Wall clock time and date at job start Mon Mar 30 2020 20:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.01787 * 2 1 4 4 C 1.53877 * 110.03403 * 121.38703 * 2 1 3 5 5 C 1.54270 * 106.59565 * 119.33360 * 4 2 1 6 6 C 1.54879 * 104.19636 * 23.61563 * 5 4 2 7 7 C 1.54261 * 110.07650 * 238.58121 * 2 1 3 8 8 H 1.09002 * 110.48819 * 335.76056 * 7 2 1 9 9 O 1.42901 * 110.48867 * 98.40170 * 7 2 1 10 10 C 1.35660 * 117.00500 * 203.91051 * 9 7 2 11 11 C 1.39156 * 119.90615 * 174.12904 * 10 9 7 12 12 C 1.37601 * 120.08991 * 179.72215 * 11 10 9 13 13 C 1.39943 * 119.90565 * 0.52681 * 12 11 10 14 14 C 1.47571 * 120.09317 * 179.71930 * 13 12 11 15 15 O 1.21817 * 120.00110 * 180.02562 * 14 13 12 16 16 C 1.41767 * 120.00217 * 0.02892 * 14 13 12 17 17 H 1.08003 * 119.99103 * 359.97438 * 16 14 13 18 18 C 1.40335 * 120.00018 * 179.97438 * 16 14 13 19 19 N 1.30532 * 120.00187 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99875 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47101 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47109 * 119.99804 * 20 18 16 23 23 H 1.48502 * 109.47141 * 240.00108 * 20 18 16 24 24 C 1.39950 * 119.81525 * 359.74428 * 13 12 11 25 25 C 1.37597 * 119.90306 * 0.02562 * 24 13 12 26 26 H 1.08996 * 109.47130 * 300.69859 * 1 2 3 27 27 H 1.08997 * 109.46969 * 60.70429 * 1 2 3 28 28 H 1.09003 * 109.46750 * 180.70302 * 1 2 3 29 29 H 1.08995 * 110.03688 * 238.62186 * 4 2 1 30 30 H 1.09005 * 110.03203 * 0.02562 * 4 2 1 31 31 H 1.09004 * 110.48195 * 142.29577 * 5 4 2 32 32 H 1.08998 * 110.48447 * 264.79885 * 5 4 2 33 33 H 1.08994 * 110.76259 * 80.37076 * 6 5 4 34 34 H 1.09000 * 110.75695 * 203.56049 * 6 5 4 35 35 H 1.07999 * 119.95735 * 359.97438 * 11 10 9 36 36 H 1.08008 * 120.04454 * 180.29038 * 12 11 10 37 37 H 0.97006 * 120.00094 * 179.97438 * 19 18 16 38 38 H 1.07996 * 120.05073 * 180.02562 * 24 13 12 39 39 H 1.08000 * 119.95238 * 180.02562 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0242 0.0000 4 6 2.0572 -0.7529 1.2341 5 6 2.8886 -1.9396 0.7044 6 6 3.3151 -1.4996 -0.7180 7 6 2.0596 -0.7553 -1.2364 8 1 1.3161 -1.4664 -1.5965 9 8 2.4150 0.1649 -2.2704 10 6 2.4152 -0.3075 -3.5421 11 6 2.6317 0.5634 -4.6056 12 6 2.6384 0.0874 -5.8967 13 6 2.4162 -1.2727 -6.1400 14 6 2.4164 -1.7866 -7.5233 15 8 2.2223 -2.9708 -7.7332 16 6 2.6425 -0.9023 -8.6080 17 1 2.8142 0.1476 -8.4218 18 6 2.6432 -1.3911 -9.9235 19 7 2.4361 -2.6601 -10.1483 20 14 2.9404 -0.2257 -11.3528 21 1 3.1476 1.1505 -10.8345 22 1 4.1472 -0.6588 -12.1019 23 1 1.7633 -0.2422 -12.2580 24 6 2.1933 -2.1441 -5.0678 25 6 2.1929 -1.6606 -3.7796 26 1 -0.3633 0.5246 0.8836 27 1 -0.3633 0.5028 -0.8962 28 1 -0.3633 -1.0276 0.0126 29 1 2.6860 -0.0942 1.8330 30 1 1.2230 -1.1187 1.8328 31 1 3.7647 -2.1019 1.3323 32 1 2.2795 -2.8424 0.6602 33 1 4.1719 -0.8273 -0.6739 34 1 3.5379 -2.3665 -1.3400 35 1 2.7987 1.6136 -4.4173 36 1 2.8112 0.7631 -6.7213 37 1 2.4362 -2.9980 -11.0577 38 1 2.0218 -3.1945 -5.2511 39 1 2.0214 -2.3324 -2.9515 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233518297.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:05:22 Heat of formation + Delta-G solvation = -74.664715 kcal Electronic energy + Delta-G solvation = -20444.789014 eV Core-core repulsion = 17316.670357 eV Total energy + Delta-G solvation = -3128.118657 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.14060 -38.26539 -36.81384 -35.41349 -32.68304 -31.48175 -30.52628 -29.66597 -27.97799 -26.61285 -25.15059 -22.60192 -22.22490 -20.85684 -19.72443 -19.57265 -18.05766 -16.72029 -15.83459 -15.48640 -15.29315 -15.01923 -14.45194 -14.04333 -13.82228 -13.61068 -13.31756 -13.07918 -12.75592 -12.66383 -12.34248 -12.20665 -12.03348 -11.64744 -11.33997 -11.31272 -11.19566 -10.97619 -10.91744 -10.85431 -10.68665 -10.41274 -10.33249 -10.14232 -9.89660 -8.97873 -8.39682 -7.47338 -7.42724 -6.30099 -4.90046 1.88022 2.03252 3.04137 3.13351 3.17896 3.40955 4.00980 4.04527 4.29361 4.38692 4.64486 4.66686 5.03005 5.06678 5.13999 5.24571 5.32560 5.35423 5.40653 5.47224 5.61255 5.67944 5.72082 5.82174 5.82841 5.87503 5.94379 6.00831 6.02582 6.12532 6.15649 6.18007 6.38878 6.66858 6.89202 7.06614 7.25430 7.38766 7.42277 7.89982 8.04741 8.79716 8.85130 10.31620 10.53866 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.040973 B = 0.003484 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.214813 B = 8035.069332 C = 8324.927354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.084 0.916 4 C -0.118 4.118 5 C -0.123 4.123 6 C -0.148 4.148 7 C 0.083 3.917 8 H 0.080 0.920 9 O -0.311 6.311 10 C 0.114 3.886 11 C -0.166 4.166 12 C -0.057 4.057 13 C -0.138 4.138 14 C 0.389 3.611 15 O -0.545 6.545 16 C -0.517 4.517 17 H 0.075 0.925 18 C 0.079 3.921 19 N -0.736 5.736 20 Si 0.906 3.094 21 H -0.260 1.260 22 H -0.273 1.273 23 H -0.273 1.273 24 C -0.056 4.056 25 C -0.220 4.220 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.136 0.864 37 H 0.273 0.727 38 H 0.126 0.874 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.722 5.217 18.222 18.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.103 0.897 4 C -0.156 4.156 5 C -0.161 4.161 6 C -0.186 4.186 7 C 0.026 3.974 8 H 0.098 0.902 9 O -0.225 6.225 10 C 0.069 3.931 11 C -0.185 4.185 12 C -0.075 4.075 13 C -0.139 4.139 14 C 0.285 3.715 15 O -0.435 6.435 16 C -0.548 4.548 17 H 0.093 0.907 18 C -0.144 4.144 19 N -0.364 5.364 20 Si 0.730 3.270 21 H -0.183 1.183 22 H -0.199 1.199 23 H -0.198 1.198 24 C -0.074 4.074 25 C -0.238 4.238 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.139 0.861 36 H 0.153 0.847 37 H 0.084 0.916 38 H 0.144 0.856 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.800 4.684 18.127 18.740 hybrid contribution 0.141 0.453 -0.629 0.788 sum -0.659 5.137 17.499 18.249 Atomic orbital electron populations 1.21901 0.94363 1.01958 1.02131 1.21753 0.95987 1.00561 0.92812 0.89713 1.22182 0.99612 0.97037 0.96719 1.22267 0.99812 0.98037 0.95961 1.23028 0.98398 1.00692 0.96487 1.23361 0.96433 0.91012 0.86557 0.90175 1.85986 1.84099 1.39232 1.13182 1.19120 0.98114 0.92404 0.83444 1.20350 1.08410 0.98864 0.90883 1.21392 0.95273 0.95675 0.95169 1.21801 0.99986 0.93331 0.98802 1.18082 0.79469 0.89004 0.84926 1.90496 1.48792 1.18280 1.85900 1.20974 1.45493 0.96728 0.91652 0.90711 1.26015 0.92870 0.95135 1.00389 1.69975 1.30822 1.13904 1.21745 0.86326 0.78644 0.81300 0.80727 1.18325 1.19852 1.19847 1.21183 0.95080 1.00264 0.90916 1.21108 1.10561 0.94190 0.97981 0.92333 0.92207 0.92524 0.91472 0.91305 0.91264 0.91378 0.90319 0.90809 0.86089 0.84663 0.91574 0.85595 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.84 37.16 0.33 -1.00 16 2 C -0.09 -0.92 3.26 -89.50 -0.29 -1.21 16 3 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 4 C -0.12 -0.95 6.46 -25.61 -0.17 -1.12 16 5 C -0.12 -1.05 6.83 -25.08 -0.17 -1.22 16 6 C -0.15 -1.63 6.37 -24.74 -0.16 -1.79 16 7 C 0.08 1.02 2.21 -25.07 -0.06 0.97 16 8 H 0.08 1.01 5.98 -51.93 -0.31 0.70 16 9 O -0.31 -4.84 9.84 -18.68 -0.18 -5.02 16 10 C 0.11 2.01 6.68 -38.90 -0.26 1.75 16 11 C -0.17 -3.03 9.97 -39.47 -0.39 -3.42 16 12 C -0.06 -1.17 9.43 -39.18 -0.37 -1.54 16 13 C -0.14 -3.30 5.89 -104.81 -0.62 -3.91 16 14 C 0.39 11.14 6.91 -34.43 -0.24 10.90 16 15 O -0.54 -17.49 14.89 5.08 0.08 -17.42 16 16 C -0.52 -14.27 8.86 -37.45 -0.33 -14.61 16 17 H 0.07 1.86 6.01 -52.48 -0.32 1.55 16 18 C 0.08 2.13 5.50 -17.32 -0.10 2.04 16 19 N -0.74 -21.27 11.73 55.57 0.65 -20.62 16 20 Si 0.91 19.27 29.56 -169.99 -5.03 14.25 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 C -0.06 -1.21 9.59 -39.17 -0.38 -1.59 16 25 C -0.22 -3.97 8.81 -39.47 -0.35 -4.32 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.48 7.67 -51.93 -0.40 0.09 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.85 7.58 -51.93 -0.39 0.45 16 35 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 36 H 0.14 2.65 6.19 -52.48 -0.33 2.33 16 37 H 0.27 7.05 8.29 -40.82 -0.34 6.71 16 38 H 0.13 2.77 7.65 -52.49 -0.40 2.37 16 39 H 0.12 1.82 5.45 -52.49 -0.29 1.53 16 LS Contribution 320.88 15.07 4.84 4.84 Total: -1.00 -32.28 320.88 -8.55 -40.83 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.37 Total: 3.22 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -3.54 Total: -20.07 kcal Atomic # 7 Polarization: -21.27 SS G_CDS: 0.65 Total: -20.62 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.11 Total: -22.44 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.28 -8.55 -40.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233518297.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.834 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds