Wall clock time and date at job start Mon Mar 30 2020 20:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.02035 * 2 1 4 4 C 1.54268 * 110.03567 * 238.60630 * 2 1 3 5 5 C 1.54888 * 104.19662 * 217.10854 * 4 2 1 6 6 C 1.54886 * 102.75187 * 37.93745 * 5 4 2 7 7 H 1.09011 * 110.48360 * 80.86574 * 6 5 4 8 8 O 1.42892 * 110.49035 * 203.37771 * 6 5 4 9 9 C 1.35631 * 117.00320 * 274.94246 * 8 6 5 10 10 C 1.38666 * 120.15964 * 5.34242 * 9 8 6 11 11 C 1.38095 * 120.09162 * 180.02562 * 10 9 8 12 12 C 1.38682 * 120.41843 * 359.97438 * 11 10 9 13 13 C 1.37701 * 120.31891 * 0.02562 * 12 11 10 14 14 C 1.39847 * 119.90559 * 359.97438 * 13 12 11 15 15 C 1.47526 * 120.20675 * 180.02562 * 14 13 12 16 16 O 1.21815 * 119.99984 * 180.02562 * 15 14 13 17 17 C 1.41834 * 120.00190 * 359.97438 * 15 14 13 18 18 H 1.07993 * 119.99998 * 0.02562 * 17 15 14 19 19 C 1.40320 * 119.99685 * 180.02562 * 17 15 14 20 20 N 1.30539 * 120.00832 * 0.02562 * 19 17 15 21 21 Si 1.86806 * 119.99794 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47209 * 59.99439 * 21 19 17 23 23 H 1.48494 * 109.47199 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47008 * 300.00043 * 21 19 17 25 25 C 1.53876 * 110.03279 * 121.43811 * 2 1 3 26 26 H 1.08998 * 109.47311 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46908 * 299.94388 * 1 2 3 28 28 H 1.09002 * 109.46904 * 59.93976 * 1 2 3 29 29 H 1.08997 * 110.49005 * 98.42536 * 4 2 1 30 30 H 1.09004 * 110.48356 * 335.78551 * 4 2 1 31 31 H 1.09005 * 110.75226 * 279.62525 * 5 4 2 32 32 H 1.08998 * 110.75414 * 156.25324 * 5 4 2 33 33 H 1.07999 * 119.95548 * 0.02562 * 10 9 8 34 34 H 1.07997 * 119.79043 * 179.97438 * 11 10 9 35 35 H 1.07999 * 119.83883 * 180.27669 * 12 11 10 36 36 H 1.08004 * 120.05134 * 180.02562 * 13 12 11 37 37 H 0.96991 * 120.00501 * 180.02562 * 20 19 17 38 38 H 1.09003 * 110.02926 * 359.97438 * 25 2 1 39 39 H 1.09000 * 110.03284 * 238.57219 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0242 0.0000 4 6 2.0585 -0.7550 -1.2371 5 6 3.3137 -1.5005 -0.7196 6 6 2.8875 -1.9409 0.7028 7 1 2.2790 -2.8442 0.6562 8 8 4.0362 -2.1551 1.5253 9 6 4.6265 -3.3740 1.4533 10 6 4.1833 -4.3093 0.5304 11 6 4.7851 -5.5502 0.4587 12 6 5.8352 -5.8714 1.3057 13 6 6.2890 -4.9556 2.2285 14 6 5.6894 -3.6950 2.3128 15 6 6.1706 -2.7085 3.2986 16 8 5.6453 -1.6118 3.3690 17 6 7.2442 -3.0376 4.1650 18 1 7.7097 -4.0100 4.1029 19 6 7.7015 -2.0994 5.1030 20 7 7.1386 -0.9241 5.1786 21 14 9.1160 -2.5325 6.2437 22 1 10.3219 -2.8514 5.4380 23 1 9.4061 -1.3789 7.1326 24 1 8.7449 -3.7114 7.0670 25 6 2.0571 -0.7540 1.2334 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5130 0.8905 28 1 -0.3633 0.5148 -0.8895 29 1 2.3298 -0.0529 -2.0255 30 1 1.3143 -1.4654 -1.5972 31 1 4.1710 -0.8287 -0.6754 32 1 3.5325 -2.3674 -1.3431 33 1 3.3664 -4.0670 -0.1331 34 1 4.4357 -6.2751 -0.2616 35 1 6.3019 -6.8430 1.2385 36 1 7.1073 -5.2101 2.8858 37 1 7.4550 -0.2755 5.8266 38 1 1.2228 -1.1195 1.8323 39 1 2.6867 -0.0960 1.8324 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233526158.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:06:02 Heat of formation + Delta-G solvation = -69.272679 kcal Electronic energy + Delta-G solvation = -21084.885145 eV Core-core repulsion = 17957.000304 eV Total energy + Delta-G solvation = -3127.884841 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.82382 -38.08482 -36.18494 -35.87032 -32.56725 -30.88225 -30.36540 -29.35156 -28.00352 -26.60928 -24.89002 -22.79053 -21.93403 -20.35986 -19.76558 -19.34992 -17.63326 -16.50369 -15.73543 -15.37710 -14.98200 -14.74999 -14.44223 -13.95233 -13.65210 -13.31308 -13.25529 -13.14496 -12.82435 -12.40381 -12.14425 -11.78607 -11.55640 -11.34844 -11.32710 -11.15450 -10.85901 -10.80696 -10.75123 -10.67512 -10.51702 -10.33273 -10.10831 -10.05932 -10.01705 -8.89475 -8.14823 -7.36562 -7.29916 -6.18277 -4.78896 1.86034 2.13153 3.11747 3.16738 3.18723 3.84353 4.07074 4.13632 4.61140 4.66829 4.73722 4.86909 5.23294 5.30861 5.37135 5.44795 5.51298 5.53356 5.61858 5.67712 5.71516 5.77742 5.92580 5.94659 5.98124 6.01566 6.03346 6.13007 6.22339 6.33947 6.39082 6.45098 6.52372 6.75801 6.99897 7.00494 7.21729 7.34552 7.55073 8.11824 8.25346 8.89290 8.95252 10.43267 10.66941 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.019073 B = 0.005385 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.672070 B = 5198.590952 C = 6445.006838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.075 0.925 4 C -0.117 4.117 5 C -0.149 4.149 6 C 0.074 3.926 7 H 0.069 0.931 8 O -0.261 6.261 9 C 0.152 3.848 10 C -0.230 4.230 11 C -0.094 4.094 12 C -0.177 4.177 13 C -0.059 4.059 14 C -0.138 4.138 15 C 0.391 3.609 16 O -0.518 6.518 17 C -0.523 4.523 18 H 0.071 0.929 19 C 0.081 3.919 20 N -0.739 5.739 21 Si 0.904 3.096 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.265 1.265 25 C -0.115 4.115 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.134 0.866 37 H 0.273 0.727 38 H 0.070 0.930 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.325 -3.079 -9.789 13.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.094 0.906 4 C -0.155 4.155 5 C -0.187 4.187 6 C 0.017 3.983 7 H 0.087 0.913 8 O -0.172 6.172 9 C 0.106 3.894 10 C -0.248 4.248 11 C -0.112 4.112 12 C -0.196 4.196 13 C -0.077 4.077 14 C -0.140 4.140 15 C 0.285 3.715 16 O -0.405 6.405 17 C -0.554 4.554 18 H 0.089 0.911 19 C -0.141 4.141 20 N -0.368 5.368 21 Si 0.728 3.272 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.190 1.190 25 C -0.152 4.152 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.151 0.849 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.593 -2.175 -9.584 13.055 hybrid contribution 0.644 -0.639 0.287 0.952 sum -7.949 -2.814 -9.297 12.551 Atomic orbital electron populations 1.21892 0.95062 1.01672 1.01494 1.21698 0.95439 0.99722 0.94478 0.90642 1.22358 0.96944 0.98927 0.97222 1.23076 0.98791 1.00738 0.96059 1.23252 0.86891 0.98133 0.90023 0.91291 1.86514 1.40694 1.28991 1.61005 1.19415 0.92511 0.84302 0.93216 1.21129 1.04721 0.95896 1.03090 1.20805 0.96233 0.95541 0.98611 1.20931 0.99676 0.99898 0.99075 1.21397 0.98150 0.91772 0.96417 1.21558 0.95664 0.97639 0.99173 1.17979 0.85191 0.85861 0.82476 1.90544 1.57749 1.22846 1.69372 1.20871 1.16641 1.00830 1.17080 0.91071 1.25947 0.96860 0.94251 0.97058 1.69956 1.34561 1.04228 1.28047 0.86485 0.81668 0.78929 0.80140 1.18995 1.20368 1.18990 1.22203 0.98830 0.96628 0.97585 0.92691 0.92594 0.92843 0.91506 0.91565 0.90089 0.91332 0.86316 0.87029 0.86848 0.84850 0.91639 0.91140 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.84 37.16 0.33 -1.08 16 2 C -0.09 -1.13 3.50 -89.50 -0.31 -1.45 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.12 -1.33 6.36 -25.07 -0.16 -1.49 16 5 C -0.15 -2.14 6.21 -24.74 -0.15 -2.30 16 6 C 0.07 1.25 2.71 -25.07 -0.07 1.18 16 7 H 0.07 1.07 6.53 -51.92 -0.34 0.73 16 8 O -0.26 -5.94 7.94 -40.42 -0.32 -6.27 16 9 C 0.15 3.41 6.64 -38.61 -0.26 3.16 16 10 C -0.23 -4.16 8.66 -39.48 -0.34 -4.50 16 11 C -0.09 -1.54 10.04 -39.47 -0.40 -1.94 16 12 C -0.18 -3.07 10.02 -39.61 -0.40 -3.47 16 13 C -0.06 -1.23 9.43 -39.18 -0.37 -1.60 16 14 C -0.14 -3.42 5.90 -104.69 -0.62 -4.03 16 15 C 0.39 11.47 6.91 -34.42 -0.24 11.23 16 16 O -0.52 -16.88 13.72 -16.75 -0.23 -17.11 16 17 C -0.52 -14.70 8.86 -37.43 -0.33 -15.04 16 18 H 0.07 1.80 6.02 -52.49 -0.32 1.49 16 19 C 0.08 2.23 5.50 -17.32 -0.10 2.14 16 20 N -0.74 -21.71 11.73 55.56 0.65 -21.06 16 21 Si 0.90 19.63 29.56 -169.99 -5.03 14.61 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 C -0.11 -1.75 6.22 -25.61 -0.16 -1.91 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.07 0.92 7.20 -51.93 -0.37 0.54 16 33 H 0.12 1.83 5.27 -52.49 -0.28 1.55 16 34 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.13 2.64 6.20 -52.48 -0.33 2.32 16 37 H 0.27 7.21 8.29 -40.82 -0.34 6.88 16 38 H 0.07 0.99 7.67 -51.93 -0.40 0.59 16 39 H 0.09 1.56 8.07 -51.93 -0.42 1.14 16 LS Contribution 318.13 15.07 4.79 4.79 Total: -1.00 -33.39 318.13 -9.07 -42.46 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.37 Total: 3.67 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -3.57 Total: -21.10 kcal Atomic # 7 Polarization: -21.71 SS G_CDS: 0.65 Total: -21.06 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.55 Total: -23.37 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.61 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.39 -9.07 -42.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233526158.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.812 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds