Wall clock time and date at job start Mon Mar 30 2020 20:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 119.99786 * 2 1 4 4 O 1.21593 * 120.00298 * 180.02562 * 3 2 1 5 5 N 1.34785 * 119.99881 * 0.02562 * 3 2 1 6 6 C 1.39960 * 119.99828 * 185.30462 * 5 3 2 7 7 C 1.39286 * 119.94583 * 144.37414 * 6 5 3 8 8 C 1.38489 * 120.42634 * 179.97438 * 7 6 5 9 9 C 1.37682 * 120.32264 * 359.97438 * 8 7 6 10 10 C 1.40739 * 119.88441 * 0.02562 * 9 8 7 11 11 C 1.41412 * 120.21163 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99892 * 146.36304 * 11 10 9 13 13 C 1.39928 * 119.99647 * 326.36254 * 11 10 9 14 14 N 1.30828 * 120.00470 * 356.93722 * 13 11 10 15 15 Si 1.86801 * 119.99774 * 176.94159 * 13 11 10 16 16 H 1.48498 * 109.47413 * 59.99581 * 15 13 11 17 17 H 1.48506 * 109.47322 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46840 * 299.99718 * 15 13 11 19 19 C 1.38237 * 119.94512 * 324.09337 * 6 5 3 20 20 C 1.46499 * 120.00509 * 180.02562 * 2 1 3 21 21 C 1.53775 * 113.61413 * 313.91521 * 20 2 1 22 22 C 1.53950 * 87.02267 * 89.22670 * 21 20 2 23 23 C 1.53778 * 87.11166 * 25.36150 * 22 21 20 24 24 H 1.09004 * 109.46926 * 264.29963 * 1 2 3 25 25 H 1.08993 * 109.47533 * 24.30423 * 1 2 3 26 26 H 1.09000 * 109.47219 * 144.31029 * 1 2 3 27 27 H 0.96993 * 119.99677 * 5.29549 * 5 3 2 28 28 H 1.08000 * 119.78699 * 359.97227 * 7 6 5 29 29 H 1.07992 * 119.83798 * 180.02562 * 8 7 6 30 30 H 1.08002 * 120.05802 * 179.97438 * 9 8 7 31 31 H 0.96993 * 120.00219 * 180.02562 * 14 13 11 32 32 H 1.08000 * 120.16111 * 359.97438 * 19 6 5 33 33 H 1.09002 * 112.85290 * 182.71423 * 20 2 1 34 34 H 1.08999 * 113.61601 * 203.74876 * 21 20 2 35 35 H 1.09007 * 113.61667 * 334.64915 * 21 20 2 36 36 H 1.09001 * 113.53666 * 270.81280 * 22 21 20 37 37 H 1.08998 * 113.67025 * 139.93605 * 22 21 20 38 38 H 1.09004 * 113.61568 * 220.09126 * 23 22 21 39 39 H 1.09004 * 113.69159 * 89.20008 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3548 1.1673 -0.0005 5 7 1.4648 2.3345 0.0005 6 6 2.1601 3.5440 -0.1115 7 6 1.6011 4.6040 -0.8214 8 6 2.2801 5.8054 -0.9381 9 6 3.5159 5.9652 -0.3527 10 6 4.0932 4.9028 0.3677 11 6 5.3619 5.0595 0.9723 12 1 5.5817 4.5591 1.9038 13 6 6.3325 5.8628 0.3636 14 7 6.0878 6.4207 -0.7943 15 14 7.9778 6.1387 1.2041 16 1 8.6606 4.8341 1.3959 17 1 8.8235 7.0201 0.3596 18 1 7.7573 6.7809 2.5248 19 6 3.3978 3.6865 0.4874 20 6 2.1976 -1.2687 -0.0006 21 6 1.6594 -2.2912 1.0140 22 6 0.7138 -2.7778 -0.0993 23 6 1.7463 -2.2400 -1.1041 24 1 -0.3633 -0.1021 1.0226 25 1 -0.3634 0.9365 -0.4229 26 1 -0.3634 -0.8347 -0.5995 27 1 0.4980 2.3361 0.0784 28 1 0.6320 4.4884 -1.2838 29 1 1.8376 6.6212 -1.4904 30 1 4.0419 6.9038 -0.4468 31 1 6.7608 6.9772 -1.2164 32 1 3.8298 2.8668 1.0422 33 1 3.2782 -1.1335 0.0471 34 1 2.3962 -3.0351 1.3170 35 1 1.1425 -1.8371 1.8595 36 1 -0.2379 -2.2470 -0.1249 37 1 0.5965 -3.8610 -0.1313 38 1 1.2997 -1.7445 -1.9661 39 1 2.5076 -2.9689 -1.3823 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334980708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:20 Heat of formation + Delta-G solvation = 13.214067 kcal Electronic energy + Delta-G solvation = -20848.062852 eV Core-core repulsion = 17756.047656 eV Total energy + Delta-G solvation = -3092.015196 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.87374 -40.06922 -38.75345 -36.22004 -35.37011 -34.35307 -31.71931 -29.80063 -28.57834 -27.23923 -26.55980 -25.53152 -23.25061 -22.76582 -21.39538 -20.18700 -19.48372 -18.95921 -17.47276 -17.23557 -16.77766 -16.51323 -16.38700 -16.00552 -15.38036 -15.10025 -14.65815 -14.46814 -14.14621 -13.85990 -13.62958 -13.44826 -13.27024 -13.12267 -13.01306 -12.85408 -12.55887 -12.22326 -12.05495 -11.63467 -11.56634 -11.46157 -11.24718 -11.18622 -10.95242 -10.66233 -9.67403 -9.30475 -8.67824 -8.51438 -6.39360 0.93186 1.02271 1.35460 1.47937 1.49843 1.56104 2.11432 2.23552 2.79184 2.95191 3.59135 3.71276 3.74546 4.00845 4.03615 4.14676 4.47380 4.51517 4.62251 4.70866 4.75418 4.82062 4.82864 5.01970 5.06006 5.07940 5.13445 5.14402 5.15924 5.21960 5.33776 5.35986 5.63471 5.79888 5.84712 6.02548 6.09486 6.15162 6.39662 6.71113 6.94624 6.97100 7.02448 7.55408 8.43020 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.024827 B = 0.004350 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.539347 B = 6435.627450 C = 7271.820139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.607 5.607 3 C 0.691 3.309 4 O -0.620 6.620 5 N -0.668 5.668 6 C 0.165 3.835 7 C -0.238 4.238 8 C -0.095 4.095 9 C -0.185 4.185 10 C 0.085 3.915 11 C -0.507 4.507 12 H 0.063 0.937 13 C 0.031 3.969 14 N -0.841 5.841 15 Si 0.986 3.014 16 H -0.269 1.269 17 H -0.262 1.262 18 H -0.256 1.256 19 C -0.227 4.227 20 C 0.111 3.889 21 C -0.143 4.143 22 C -0.134 4.134 23 C -0.147 4.147 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.417 0.583 28 H 0.135 0.865 29 H 0.127 0.873 30 H 0.106 0.894 31 H 0.285 0.715 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.642 -14.071 0.276 19.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.343 5.343 3 C 0.393 3.607 4 O -0.499 6.499 5 N -0.318 5.318 6 C 0.071 3.929 7 C -0.259 4.259 8 C -0.114 4.114 9 C -0.205 4.205 10 C 0.083 3.917 11 C -0.538 4.538 12 H 0.081 0.919 13 C -0.181 4.181 14 N -0.468 5.468 15 Si 0.807 3.193 16 H -0.194 1.194 17 H -0.186 1.186 18 H -0.180 1.180 19 C -0.249 4.249 20 C 0.006 3.994 21 C -0.182 4.182 22 C -0.170 4.170 23 C -0.185 4.185 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.125 0.875 27 H 0.256 0.744 28 H 0.152 0.848 29 H 0.145 0.855 30 H 0.124 0.876 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.724 -13.980 0.086 18.903 hybrid contribution 0.762 0.294 0.301 0.871 sum -11.961 -13.686 0.387 18.180 Atomic orbital electron populations 1.22344 0.77372 1.04773 1.03770 1.46703 1.07639 1.02879 1.77060 1.16208 0.85023 0.81461 0.77961 1.90946 1.14081 1.86410 1.58471 1.42449 1.10360 1.02645 1.76358 1.17362 0.92923 0.85064 0.97580 1.20509 1.02959 0.94172 1.08282 1.20873 0.94503 0.97117 0.98866 1.21400 0.95507 0.99073 1.04512 1.17867 0.92491 0.90277 0.91077 1.19696 0.98253 1.27460 1.08343 0.91886 1.26687 1.04058 0.92610 0.94782 1.69827 1.36679 1.25673 1.14666 0.85210 0.76063 0.78912 0.79151 1.19391 1.18626 1.18025 1.21163 0.98250 0.96901 1.08538 1.22019 0.95984 0.81976 0.99451 1.23329 1.00048 0.97527 0.97249 1.23189 0.97656 1.02209 0.93971 1.23345 1.00207 0.97976 0.97004 0.90773 0.90467 0.87477 0.74367 0.84758 0.85539 0.87562 0.90429 0.89491 0.91317 0.88251 0.91138 0.87914 0.89511 0.91391 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.94 8.94 127.77 1.14 2.08 16 2 N -0.61 -16.69 3.09 -837.65 -2.59 -19.28 16 3 C 0.69 27.32 8.12 179.05 1.45 28.78 16 4 O -0.62 -31.99 13.25 -4.01 -0.05 -32.04 16 5 N -0.67 -24.58 5.17 -317.30 -1.64 -26.23 16 6 C 0.16 7.70 6.28 38.09 0.24 7.94 16 7 C -0.24 -10.13 9.97 22.58 0.23 -9.91 16 8 C -0.09 -4.39 10.02 22.20 0.22 -4.17 16 9 C -0.18 -10.21 8.64 22.75 0.20 -10.01 16 10 C 0.09 5.09 5.52 -21.31 -0.12 4.98 16 11 C -0.51 -30.54 9.05 23.46 0.21 -30.32 16 12 H 0.06 3.75 7.85 -2.91 -0.02 3.73 16 13 C 0.03 1.69 5.35 85.25 0.46 2.15 16 14 N -0.84 -47.41 10.80 21.82 0.24 -47.17 16 15 Si 0.99 42.19 29.56 68.60 2.03 44.21 16 16 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 17 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 18 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 19 C -0.23 -12.81 8.43 22.85 0.19 -12.62 16 20 C 0.11 2.80 4.49 45.52 0.20 3.01 16 21 C -0.14 -2.49 7.52 31.18 0.23 -2.25 16 22 C -0.13 -1.66 7.44 31.18 0.23 -1.43 16 23 C -0.15 -2.62 7.42 31.12 0.23 -2.39 16 24 H 0.07 0.96 8.14 -2.38 -0.02 0.95 16 25 H 0.08 1.11 6.15 -2.39 -0.01 1.10 16 26 H 0.11 1.19 4.88 -2.39 -0.01 1.18 16 27 H 0.42 11.12 6.51 -92.71 -0.60 10.52 16 28 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 29 H 0.13 4.92 8.06 -2.91 -0.02 4.89 16 30 H 0.11 6.10 6.31 -2.91 -0.02 6.08 16 31 H 0.29 14.56 8.30 -92.71 -0.77 13.79 16 32 H 0.09 5.29 6.25 -2.91 -0.02 5.27 16 33 H 0.07 2.28 7.16 -2.39 -0.02 2.26 16 34 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.24 8.12 -2.38 -0.02 1.22 16 36 H 0.10 0.99 5.12 -2.39 -0.01 0.98 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 1.26 8.08 -2.39 -0.02 1.24 16 39 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -76.89 313.81 3.58 -73.31 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.47 Total: 31.35 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 5.13 Total: -24.16 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -3.99 Total: -92.67 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -0.05 Total: -32.04 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -76.89 3.58 -73.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334980708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.526 kcal (2) G-P(sol) polarization free energy of solvation -76.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds