Wall clock time and date at job start Mon Mar 30 2020 20:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.43040 * 2 1 4 4 C 1.54885 * 110.48842 * 122.54179 * 2 1 3 5 5 C 1.54895 * 102.75034 * 156.62210 * 4 2 1 6 6 C 1.54265 * 104.19060 * 322.05860 * 5 4 2 7 7 H 1.09008 * 110.03071 * 264.27150 * 6 5 4 8 8 O 1.42904 * 110.03080 * 142.89848 * 6 5 4 9 9 C 1.35636 * 117.00280 * 84.26662 * 8 6 5 10 10 C 1.38662 * 120.16059 * 354.81354 * 9 8 6 11 11 C 1.38092 * 120.09213 * 179.97438 * 10 9 8 12 12 C 1.38685 * 120.41732 * 0.02562 * 11 10 9 13 13 C 1.37705 * 120.31981 * 0.02562 * 12 11 10 14 14 C 1.39842 * 119.90035 * 359.96884 * 13 12 11 15 15 C 1.47532 * 120.20631 * 180.02562 * 14 13 12 16 16 O 1.21809 * 120.00240 * 180.02562 * 15 14 13 17 17 C 1.41838 * 119.99988 * 0.02562 * 15 14 13 18 18 H 1.08007 * 119.99623 * 359.97438 * 17 15 14 19 19 C 1.40324 * 120.00247 * 179.97438 * 17 15 14 20 20 N 1.30535 * 119.99836 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 119.99926 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47064 * 60.00030 * 21 19 17 23 23 H 1.48497 * 109.47088 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47378 * 300.00029 * 21 19 17 25 25 C 1.53870 * 106.64481 * 23.58558 * 6 5 4 26 26 H 1.09000 * 109.46912 * 298.90619 * 1 2 3 27 27 H 1.08992 * 109.47195 * 58.91119 * 1 2 3 28 28 H 1.09003 * 109.46781 * 178.91554 * 1 2 3 29 29 H 1.09004 * 110.75607 * 38.31050 * 4 2 1 30 30 H 1.08994 * 110.75958 * 274.93556 * 4 2 1 31 31 H 1.09001 * 110.48640 * 203.38193 * 5 4 2 32 32 H 1.08996 * 110.59842 * 80.78819 * 5 4 2 33 33 H 1.08007 * 119.95714 * 0.02562 * 10 9 8 34 34 H 1.08001 * 119.79071 * 180.02562 * 11 10 9 35 35 H 1.07993 * 119.84175 * 179.71976 * 12 11 10 36 36 H 1.07998 * 120.04777 * 179.97438 * 13 12 11 37 37 H 0.96995 * 120.00135 * 180.02562 * 20 19 17 38 38 H 1.09002 * 110.03252 * 119.30822 * 25 6 5 39 39 H 1.08998 * 110.03239 * 240.73766 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0721 -0.7804 1.2231 5 6 3.4908 -1.1970 0.7614 6 6 3.3166 -1.5413 -0.7322 7 1 3.1702 -2.6147 -0.8533 8 8 4.4654 -1.1182 -1.4693 9 6 5.5246 -1.9649 -1.4984 10 6 5.5064 -3.1295 -0.7460 11 6 6.5854 -3.9908 -0.7770 12 6 7.6938 -3.6998 -1.5581 13 6 7.7305 -2.5476 -2.3112 14 6 6.6451 -1.6660 -2.2898 15 6 6.6770 -0.4298 -3.0945 16 8 5.7297 0.3357 -3.0727 17 6 7.8106 -0.1328 -3.8935 18 1 8.6506 -0.8114 -3.9125 19 6 7.8407 1.0427 -4.6593 20 7 6.8251 1.8625 -4.6367 21 14 9.3340 1.4342 -5.7111 22 1 9.5352 0.3516 -6.7075 23 1 9.1179 2.7224 -6.4174 24 1 10.5356 1.5394 -4.8450 25 6 2.0697 -0.7812 -1.2172 26 1 -0.3633 0.4968 0.8996 27 1 -0.3633 0.5306 -0.8800 28 1 -0.3633 -1.0275 -0.0195 29 1 1.4581 -1.6584 1.4242 30 1 2.1252 -0.1356 2.1002 31 1 3.8317 -2.0705 1.3171 32 1 4.1916 -0.3711 0.8832 33 1 4.6469 -3.3637 -0.1353 34 1 6.5659 -4.8967 -0.1894 35 1 8.5344 -4.3777 -1.5719 36 1 8.5960 -2.3251 -2.9176 37 1 6.8457 2.6749 -5.1664 38 1 2.3408 -0.0895 -2.0148 39 1 1.3178 -1.4857 -1.5728 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233526151.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:05:59 Heat of formation + Delta-G solvation = -88.772148 kcal Electronic energy + Delta-G solvation = -21109.792459 eV Core-core repulsion = 17981.062058 eV Total energy + Delta-G solvation = -3128.730401 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.31039 -39.46425 -38.04808 -37.33436 -34.71308 -32.30290 -31.70874 -30.75728 -29.31508 -28.61991 -25.93246 -24.49254 -23.32899 -21.54954 -21.46391 -20.71725 -19.10303 -18.43873 -17.41808 -16.86385 -16.34129 -16.18371 -16.01498 -15.29092 -15.11318 -14.97521 -14.58872 -14.48519 -14.12783 -13.95562 -13.70229 -13.26200 -13.00757 -12.86971 -12.71235 -12.64137 -12.52647 -12.24265 -12.09994 -11.95117 -11.84601 -11.62950 -11.56479 -11.47662 -11.30377 -10.95640 -9.72118 -9.46056 -8.94598 -8.26969 -7.01210 0.27644 0.62960 1.36161 1.40281 1.51919 2.21792 2.29992 2.47838 2.92781 3.51868 3.54631 3.81119 3.82228 3.98773 4.06171 4.15284 4.30703 4.33733 4.42067 4.49417 4.57463 4.60243 4.63322 4.66855 4.82700 4.85963 4.96396 5.01931 5.05845 5.15664 5.21427 5.23633 5.28531 5.30918 5.46301 5.49480 5.56135 5.72490 5.97088 6.09712 6.71646 6.74630 6.93586 8.34716 8.56723 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.017709 B = 0.005620 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.723579 B = 4981.325048 C = 6364.148573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 H 0.054 0.946 4 C -0.104 4.104 5 C -0.144 4.144 6 C 0.062 3.938 7 H 0.085 0.915 8 O -0.308 6.308 9 C 0.132 3.868 10 C -0.225 4.225 11 C -0.072 4.072 12 C -0.170 4.170 13 C -0.064 4.064 14 C -0.199 4.199 15 C 0.366 3.634 16 O -0.574 6.574 17 C -0.553 4.553 18 H 0.092 0.908 19 C 0.023 3.977 20 N -0.794 5.794 21 Si 0.995 3.005 22 H -0.251 1.251 23 H -0.270 1.270 24 H -0.251 1.251 25 C -0.117 4.117 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.150 0.850 34 H 0.165 0.835 35 H 0.157 0.843 36 H 0.132 0.868 37 H 0.279 0.721 38 H 0.041 0.959 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.655 -10.421 10.105 15.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.115 4.115 3 H 0.073 0.927 4 C -0.141 4.141 5 C -0.182 4.182 6 C 0.006 3.994 7 H 0.103 0.897 8 O -0.221 6.221 9 C 0.085 3.915 10 C -0.243 4.243 11 C -0.089 4.089 12 C -0.188 4.188 13 C -0.082 4.082 14 C -0.201 4.201 15 C 0.264 3.736 16 O -0.466 6.466 17 C -0.584 4.584 18 H 0.110 0.890 19 C -0.195 4.195 20 N -0.424 5.424 21 Si 0.813 3.187 22 H -0.174 1.174 23 H -0.195 1.195 24 H -0.175 1.175 25 C -0.155 4.155 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.167 0.833 34 H 0.182 0.818 35 H 0.174 0.826 36 H 0.150 0.850 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.271 -9.730 10.007 15.302 hybrid contribution 0.643 0.616 -0.747 1.163 sum -5.628 -9.113 9.260 14.159 Atomic orbital electron populations 1.21755 0.92559 1.02814 1.02197 1.21962 0.97200 0.98360 0.94001 0.92737 1.22493 0.93781 1.00734 0.97080 1.22924 0.99226 1.01865 0.94165 1.23488 0.84601 0.99421 0.91928 0.89704 1.86514 1.22873 1.43338 1.69334 1.19693 0.87618 0.90061 0.94130 1.21462 1.02764 0.95412 1.04667 1.21444 0.91663 0.98884 0.96956 1.21362 1.00452 0.97648 0.99303 1.21477 0.96370 0.93059 0.97300 1.21272 0.95221 1.01091 1.02492 1.18757 0.88258 0.84252 0.82370 1.90477 1.39179 1.50829 1.66157 1.21408 1.04429 1.06957 1.25589 0.89030 1.27263 1.00309 0.94741 0.97206 1.70134 1.31478 1.08972 1.31776 0.85116 0.76957 0.78540 0.78057 1.17444 1.19490 1.17467 1.22324 0.94841 0.99502 0.98815 0.91124 0.93127 0.91083 0.88582 0.90099 0.89201 0.93458 0.83285 0.81779 0.82573 0.84991 0.91074 0.94017 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.13 71.98 0.66 -1.92 16 2 C -0.10 -2.49 3.46 -9.68 -0.03 -2.52 16 3 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.10 -2.22 6.33 31.89 0.20 -2.02 16 5 C -0.14 -4.09 5.99 31.67 0.19 -3.90 16 6 C 0.06 2.11 2.81 31.32 0.09 2.20 16 7 H 0.09 2.51 6.47 -2.38 -0.02 2.49 16 8 O -0.31 -15.05 7.79 -68.62 -0.53 -15.59 16 9 C 0.13 6.10 6.63 22.90 0.15 6.25 16 10 C -0.22 -7.63 8.72 22.34 0.19 -7.44 16 11 C -0.07 -2.03 10.04 22.34 0.22 -1.81 16 12 C -0.17 -5.29 10.02 22.25 0.22 -5.07 16 13 C -0.06 -2.65 9.43 22.53 0.21 -2.44 16 14 C -0.20 -10.33 5.90 -19.91 -0.12 -10.45 16 15 C 0.37 23.14 6.91 25.61 0.18 23.31 16 16 O -0.57 -41.01 13.71 16.18 0.22 -40.79 16 17 C -0.55 -32.79 8.86 23.67 0.21 -32.58 16 18 H 0.09 4.81 6.02 -2.91 -0.02 4.79 16 19 C 0.02 1.29 5.50 85.39 0.47 1.76 16 20 N -0.79 -49.70 11.73 21.88 0.26 -49.44 16 21 Si 1.00 41.25 29.56 68.60 2.03 43.28 16 22 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 23 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 24 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 25 C -0.12 -3.76 6.19 31.35 0.19 -3.57 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.12 8.11 -2.39 -0.02 1.10 16 29 H 0.10 1.55 8.06 -2.38 -0.02 1.54 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 31 H 0.09 2.08 7.38 -2.39 -0.02 2.06 16 32 H 0.05 1.65 8.08 -2.39 -0.02 1.63 16 33 H 0.15 4.04 5.23 -2.91 -0.02 4.02 16 34 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 35 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 36 H 0.13 5.29 6.20 -2.91 -0.02 5.28 16 37 H 0.28 15.66 8.29 -92.71 -0.77 14.89 16 38 H 0.04 1.71 7.95 -2.39 -0.02 1.69 16 39 H 0.10 2.50 7.82 -2.39 -0.02 2.48 16 Total: -1.00 -83.10 318.33 6.06 -77.04 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 1.05 Total: 25.70 kcal Atomic # 6 Polarization: -43.24 SS G_CDS: 3.04 Total: -40.20 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.26 Total: -49.44 kcal Atomic # 8 Polarization: -56.06 SS G_CDS: -0.31 Total: -56.38 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -83.10 6.06 -77.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233526151.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.734 kcal (2) G-P(sol) polarization free energy of solvation -83.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds