Wall clock time and date at job start Mon Mar 30 2020 20:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.05920 * 2 1 4 4 C 1.54268 * 110.03041 * 121.41386 * 2 1 3 5 5 C 1.54895 * 104.19147 * 142.89103 * 4 2 1 6 6 C 1.54884 * 102.75381 * 322.05931 * 5 4 2 7 7 C 1.53880 * 110.03153 * 238.58207 * 2 1 3 8 8 H 1.08996 * 110.07288 * 121.41424 * 7 2 1 9 9 O 1.42893 * 110.03103 * 0.02562 * 7 2 1 10 10 C 1.35643 * 117.00054 * 158.11275 * 9 7 2 11 11 C 1.38671 * 120.15488 * 5.49794 * 10 9 7 12 12 C 1.38090 * 120.08499 * 180.02562 * 11 10 9 13 13 C 1.38683 * 120.41862 * 359.95253 * 12 11 10 14 14 C 1.37704 * 120.32606 * 0.02753 * 13 12 11 15 15 C 1.39847 * 119.89408 * 0.02562 * 14 13 12 16 16 C 1.47536 * 120.20290 * 180.02562 * 15 14 13 17 17 O 1.21804 * 120.00244 * 179.97438 * 16 15 14 18 18 C 1.41833 * 119.99678 * 359.95929 * 16 15 14 19 19 H 1.07999 * 120.00532 * 8.21368 * 18 16 15 20 20 C 1.40326 * 120.00003 * 188.21678 * 18 16 15 21 21 N 1.30544 * 119.99578 * 353.02123 * 20 18 16 22 22 Si 1.86796 * 120.00376 * 173.01755 * 20 18 16 23 23 H 1.48499 * 109.46859 * 94.97517 * 22 20 18 24 24 H 1.48496 * 109.47368 * 214.97919 * 22 20 18 25 25 H 1.48499 * 109.46980 * 334.98010 * 22 20 18 26 26 H 1.08998 * 109.47058 * 181.41460 * 1 2 3 27 27 H 1.09001 * 109.47192 * 301.42173 * 1 2 3 28 28 H 1.09002 * 109.46446 * 61.41835 * 1 2 3 29 29 H 1.09001 * 110.48370 * 24.21774 * 4 2 1 30 30 H 1.08996 * 110.60001 * 261.62628 * 4 2 1 31 31 H 1.09001 * 110.75388 * 203.74304 * 5 4 2 32 32 H 1.09001 * 110.75501 * 80.37666 * 5 4 2 33 33 H 1.09002 * 110.48404 * 279.26484 * 6 5 4 34 34 H 1.08994 * 110.60153 * 156.67545 * 6 5 4 35 35 H 1.07997 * 119.95831 * 0.02562 * 11 10 9 36 36 H 1.08004 * 119.78989 * 179.97438 * 12 11 10 37 37 H 1.08003 * 119.84005 * 179.74855 * 13 12 11 38 38 H 1.07994 * 120.05242 * 179.97438 * 14 13 12 39 39 H 0.96998 * 119.99982 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0584 -0.7554 1.2369 5 6 3.3136 -1.5008 0.7191 6 6 2.8875 -1.9407 -0.7035 7 6 2.0571 -0.7536 -1.2337 8 1 2.6866 -0.0959 -1.8331 9 8 0.9635 -1.2325 -2.0189 10 6 1.2142 -1.5019 -3.3245 11 6 2.5080 -1.4202 -3.8166 12 6 2.7615 -1.6943 -5.1461 13 6 1.7282 -2.0536 -5.9984 14 6 0.4370 -2.1404 -5.5277 15 6 0.1650 -1.8646 -4.1840 16 6 -1.2158 -1.9561 -3.6723 17 8 -1.4485 -1.7155 -2.5011 18 6 -2.2723 -2.3238 -4.5442 19 1 -2.0525 -2.6647 -5.5452 20 6 -3.6031 -2.2445 -4.1065 21 7 -3.8640 -1.9645 -2.8584 22 14 -5.0013 -2.5396 -5.3095 23 1 -5.4315 -3.9587 -5.2300 24 1 -6.1443 -1.6559 -4.9665 25 1 -4.5395 -2.2389 -6.6885 26 1 -0.3633 -1.0273 0.0254 27 1 -0.3633 0.5358 0.8770 28 1 -0.3632 0.4917 -0.9025 29 1 1.3142 -1.4659 1.5967 30 1 2.3294 -0.0553 2.0271 31 1 3.5324 -2.3679 1.3423 32 1 4.1710 -0.8292 0.6751 33 1 2.2771 -2.8427 -0.6570 34 1 3.7624 -2.1053 -1.3322 35 1 3.3185 -1.1419 -3.1594 36 1 3.7710 -1.6288 -5.5245 37 1 1.9364 -2.2620 -7.0375 38 1 -0.3644 -2.4202 -6.1954 39 1 -4.7840 -1.9101 -2.5556 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233523383.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:05:37 Heat of formation + Delta-G solvation = -66.716831 kcal Electronic energy + Delta-G solvation = -21537.172836 eV Core-core repulsion = 18409.398825 eV Total energy + Delta-G solvation = -3127.774011 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.90013 -38.01823 -36.01146 -35.66919 -32.55749 -30.99928 -30.48273 -29.15154 -27.73807 -26.52618 -24.61174 -22.80180 -21.81449 -20.70267 -19.67551 -19.09904 -17.44635 -16.43528 -15.72904 -15.45698 -14.95191 -14.75382 -14.43249 -13.85750 -13.59727 -13.33886 -13.21611 -12.84752 -12.46640 -12.25561 -11.95962 -11.72450 -11.40195 -11.34739 -11.14093 -10.99398 -10.94332 -10.78066 -10.59230 -10.49328 -10.34516 -10.26472 -10.06049 -10.02386 -9.95918 -8.88770 -8.14050 -7.35179 -7.28203 -6.19330 -4.76965 1.86764 2.14140 3.09106 3.17276 3.20922 3.89271 4.07007 4.14633 4.65802 4.67822 4.76458 5.01720 5.30712 5.38295 5.46879 5.52863 5.58892 5.68880 5.72054 5.72930 5.90759 5.91813 5.95698 5.98792 6.05801 6.18364 6.23638 6.29610 6.42115 6.46243 6.51223 6.75518 6.77180 7.00817 7.01307 7.22297 7.22592 7.35257 7.56101 8.13515 8.26802 8.90238 8.95755 10.42897 10.66859 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.018093 B = 0.006360 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.222447 B = 4401.429942 C = 5728.497001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 H 0.072 0.928 4 C -0.119 4.119 5 C -0.122 4.122 6 C -0.147 4.147 7 C 0.076 3.924 8 H 0.065 0.935 9 O -0.254 6.254 10 C 0.151 3.849 11 C -0.230 4.230 12 C -0.094 4.094 13 C -0.178 4.178 14 C -0.059 4.059 15 C -0.138 4.138 16 C 0.392 3.608 17 O -0.513 6.513 18 C -0.524 4.524 19 H 0.071 0.929 20 C 0.082 3.918 21 N -0.738 5.738 22 Si 0.902 3.098 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.262 1.262 26 H 0.072 0.928 27 H 0.039 0.961 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.133 0.867 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.538 1.947 1.930 11.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.106 4.106 3 H 0.091 0.909 4 C -0.157 4.157 5 C -0.159 4.159 6 C -0.185 4.185 7 C 0.018 3.982 8 H 0.083 0.917 9 O -0.165 6.165 10 C 0.104 3.896 11 C -0.249 4.249 12 C -0.112 4.112 13 C -0.196 4.196 14 C -0.078 4.078 15 C -0.140 4.140 16 C 0.285 3.715 17 O -0.400 6.400 18 C -0.556 4.556 19 H 0.089 0.911 20 C -0.140 4.140 21 N -0.368 5.368 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.186 1.186 26 H 0.091 0.909 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.151 0.849 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.149 2.096 2.789 11.682 hybrid contribution -0.221 -0.129 -0.961 0.994 sum 10.928 1.966 1.828 11.253 Atomic orbital electron populations 1.21517 0.92253 1.03855 1.00867 1.21802 0.98491 0.97870 0.92470 0.90938 1.22464 0.97220 0.99088 0.96891 1.22403 0.97670 0.99875 0.95979 1.22959 0.99669 0.99400 0.96490 1.23070 0.87948 0.94834 0.92324 0.91668 1.86581 1.34310 1.78420 1.17229 1.19449 0.92406 0.93711 0.84049 1.21132 0.95619 1.10888 0.97254 1.20802 0.98332 0.99037 0.93039 1.20927 0.93387 1.06027 0.99307 1.21400 0.96134 0.95603 0.94642 1.21553 0.97823 1.02077 0.92552 1.17971 0.84073 0.80457 0.88959 1.90531 1.83917 1.47692 1.17868 1.20879 0.91599 1.42331 1.00754 0.91127 1.25926 1.00037 0.93036 0.95003 1.69971 1.20449 1.31165 1.15166 0.86441 0.80531 0.78853 0.81595 1.19633 1.20237 1.18563 0.90865 0.94187 0.91763 0.90961 0.91768 0.91481 0.91697 0.90147 0.91588 0.86396 0.87101 0.86917 0.84898 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 8.10 37.16 0.30 -2.07 16 2 C -0.09 -1.34 3.50 -89.50 -0.31 -1.65 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.12 -1.52 6.36 -25.07 -0.16 -1.68 16 5 C -0.12 -1.42 6.91 -24.74 -0.17 -1.59 16 6 C -0.15 -2.12 6.01 -25.07 -0.15 -2.27 16 7 C 0.08 1.26 2.79 -25.61 -0.07 1.18 16 8 H 0.07 1.01 6.46 -51.93 -0.34 0.67 16 9 O -0.25 -5.57 6.01 -40.46 -0.24 -5.81 16 10 C 0.15 3.31 6.63 -38.61 -0.26 3.05 16 11 C -0.23 -4.14 8.73 -39.48 -0.34 -4.48 16 12 C -0.09 -1.54 10.03 -39.47 -0.40 -1.94 16 13 C -0.18 -3.08 10.02 -39.61 -0.40 -3.48 16 14 C -0.06 -1.23 9.43 -39.17 -0.37 -1.60 16 15 C -0.14 -3.35 5.90 -104.69 -0.62 -3.97 16 16 C 0.39 11.23 6.90 -34.42 -0.24 10.99 16 17 O -0.51 -16.04 13.76 -16.74 -0.23 -16.27 16 18 C -0.52 -14.55 8.82 -37.42 -0.33 -14.88 16 19 H 0.07 1.79 6.09 -52.49 -0.32 1.47 16 20 C 0.08 2.24 5.49 -17.31 -0.10 2.14 16 21 N -0.74 -21.34 11.77 55.57 0.65 -20.68 16 22 Si 0.90 19.52 29.57 -169.99 -5.03 14.50 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 26 H 0.07 1.58 7.84 -51.93 -0.41 1.18 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 1.37 7.87 -51.93 -0.41 0.96 16 29 H 0.07 0.99 7.84 -51.93 -0.41 0.58 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 34 H 0.07 0.85 7.38 -51.93 -0.38 0.47 16 35 H 0.12 1.81 5.24 -52.49 -0.28 1.54 16 36 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 37 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 38 H 0.13 2.64 6.23 -52.49 -0.33 2.31 16 39 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 LS Contribution 316.20 15.07 4.77 4.77 Total: -1.00 -32.02 316.20 -9.06 -41.09 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.38 Total: 4.67 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -3.61 Total: -22.25 kcal Atomic # 7 Polarization: -21.34 SS G_CDS: 0.65 Total: -20.68 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.47 Total: -22.08 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.02 -9.06 -41.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523383.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.628 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds