Wall clock time and date at job start Mon Mar 30 2020 20:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.64315 * 2 1 4 4 C 1.55156 * 110.72299 * 123.14818 * 2 1 3 5 5 C 1.54904 * 101.58430 * 154.03946 * 4 2 1 6 6 N 1.47423 * 104.83460 * 322.98787 * 5 4 2 7 7 C 1.34779 * 125.65412 * 204.09543 * 6 5 4 8 8 O 1.21572 * 120.00288 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99407 * 0.02562 * 7 6 5 10 10 C 1.39240 * 119.99792 * 184.63848 * 9 7 6 11 11 C 1.39484 * 119.83579 * 215.84986 * 10 9 7 12 12 C 1.36377 * 120.17094 * 179.97438 * 11 10 9 13 13 C 1.40872 * 119.82667 * 0.02562 * 12 11 10 14 14 C 1.41148 * 120.16179 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00359 * 212.21867 * 14 13 12 16 16 C 1.39900 * 120.00385 * 32.22119 * 14 13 12 17 17 N 1.30875 * 119.99997 * 199.67229 * 16 14 13 18 18 Si 1.86799 * 119.99600 * 19.66493 * 16 14 13 19 19 H 1.48506 * 109.47031 * 270.01612 * 18 16 14 20 20 H 1.48499 * 109.47420 * 30.01404 * 18 16 14 21 21 H 1.48499 * 109.46836 * 150.01622 * 18 16 14 22 22 C 1.40870 * 119.66993 * 0.25260 * 13 12 11 23 23 C 1.36365 * 119.83318 * 359.48752 * 22 13 12 24 24 C 1.47030 * 108.69845 * 24.35650 * 6 5 4 25 25 H 1.09005 * 109.46815 * 296.85580 * 1 2 3 26 26 H 1.08994 * 109.47408 * 56.85412 * 1 2 3 27 27 H 1.08996 * 109.47416 * 176.85774 * 1 2 3 28 28 H 1.09005 * 111.00524 * 35.96124 * 4 2 1 29 29 H 1.09004 * 111.03222 * 272.13021 * 4 2 1 30 30 H 1.09000 * 110.36758 * 204.15299 * 5 4 2 31 31 H 1.08998 * 110.46356 * 81.87559 * 5 4 2 32 32 H 0.97004 * 120.00392 * 4.63692 * 9 7 6 33 33 H 1.07996 * 119.91094 * 359.97438 * 11 10 9 34 34 H 1.08000 * 120.08598 * 180.02562 * 12 11 10 35 35 H 0.97001 * 119.99855 * 180.02562 * 17 16 14 36 36 H 1.08006 * 120.08209 * 179.72583 * 22 13 12 37 37 H 1.07998 * 119.92289 * 180.25220 * 23 22 13 38 38 H 1.09003 * 109.87906 * 118.13414 * 24 6 5 39 39 H 1.09004 * 109.87851 * 239.29538 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0790 -0.7935 1.2150 5 6 3.4652 -1.2448 0.6912 6 7 3.2494 -1.5471 -0.7355 7 6 4.0003 -2.3786 -1.4847 8 8 3.7289 -2.5530 -2.6568 9 7 5.0521 -3.0167 -0.9344 10 6 5.8852 -3.7995 -1.7293 11 6 6.4364 -4.9720 -1.2126 12 6 7.2527 -5.7442 -1.9853 13 6 7.5393 -5.3546 -3.3084 14 6 8.3837 -6.1482 -4.1143 15 1 9.0135 -5.6831 -4.8583 16 6 8.4050 -7.5373 -3.9494 17 7 9.4219 -8.2331 -4.3905 18 14 6.9821 -8.3987 -3.0993 19 1 7.2474 -8.4703 -1.6399 20 1 5.7292 -7.6381 -3.3379 21 1 6.8385 -9.7726 -3.6444 22 6 6.9835 -4.1661 -3.8213 23 6 6.1647 -3.4071 -3.0383 24 6 2.0831 -0.7863 -1.2074 25 1 -0.3633 0.4643 0.9169 26 1 -0.3634 0.5619 -0.8604 27 1 -0.3634 -1.0261 -0.0563 28 1 1.4469 -1.6530 1.4383 29 1 2.1821 -0.1497 2.0885 30 1 3.7992 -2.1366 1.2215 31 1 4.1945 -0.4424 0.8028 32 1 5.2289 -2.9306 0.0156 33 1 6.2160 -5.2691 -0.1979 34 1 7.6784 -6.6520 -1.5839 35 1 9.4364 -9.1963 -4.2765 36 1 7.2024 -3.8588 -4.8333 37 1 5.7346 -2.4977 -3.4314 38 1 2.3848 -0.0960 -1.9952 39 1 1.3215 -1.4701 -1.5824 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299626708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:05:19 Heat of formation + Delta-G solvation = -28.013853 kcal Electronic energy + Delta-G solvation = -20568.758102 eV Core-core repulsion = 17474.955129 eV Total energy + Delta-G solvation = -3093.802973 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.64636 -39.85529 -38.58814 -36.18103 -35.00583 -33.80312 -31.71872 -31.28227 -30.54358 -27.74905 -26.17353 -24.25698 -23.54770 -22.49582 -21.27094 -20.88126 -19.48182 -19.21464 -18.30742 -17.37102 -16.97737 -16.43267 -15.95311 -15.70598 -15.33564 -14.76783 -14.70621 -14.38775 -14.22098 -14.16983 -13.99015 -13.75952 -13.60317 -13.34906 -12.95052 -12.69305 -12.59793 -12.24444 -12.01586 -11.95380 -11.66289 -11.53162 -11.52471 -11.33066 -11.25839 -10.64450 -9.73007 -9.64938 -8.89665 -8.88875 -6.41958 0.63909 0.85644 1.26101 1.39333 1.49261 1.59938 2.07123 2.14750 2.63573 3.04496 3.47781 3.57893 3.65345 3.93226 4.24561 4.29992 4.30449 4.42007 4.53791 4.63192 4.68627 4.72676 4.86524 4.90969 4.93755 4.95695 5.08169 5.09452 5.15137 5.22776 5.34413 5.37244 5.47426 5.51348 5.69059 5.83793 5.94187 6.10227 6.25640 6.37840 6.73431 6.82430 6.95896 7.56496 8.19702 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.041292 B = 0.003705 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.937714 B = 7554.781237 C = 7695.457257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 H 0.098 0.902 4 C -0.118 4.118 5 C 0.088 3.912 6 N -0.637 5.637 7 C 0.707 3.293 8 O -0.626 6.626 9 N -0.658 5.658 10 C 0.039 3.961 11 C -0.089 4.089 12 C -0.230 4.230 13 C 0.068 3.932 14 C -0.487 4.487 15 H 0.056 0.944 16 C 0.051 3.949 17 N -0.848 5.848 18 Si 0.961 3.039 19 H -0.244 1.244 20 H -0.268 1.268 21 H -0.274 1.274 22 C -0.208 4.208 23 C -0.079 4.079 24 C 0.122 3.878 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.414 0.586 33 H 0.140 0.860 34 H 0.111 0.889 35 H 0.294 0.706 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.052 0.948 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.601 13.757 16.714 26.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 H 0.117 0.883 4 C -0.155 4.155 5 C -0.034 4.034 6 N -0.375 5.375 7 C 0.409 3.591 8 O -0.507 6.507 9 N -0.306 5.306 10 C -0.055 4.055 11 C -0.110 4.110 12 C -0.250 4.250 13 C 0.065 3.935 14 C -0.516 4.516 15 H 0.074 0.926 16 C -0.163 4.163 17 N -0.475 5.475 18 Si 0.784 3.216 19 H -0.168 1.168 20 H -0.192 1.192 21 H -0.200 1.200 22 C -0.228 4.228 23 C -0.099 4.099 24 C -0.001 4.001 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.132 0.868 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.252 0.748 33 H 0.158 0.842 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.071 0.929 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.592 13.400 15.769 25.910 hybrid contribution 0.165 -0.543 -0.270 0.628 sum -15.428 12.857 15.500 25.368 Atomic orbital electron populations 1.21737 0.92695 1.02124 1.03108 1.22228 0.97042 0.99414 0.92625 0.88334 1.22868 0.93869 1.00776 0.98032 1.22648 0.99873 1.01727 0.79150 1.47638 1.31520 1.45923 1.12408 1.15716 0.79773 0.79386 0.84216 1.90900 1.73386 1.69178 1.17249 1.41897 1.26902 1.49974 1.11859 1.17065 1.01021 0.94645 0.92805 1.20449 0.98218 0.92048 1.00253 1.20853 1.07043 1.02737 0.94321 1.17875 0.90514 0.92904 0.92234 1.19368 1.21182 0.92394 1.18677 0.92614 1.26750 0.97914 0.97992 0.93655 1.69752 1.28969 1.09899 1.38840 0.85587 0.79286 0.76863 0.79857 1.16830 1.19223 1.20034 1.20823 1.03301 0.99375 0.99322 1.20461 0.96615 0.98826 0.94012 1.22036 0.86212 0.93824 0.98077 0.90193 0.92221 0.93038 0.90439 0.86832 0.89799 0.89983 0.74837 0.84242 0.87089 0.89543 0.88281 0.87825 0.92933 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.17 71.98 0.66 -0.67 16 2 C -0.09 -1.11 3.53 -9.60 -0.03 -1.14 16 3 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.12 -1.10 6.53 31.98 0.21 -0.89 16 5 C 0.09 1.26 6.61 86.85 0.57 1.83 16 6 N -0.64 -15.90 3.33 -829.74 -2.76 -18.65 16 7 C 0.71 25.00 8.21 179.06 1.47 26.47 16 8 O -0.63 -28.64 14.47 -3.94 -0.06 -28.70 16 9 N -0.66 -21.64 5.26 -316.79 -1.67 -23.31 16 10 C 0.04 1.62 6.24 38.57 0.24 1.86 16 11 C -0.09 -3.65 9.90 22.14 0.22 -3.43 16 12 C -0.23 -10.95 7.29 22.48 0.16 -10.78 16 13 C 0.07 3.62 5.02 -21.28 -0.11 3.51 16 14 C -0.49 -28.29 9.53 23.39 0.22 -28.07 16 15 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 16 C 0.05 2.82 5.37 85.24 0.46 3.28 16 17 N -0.85 -47.28 13.93 21.82 0.30 -46.97 16 18 Si 0.96 43.73 24.79 68.60 1.70 45.43 16 19 H -0.24 -10.08 6.48 99.48 0.64 -9.43 16 20 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 22 C -0.21 -10.69 9.74 22.48 0.22 -10.47 16 23 C -0.08 -3.73 8.57 22.13 0.19 -3.54 16 24 C 0.12 2.62 6.48 86.73 0.56 3.18 16 25 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.58 8.08 -2.39 -0.02 0.56 16 28 H 0.08 0.78 8.05 -2.38 -0.02 0.76 16 29 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.08 1.02 7.23 -2.39 -0.02 1.01 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.41 9.94 7.27 -92.71 -0.67 9.27 16 33 H 0.14 4.46 8.06 -2.91 -0.02 4.43 16 34 H 0.11 5.15 5.00 -2.91 -0.01 5.13 16 35 H 0.29 14.66 8.30 -92.71 -0.77 13.89 16 36 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 37 H 0.10 4.94 6.56 -2.91 -0.02 4.92 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.05 1.25 7.78 -2.38 -0.02 1.23 16 Total: -1.00 -72.35 315.95 2.89 -69.46 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.32 Total: 21.61 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: 5.05 Total: -18.86 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -4.12 Total: -88.93 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.06 Total: -28.70 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.70 Total: 45.43 kcal Total: -72.35 2.89 -69.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299626708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.444 kcal (2) G-P(sol) polarization free energy of solvation -72.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds