Wall clock time and date at job start Mon Mar 30 2020 20:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.02035 * 2 1 4 4 C 1.54268 * 110.03567 * 238.60630 * 2 1 3 5 5 C 1.54888 * 104.19662 * 217.10854 * 4 2 1 6 6 C 1.54886 * 102.75187 * 37.93745 * 5 4 2 7 7 H 1.09011 * 110.48360 * 80.86574 * 6 5 4 8 8 O 1.42892 * 110.49035 * 203.37771 * 6 5 4 9 9 C 1.35631 * 117.00320 * 274.94246 * 8 6 5 10 10 C 1.38666 * 120.15964 * 5.34242 * 9 8 6 11 11 C 1.38095 * 120.09162 * 180.02562 * 10 9 8 12 12 C 1.38682 * 120.41843 * 359.97438 * 11 10 9 13 13 C 1.37701 * 120.31891 * 0.02562 * 12 11 10 14 14 C 1.39847 * 119.90559 * 359.97438 * 13 12 11 15 15 C 1.47526 * 120.20675 * 180.02562 * 14 13 12 16 16 O 1.21815 * 119.99984 * 180.02562 * 15 14 13 17 17 C 1.41834 * 120.00190 * 359.97438 * 15 14 13 18 18 H 1.07993 * 119.99998 * 0.02562 * 17 15 14 19 19 C 1.40320 * 119.99685 * 180.02562 * 17 15 14 20 20 N 1.30539 * 120.00832 * 0.02562 * 19 17 15 21 21 Si 1.86806 * 119.99794 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47209 * 59.99439 * 21 19 17 23 23 H 1.48494 * 109.47199 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47008 * 300.00043 * 21 19 17 25 25 C 1.53876 * 110.03279 * 121.43811 * 2 1 3 26 26 H 1.08998 * 109.47311 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46908 * 299.94388 * 1 2 3 28 28 H 1.09002 * 109.46904 * 59.93976 * 1 2 3 29 29 H 1.08997 * 110.49005 * 98.42536 * 4 2 1 30 30 H 1.09004 * 110.48356 * 335.78551 * 4 2 1 31 31 H 1.09005 * 110.75226 * 279.62525 * 5 4 2 32 32 H 1.08998 * 110.75414 * 156.25324 * 5 4 2 33 33 H 1.07999 * 119.95548 * 0.02562 * 10 9 8 34 34 H 1.07997 * 119.79043 * 179.97438 * 11 10 9 35 35 H 1.07999 * 119.83883 * 180.27669 * 12 11 10 36 36 H 1.08004 * 120.05134 * 180.02562 * 13 12 11 37 37 H 0.96991 * 120.00501 * 180.02562 * 20 19 17 38 38 H 1.09003 * 110.02926 * 359.97438 * 25 2 1 39 39 H 1.09000 * 110.03284 * 238.57219 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0242 0.0000 4 6 2.0585 -0.7550 -1.2371 5 6 3.3137 -1.5005 -0.7196 6 6 2.8875 -1.9409 0.7028 7 1 2.2790 -2.8442 0.6562 8 8 4.0362 -2.1551 1.5253 9 6 4.6265 -3.3740 1.4533 10 6 4.1833 -4.3093 0.5304 11 6 4.7851 -5.5502 0.4587 12 6 5.8352 -5.8714 1.3057 13 6 6.2890 -4.9556 2.2285 14 6 5.6894 -3.6950 2.3128 15 6 6.1706 -2.7085 3.2986 16 8 5.6453 -1.6118 3.3690 17 6 7.2442 -3.0376 4.1650 18 1 7.7097 -4.0100 4.1029 19 6 7.7015 -2.0994 5.1030 20 7 7.1386 -0.9241 5.1786 21 14 9.1160 -2.5325 6.2437 22 1 10.3219 -2.8514 5.4380 23 1 9.4061 -1.3789 7.1326 24 1 8.7449 -3.7114 7.0670 25 6 2.0571 -0.7540 1.2334 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5130 0.8905 28 1 -0.3633 0.5148 -0.8895 29 1 2.3298 -0.0529 -2.0255 30 1 1.3143 -1.4654 -1.5972 31 1 4.1710 -0.8287 -0.6754 32 1 3.5325 -2.3674 -1.3431 33 1 3.3664 -4.0670 -0.1331 34 1 4.4357 -6.2751 -0.2616 35 1 6.3019 -6.8430 1.2385 36 1 7.1073 -5.2101 2.8858 37 1 7.4550 -0.2755 5.8266 38 1 1.2228 -1.1195 1.8323 39 1 2.6867 -0.0960 1.8324 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233526158.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:06:02 Heat of formation + Delta-G solvation = -88.527050 kcal Electronic energy + Delta-G solvation = -21085.720077 eV Core-core repulsion = 17957.000304 eV Total energy + Delta-G solvation = -3128.719773 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.29537 -39.48201 -38.06339 -37.39629 -34.71158 -32.28873 -31.67960 -30.76764 -29.30431 -28.61977 -25.93091 -24.50371 -23.36255 -21.59969 -21.52938 -20.53304 -19.14553 -18.44851 -17.43205 -16.90559 -16.27524 -16.17079 -15.98912 -15.36212 -15.10819 -14.96962 -14.50764 -14.43347 -14.21578 -14.01855 -13.76076 -13.26175 -13.03394 -12.86194 -12.74352 -12.64809 -12.52652 -12.23100 -12.09926 -11.93457 -11.79794 -11.69784 -11.57336 -11.42720 -11.28711 -10.95461 -9.72091 -9.46093 -8.94780 -8.26867 -7.01159 0.27545 0.62644 1.36391 1.40489 1.52161 2.21957 2.30003 2.45090 2.92758 3.51010 3.57346 3.81203 3.82345 3.97911 4.05232 4.14402 4.28011 4.33373 4.42659 4.44495 4.57437 4.61299 4.62760 4.66089 4.84316 4.85378 4.93453 5.04384 5.07350 5.16342 5.21115 5.23832 5.27634 5.29601 5.45932 5.50096 5.56150 5.72387 5.97150 6.09526 6.71057 6.74656 6.93282 8.34765 8.56780 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.019073 B = 0.005385 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.672070 B = 5198.590952 C = 6445.006838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.105 4.105 5 C -0.145 4.145 6 C 0.062 3.938 7 H 0.088 0.912 8 O -0.307 6.307 9 C 0.132 3.868 10 C -0.225 4.225 11 C -0.072 4.072 12 C -0.169 4.169 13 C -0.064 4.064 14 C -0.199 4.199 15 C 0.366 3.634 16 O -0.575 6.575 17 C -0.553 4.553 18 H 0.092 0.908 19 C 0.023 3.977 20 N -0.794 5.794 21 Si 0.995 3.005 22 H -0.251 1.251 23 H -0.271 1.271 24 H -0.251 1.251 25 C -0.117 4.117 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.149 0.851 34 H 0.165 0.835 35 H 0.157 0.843 36 H 0.133 0.867 37 H 0.279 0.721 38 H 0.077 0.923 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.833 -6.085 -11.841 15.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.142 4.142 5 C -0.183 4.183 6 C 0.006 3.994 7 H 0.105 0.895 8 O -0.220 6.220 9 C 0.085 3.915 10 C -0.243 4.243 11 C -0.089 4.089 12 C -0.187 4.187 13 C -0.082 4.082 14 C -0.200 4.200 15 C 0.264 3.736 16 O -0.467 6.467 17 C -0.584 4.584 18 H 0.110 0.890 19 C -0.195 4.195 20 N -0.423 5.423 21 Si 0.813 3.187 22 H -0.175 1.175 23 H -0.195 1.195 24 H -0.174 1.174 25 C -0.155 4.155 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.167 0.833 34 H 0.182 0.818 35 H 0.175 0.825 36 H 0.150 0.850 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.107 -5.207 -11.656 15.682 hybrid contribution 0.735 0.239 0.848 1.147 sum -8.372 -4.969 -10.808 14.546 Atomic orbital electron populations 1.21854 0.92760 1.02531 1.02429 1.21690 0.97253 0.98941 0.93068 0.91213 1.22361 0.95703 0.99284 0.96900 1.23030 0.99286 1.01086 0.94874 1.23661 0.85781 0.99198 0.90800 0.89455 1.86466 1.42650 1.29964 1.62896 1.19688 0.92509 0.85157 0.94125 1.21460 1.05236 0.95594 1.02005 1.21445 0.94295 0.95279 0.97919 1.21365 0.99454 1.00573 0.97325 1.21480 0.98094 0.91061 0.97550 1.21273 0.99090 0.98717 1.00949 1.18758 0.85208 0.86179 0.83501 1.90479 1.59549 1.25267 1.71390 1.21406 1.17087 1.02147 1.17727 0.89002 1.27264 1.00030 0.93558 0.98669 1.70133 1.36909 1.05942 1.29366 0.85116 0.77078 0.79120 0.77348 1.17472 1.19498 1.17435 1.22270 0.98219 0.96022 0.98991 0.91841 0.92820 0.90803 0.89868 0.88957 0.93109 0.89746 0.83311 0.81768 0.82546 0.84960 0.91068 0.90402 0.93884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.84 71.98 0.64 -1.79 16 2 C -0.09 -2.13 3.50 -10.07 -0.04 -2.17 16 3 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 4 C -0.11 -2.16 6.36 31.67 0.20 -1.96 16 5 C -0.15 -4.13 6.21 31.88 0.20 -3.93 16 6 C 0.06 2.13 2.71 31.67 0.09 2.22 16 7 H 0.09 2.61 6.53 -2.38 -0.02 2.60 16 8 O -0.31 -15.04 7.94 -68.56 -0.54 -15.59 16 9 C 0.13 6.10 6.64 22.90 0.15 6.26 16 10 C -0.22 -7.63 8.66 22.34 0.19 -7.44 16 11 C -0.07 -2.03 10.04 22.34 0.22 -1.80 16 12 C -0.17 -5.26 10.02 22.25 0.22 -5.04 16 13 C -0.06 -2.64 9.43 22.53 0.21 -2.42 16 14 C -0.20 -10.29 5.90 -19.91 -0.12 -10.41 16 15 C 0.37 23.11 6.91 25.61 0.18 23.28 16 16 O -0.57 -41.03 13.72 16.16 0.22 -40.80 16 17 C -0.55 -32.74 8.86 23.67 0.21 -32.53 16 18 H 0.09 4.82 6.02 -2.91 -0.02 4.80 16 19 C 0.02 1.29 5.50 85.39 0.47 1.76 16 20 N -0.79 -49.64 11.73 21.88 0.26 -49.39 16 21 Si 1.00 41.19 29.56 68.60 2.03 43.22 16 22 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 23 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 24 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 25 C -0.12 -3.80 6.22 31.32 0.19 -3.61 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.09 1.47 7.85 -2.39 -0.02 1.45 16 31 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.08 2.09 7.20 -2.39 -0.02 2.07 16 33 H 0.15 4.05 5.27 -2.91 -0.02 4.03 16 34 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 35 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16 36 H 0.13 5.29 6.20 -2.91 -0.02 5.27 16 37 H 0.28 15.65 8.29 -92.72 -0.77 14.88 16 38 H 0.08 2.30 7.67 -2.39 -0.02 2.29 16 39 H 0.04 1.74 8.07 -2.39 -0.02 1.72 16 Total: -1.00 -82.77 318.13 6.04 -76.73 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 1.05 Total: 25.41 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 3.03 Total: -39.59 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.26 Total: -49.39 kcal Atomic # 8 Polarization: -56.07 SS G_CDS: -0.32 Total: -56.39 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -82.77 6.04 -76.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233526158.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.795 kcal (2) G-P(sol) polarization free energy of solvation -82.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds