Wall clock time and date at job start Mon Mar 30 2020 20:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47315 * 2 1 4 4 O 1.42898 * 109.47109 * 120.00007 * 2 1 3 5 5 C 1.35630 * 117.00176 * 275.06094 * 4 2 1 6 6 C 1.38670 * 120.15831 * 5.48930 * 5 4 2 7 7 C 1.38092 * 120.08815 * 179.74443 * 6 5 4 8 8 C 1.38688 * 120.41855 * 0.55813 * 7 6 5 9 9 C 1.37701 * 120.32215 * 359.70057 * 8 7 6 10 10 C 1.39848 * 119.89953 * 0.02562 * 9 8 7 11 11 C 1.47531 * 120.20578 * 180.02562 * 10 9 8 12 12 O 1.21812 * 119.99810 * 179.97438 * 11 10 9 13 13 C 1.41831 * 120.00014 * 359.97438 * 11 10 9 14 14 H 1.08001 * 119.99922 * 359.97438 * 13 11 10 15 15 C 1.40324 * 119.99901 * 179.97438 * 13 11 10 16 16 N 1.30537 * 120.00032 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99636 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47378 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46898 * 120.00514 * 17 15 13 20 20 H 1.48504 * 109.47006 * 240.00029 * 17 15 13 21 21 C 1.53004 * 109.46626 * 240.00035 * 2 1 3 22 22 C 1.53781 * 113.61552 * 277.49502 * 21 2 1 23 23 C 1.53771 * 87.08167 * 220.02340 * 22 21 2 24 24 C 1.53777 * 113.61030 * 179.97438 * 21 2 1 25 25 H 1.08997 * 109.47529 * 59.99649 * 1 2 3 26 26 H 1.08994 * 109.47335 * 180.02562 * 1 2 3 27 27 H 1.09012 * 109.46989 * 300.00032 * 1 2 3 28 28 H 1.07995 * 119.95622 * 359.97438 * 6 5 4 29 29 H 1.07996 * 119.79034 * 180.27594 * 7 6 5 30 30 H 1.07999 * 119.84046 * 179.72092 * 8 7 6 31 31 H 1.08000 * 120.05336 * 180.02562 * 9 8 7 32 32 H 0.97004 * 119.99917 * 179.97438 * 16 15 13 33 33 H 1.08998 * 112.85329 * 48.80652 * 21 2 1 34 34 H 1.09004 * 113.61233 * 334.57310 * 22 21 2 35 35 H 1.08997 * 113.61539 * 105.46781 * 22 21 2 36 36 H 1.09009 * 113.61524 * 270.88474 * 23 22 21 37 37 H 1.09000 * 113.61656 * 139.98172 * 23 22 21 38 38 H 1.09006 * 113.61674 * 254.52572 * 24 21 2 39 39 H 1.08997 * 113.61993 * 25.43200 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1111 0.0608 2.3022 6 6 1.6576 1.3710 2.3287 7 6 1.7602 2.1157 3.4871 8 6 2.3263 1.5659 4.6276 9 6 2.7869 0.2683 4.6187 10 6 2.6846 -0.4999 3.4546 11 6 3.1754 -1.8910 3.4378 12 8 3.0840 -2.5569 2.4219 13 6 3.7538 -2.4531 4.6045 14 1 3.8353 -1.8626 5.5051 15 6 4.2202 -3.7765 4.5886 16 7 4.1222 -4.4901 3.4999 17 14 4.9826 -4.5165 6.1250 18 1 4.9766 -3.5085 7.2154 19 1 4.1961 -5.7041 6.5450 20 1 6.3806 -4.9257 5.8360 21 6 2.0399 -0.7213 -1.2493 22 6 2.0719 -2.2521 -1.1069 23 6 3.4105 -2.2158 -1.8628 24 6 3.5736 -0.7763 -1.3459 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.2203 1.8083 1.4434 29 1 1.4014 3.1342 3.5037 30 1 2.4059 2.1583 5.5271 31 1 3.2266 -0.1556 5.5094 32 1 4.4449 -5.4048 3.4888 33 1 1.5572 -0.3765 -2.1638 34 1 2.1620 -2.5929 -0.0754 35 1 1.2757 -2.7582 -1.6528 36 1 3.3025 -2.2810 -2.9455 37 1 4.1538 -2.9086 -1.4681 38 1 3.9895 -0.0913 -2.0848 39 1 4.0745 -0.7134 -0.3799 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233523041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:05:28 Heat of formation + Delta-G solvation = -56.313800 kcal Electronic energy + Delta-G solvation = -21607.139345 eV Core-core repulsion = 18479.816443 eV Total energy + Delta-G solvation = -3127.322902 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.36540 -39.73512 -38.21493 -37.56143 -34.68629 -32.82942 -31.97654 -30.46525 -28.64057 -26.85706 -26.28955 -24.51327 -23.88545 -21.93015 -21.48867 -20.20497 -18.85223 -18.34973 -17.29618 -17.04857 -16.37076 -16.11328 -15.96700 -15.63818 -15.27662 -14.94342 -14.47944 -14.28293 -13.86893 -13.74081 -13.36337 -13.25287 -13.23449 -13.03344 -12.87880 -12.72761 -12.59876 -12.48302 -12.06282 -12.00788 -11.79869 -11.67431 -11.39654 -10.98827 -10.96081 -10.88554 -9.68933 -9.40418 -8.89714 -8.24026 -6.97080 0.30372 0.65760 1.36075 1.36143 1.54004 2.21969 2.32559 2.50622 2.95115 3.54764 3.74672 3.82921 3.85461 3.97367 4.02081 4.08679 4.19400 4.31405 4.35246 4.38594 4.58500 4.60945 4.73755 4.79446 4.80107 4.89695 4.95341 4.99583 5.07025 5.15557 5.20804 5.25231 5.27463 5.37949 5.48637 5.58404 5.74647 5.78400 6.00066 6.12088 6.75299 6.78551 6.97088 8.37899 8.59959 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.015089 B = 0.007238 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.256540 B = 3867.631985 C = 5369.949595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.069 3.931 3 H 0.081 0.919 4 O -0.293 6.293 5 C 0.135 3.865 6 C -0.227 4.227 7 C -0.073 4.073 8 C -0.172 4.172 9 C -0.066 4.066 10 C -0.197 4.197 11 C 0.369 3.631 12 O -0.562 6.562 13 C -0.554 4.554 14 H 0.087 0.913 15 C 0.025 3.975 16 N -0.791 5.791 17 Si 0.990 3.010 18 H -0.245 1.245 19 H -0.266 1.266 20 H -0.266 1.266 21 C -0.094 4.094 22 C -0.139 4.139 23 C -0.136 4.136 24 C -0.132 4.132 25 H 0.103 0.897 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.150 0.850 29 H 0.162 0.838 30 H 0.153 0.847 31 H 0.129 0.871 32 H 0.277 0.723 33 H 0.141 0.859 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.038 0.962 38 H 0.091 0.909 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.687 11.969 -5.238 13.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.013 3.987 3 H 0.099 0.901 4 O -0.206 6.206 5 C 0.088 3.912 6 C -0.245 4.245 7 C -0.091 4.091 8 C -0.190 4.190 9 C -0.084 4.084 10 C -0.199 4.199 11 C 0.266 3.734 12 O -0.453 6.453 13 C -0.585 4.585 14 H 0.105 0.895 15 C -0.193 4.193 16 N -0.420 5.420 17 Si 0.809 3.191 18 H -0.168 1.168 19 H -0.191 1.191 20 H -0.191 1.191 21 C -0.111 4.111 22 C -0.177 4.177 23 C -0.173 4.173 24 C -0.169 4.169 25 H 0.121 0.879 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.168 0.832 29 H 0.180 0.820 30 H 0.171 0.829 31 H 0.147 0.853 32 H 0.088 0.912 33 H 0.159 0.841 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.127 0.873 37 H 0.057 0.943 38 H 0.109 0.891 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.690 11.321 -5.899 13.601 hybrid contribution 0.435 -0.756 0.799 1.183 sum -4.256 10.566 -5.100 12.480 Atomic orbital electron populations 1.22272 0.93924 1.02557 1.03685 1.22591 0.95093 0.96445 0.84560 0.90090 1.86475 1.79961 1.37704 1.16443 1.19669 0.93796 0.90977 0.86728 1.21466 1.08347 0.93073 1.01662 1.21420 0.96024 1.00357 0.91292 1.21327 1.02602 0.94864 1.00233 1.21466 0.96492 0.94228 0.96250 1.21260 1.05256 0.99542 0.93839 1.18683 0.80272 0.85274 0.89216 1.90473 1.56390 1.62907 1.35560 1.21427 1.38295 0.98781 1.00040 0.89458 1.27171 0.94246 0.97328 1.00578 1.70138 1.33275 1.08733 1.29887 0.85086 0.78066 0.78677 0.77263 1.16765 1.19072 1.19076 1.22760 0.96196 0.95419 0.96758 1.22770 0.97946 0.96596 1.00376 1.22786 0.97185 0.96730 1.00630 1.22770 0.96228 0.97664 1.00263 0.87856 0.93339 0.92404 0.83223 0.82040 0.82900 0.85297 0.91247 0.84148 0.92756 0.90925 0.87272 0.94319 0.89090 0.94000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.43 9.17 71.98 0.66 -3.77 16 2 C 0.07 2.22 2.23 30.60 0.07 2.28 16 3 H 0.08 2.28 6.31 -2.39 -0.02 2.26 16 4 O -0.29 -13.44 6.00 -68.55 -0.41 -13.85 16 5 C 0.14 6.07 6.62 22.90 0.15 6.22 16 6 C -0.23 -7.58 8.23 22.34 0.18 -7.39 16 7 C -0.07 -2.08 10.04 22.34 0.22 -1.85 16 8 C -0.17 -5.41 10.02 22.25 0.22 -5.19 16 9 C -0.07 -2.74 9.43 22.53 0.21 -2.53 16 10 C -0.20 -10.03 5.90 -19.91 -0.12 -10.15 16 11 C 0.37 22.77 6.91 25.61 0.18 22.95 16 12 O -0.56 -38.62 13.47 16.17 0.22 -38.40 16 13 C -0.55 -32.59 8.86 23.67 0.21 -32.38 16 14 H 0.09 4.62 6.02 -2.91 -0.02 4.60 16 15 C 0.02 1.39 5.50 85.39 0.47 1.86 16 16 N -0.79 -48.81 11.73 21.88 0.26 -48.55 16 17 Si 0.99 41.36 29.56 68.60 2.03 43.38 16 18 H -0.24 -9.46 7.11 99.48 0.71 -8.75 16 19 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 20 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 21 C -0.09 -2.74 3.58 -10.27 -0.04 -2.78 16 22 C -0.14 -5.08 7.48 31.12 0.23 -4.85 16 23 C -0.14 -4.43 8.08 31.13 0.25 -4.18 16 24 C -0.13 -4.26 7.54 31.13 0.23 -4.03 16 25 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.06 1.54 6.91 -2.38 -0.02 1.52 16 28 H 0.15 3.98 5.43 -2.91 -0.02 3.96 16 29 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 30 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 31 H 0.13 5.23 6.20 -2.91 -0.02 5.21 16 32 H 0.28 15.37 8.29 -92.71 -0.77 14.60 16 33 H 0.14 2.88 8.14 -2.39 -0.02 2.86 16 34 H 0.05 2.71 6.73 -2.39 -0.02 2.70 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 39 H 0.04 1.75 7.78 -2.39 -0.02 1.73 16 Total: -1.00 -80.19 318.47 6.29 -73.90 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 1.05 Total: 29.31 kcal Atomic # 6 Polarization: -48.94 SS G_CDS: 3.15 Total: -45.79 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.26 Total: -48.55 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -0.19 Total: -52.25 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Total: -80.19 6.29 -73.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.586 kcal (2) G-P(sol) polarization free energy of solvation -80.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds