01 2.26 16 29 H 0.04 1.62 7.13 -2.39 -0.02 1.61 16 30 H 0.03 1.47 6.70 -2.39 -0.02 1.45 16 31 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 32 H 0.17 3.50 5.96 -2.91 -0.02 3.48 16 33 H 0.19 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -74.43 309.31 5.21 -69.22 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.03 Total: 10.41 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 4.71 Total: -10.69 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -3.19 Total: -112.83 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.78 Total: -2.77 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.66 kcal Total: -74.43 5.21 -69.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591372.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.681 kcal (2) G-P(sol) polarization free energy of solvation -74.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds