Wall clock time and date at job start Mon Mar 30 2020 20:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.01787 * 2 1 4 4 C 1.53877 * 110.03403 * 121.38703 * 2 1 3 5 5 C 1.54270 * 106.59565 * 119.33360 * 4 2 1 6 6 C 1.54879 * 104.19636 * 23.61563 * 5 4 2 7 7 C 1.54261 * 110.07650 * 238.58121 * 2 1 3 8 8 H 1.09002 * 110.48819 * 335.76056 * 7 2 1 9 9 O 1.42901 * 110.48867 * 98.40170 * 7 2 1 10 10 C 1.35660 * 117.00500 * 203.91051 * 9 7 2 11 11 C 1.39156 * 119.90615 * 174.12904 * 10 9 7 12 12 C 1.37601 * 120.08991 * 179.72215 * 11 10 9 13 13 C 1.39943 * 119.90565 * 0.52681 * 12 11 10 14 14 C 1.47571 * 120.09317 * 179.71930 * 13 12 11 15 15 O 1.21817 * 120.00110 * 180.02562 * 14 13 12 16 16 C 1.41767 * 120.00217 * 0.02892 * 14 13 12 17 17 H 1.08003 * 119.99103 * 359.97438 * 16 14 13 18 18 C 1.40335 * 120.00018 * 179.97438 * 16 14 13 19 19 N 1.30532 * 120.00187 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99875 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47101 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47109 * 119.99804 * 20 18 16 23 23 H 1.48502 * 109.47141 * 240.00108 * 20 18 16 24 24 C 1.39950 * 119.81525 * 359.74428 * 13 12 11 25 25 C 1.37597 * 119.90306 * 0.02562 * 24 13 12 26 26 H 1.08996 * 109.47130 * 300.69859 * 1 2 3 27 27 H 1.08997 * 109.46969 * 60.70429 * 1 2 3 28 28 H 1.09003 * 109.46750 * 180.70302 * 1 2 3 29 29 H 1.08995 * 110.03688 * 238.62186 * 4 2 1 30 30 H 1.09005 * 110.03203 * 0.02562 * 4 2 1 31 31 H 1.09004 * 110.48195 * 142.29577 * 5 4 2 32 32 H 1.08998 * 110.48447 * 264.79885 * 5 4 2 33 33 H 1.08994 * 110.76259 * 80.37076 * 6 5 4 34 34 H 1.09000 * 110.75695 * 203.56049 * 6 5 4 35 35 H 1.07999 * 119.95735 * 359.97438 * 11 10 9 36 36 H 1.08008 * 120.04454 * 180.29038 * 12 11 10 37 37 H 0.97006 * 120.00094 * 179.97438 * 19 18 16 38 38 H 1.07996 * 120.05073 * 180.02562 * 24 13 12 39 39 H 1.08000 * 119.95238 * 180.02562 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0242 0.0000 4 6 2.0572 -0.7529 1.2341 5 6 2.8886 -1.9396 0.7044 6 6 3.3151 -1.4996 -0.7180 7 6 2.0596 -0.7553 -1.2364 8 1 1.3161 -1.4664 -1.5965 9 8 2.4150 0.1649 -2.2704 10 6 2.4152 -0.3075 -3.5421 11 6 2.6317 0.5634 -4.6056 12 6 2.6384 0.0874 -5.8967 13 6 2.4162 -1.2727 -6.1400 14 6 2.4164 -1.7866 -7.5233 15 8 2.2223 -2.9708 -7.7332 16 6 2.6425 -0.9023 -8.6080 17 1 2.8142 0.1476 -8.4218 18 6 2.6432 -1.3911 -9.9235 19 7 2.4361 -2.6601 -10.1483 20 14 2.9404 -0.2257 -11.3528 21 1 3.1476 1.1505 -10.8345 22 1 4.1472 -0.6588 -12.1019 23 1 1.7633 -0.2422 -12.2580 24 6 2.1933 -2.1441 -5.0678 25 6 2.1929 -1.6606 -3.7796 26 1 -0.3633 0.5246 0.8836 27 1 -0.3633 0.5028 -0.8962 28 1 -0.3633 -1.0276 0.0126 29 1 2.6860 -0.0942 1.8330 30 1 1.2230 -1.1187 1.8328 31 1 3.7647 -2.1019 1.3323 32 1 2.2795 -2.8424 0.6602 33 1 4.1719 -0.8273 -0.6739 34 1 3.5379 -2.3665 -1.3400 35 1 2.7987 1.6136 -4.4173 36 1 2.8112 0.7631 -6.7213 37 1 2.4362 -2.9980 -11.0577 38 1 2.0218 -3.1945 -5.2511 39 1 2.0214 -2.3324 -2.9515 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233518297.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:05:21 Heat of formation + Delta-G solvation = -92.931082 kcal Electronic energy + Delta-G solvation = -20445.581103 eV Core-core repulsion = 17316.670357 eV Total energy + Delta-G solvation = -3128.910746 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.38955 -39.70342 -38.36775 -36.99581 -34.79009 -32.30885 -32.02730 -31.30327 -28.99978 -28.54190 -25.98595 -24.27164 -23.66802 -21.82321 -21.40183 -20.58063 -19.36074 -18.58613 -17.59706 -16.86637 -16.33725 -16.16901 -15.99253 -15.44012 -15.30917 -14.83100 -14.58096 -14.31259 -14.28772 -14.08600 -13.77052 -13.51129 -13.22291 -12.99764 -12.95101 -12.77592 -12.50573 -12.46388 -12.02950 -12.00528 -11.78623 -11.65198 -11.47942 -11.34783 -11.24472 -11.00379 -9.95783 -9.62477 -9.02974 -8.34945 -7.07882 0.22183 0.45943 1.37614 1.38739 1.57573 2.17919 2.21296 2.23327 2.84738 3.48727 3.58532 3.74179 3.82936 3.88318 3.95822 4.19988 4.27323 4.32873 4.39130 4.44057 4.51348 4.53678 4.58493 4.67822 4.77758 4.89059 4.93664 5.03589 5.09278 5.17473 5.19272 5.20186 5.26022 5.28030 5.36594 5.44088 5.46240 5.74006 5.83057 5.98734 6.50875 6.69660 6.79740 8.24507 8.48808 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.040973 B = 0.003484 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.214813 B = 8035.069332 C = 8324.927354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.080 0.920 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.150 4.150 7 C 0.069 3.931 8 H 0.078 0.922 9 O -0.310 6.310 10 C 0.131 3.869 11 C -0.162 4.162 12 C -0.053 4.053 13 C -0.181 4.181 14 C 0.364 3.636 15 O -0.601 6.601 16 C -0.543 4.543 17 H 0.097 0.903 18 C 0.021 3.979 19 N -0.789 5.789 20 Si 0.997 3.003 21 H -0.242 1.242 22 H -0.265 1.265 23 H -0.265 1.265 24 C -0.067 4.067 25 C -0.211 4.211 26 H 0.076 0.924 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.154 0.846 36 H 0.142 0.858 37 H 0.282 0.718 38 H 0.108 0.892 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.482 7.601 20.107 21.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.099 0.901 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.188 4.188 7 C 0.013 3.987 8 H 0.096 0.904 9 O -0.224 6.224 10 C 0.085 3.915 11 C -0.180 4.180 12 C -0.071 4.071 13 C -0.182 4.182 14 C 0.265 3.735 15 O -0.496 6.496 16 C -0.573 4.573 17 H 0.115 0.885 18 C -0.198 4.198 19 N -0.418 5.418 20 Si 0.816 3.184 21 H -0.164 1.164 22 H -0.190 1.190 23 H -0.189 1.189 24 C -0.086 4.086 25 C -0.229 4.229 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.171 0.829 36 H 0.160 0.840 37 H 0.092 0.908 38 H 0.126 0.874 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.559 7.087 20.053 21.276 hybrid contribution 0.055 -0.284 -1.015 1.055 sum -0.505 6.804 19.038 20.224 Atomic orbital electron populations 1.21911 0.93735 1.02378 1.02282 1.21788 0.96489 1.00252 0.92290 0.90123 1.22184 1.00192 0.96718 0.95921 1.22273 1.00558 0.98456 0.94313 1.23035 0.97577 1.00094 0.98084 1.23769 0.97248 0.91233 0.86431 0.90374 1.86014 1.83564 1.40248 1.12580 1.19217 0.95696 0.91945 0.84615 1.20602 1.07155 1.00479 0.89803 1.21395 0.94872 0.94143 0.96707 1.21464 1.04386 0.95360 0.96974 1.18814 0.78486 0.88589 0.87654 1.90433 1.51579 1.20276 1.87345 1.21497 1.45624 0.97781 0.92419 0.88505 1.27327 0.91556 0.97063 1.03838 1.70121 1.31726 1.16732 1.23185 0.84977 0.78820 0.78858 0.75793 1.16438 1.18954 1.18931 1.21111 0.96039 0.99322 0.92107 1.21241 1.09444 0.95127 0.97085 0.90539 0.93702 0.92039 0.90409 0.89762 0.89934 0.90751 0.90771 0.91665 0.82883 0.83991 0.90764 0.87429 0.83634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.84 71.98 0.64 -1.64 16 2 C -0.09 -1.53 3.26 -10.07 -0.03 -1.57 16 3 H 0.08 1.47 8.07 -2.39 -0.02 1.45 16 4 C -0.11 -1.42 6.46 31.32 0.20 -1.22 16 5 C -0.12 -1.66 6.83 31.67 0.22 -1.44 16 6 C -0.15 -2.98 6.37 31.88 0.20 -2.78 16 7 C 0.07 1.54 2.21 31.67 0.07 1.61 16 8 H 0.08 1.80 5.98 -2.39 -0.01 1.78 16 9 O -0.31 -8.92 9.84 -89.76 -0.88 -9.80 16 10 C 0.13 4.41 6.68 22.71 0.15 4.57 16 11 C -0.16 -5.59 9.97 22.34 0.22 -5.37 16 12 C -0.05 -2.18 9.43 22.53 0.21 -1.97 16 13 C -0.18 -8.98 5.89 -19.99 -0.12 -9.10 16 14 C 0.36 22.04 6.91 25.61 0.18 22.21 16 15 O -0.60 -41.39 14.89 -4.72 -0.07 -41.46 16 16 C -0.54 -30.83 8.86 23.65 0.21 -30.62 16 17 H 0.10 4.85 6.01 -2.91 -0.02 4.83 16 18 C 0.02 1.14 5.50 85.40 0.47 1.61 16 19 N -0.79 -47.49 11.73 21.89 0.26 -47.24 16 20 Si 1.00 39.56 29.56 68.60 2.03 41.59 16 21 H -0.24 -8.80 7.11 99.48 0.71 -8.09 16 22 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 23 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 24 C -0.07 -3.02 9.59 22.53 0.22 -2.81 16 25 C -0.21 -7.52 8.81 22.34 0.20 -7.32 16 26 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.85 7.67 -2.38 -0.02 0.83 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.40 7.58 -2.39 -0.02 1.38 16 35 H 0.15 4.29 8.06 -2.91 -0.02 4.27 16 36 H 0.14 5.49 6.19 -2.91 -0.02 5.48 16 37 H 0.28 15.08 8.29 -92.70 -0.77 14.31 16 38 H 0.11 5.12 7.65 -2.91 -0.02 5.09 16 39 H 0.15 4.31 5.45 -2.91 -0.02 4.29 16 Total: -1.00 -74.40 320.88 5.41 -68.99 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 1.05 Total: 23.75 kcal Atomic # 6 Polarization: -38.86 SS G_CDS: 3.03 Total: -35.82 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.26 Total: -47.24 kcal Atomic # 8 Polarization: -50.31 SS G_CDS: -0.95 Total: -51.27 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -74.40 5.41 -68.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233518297.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.944 kcal (2) G-P(sol) polarization free energy of solvation -74.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds