Wall clock time and date at job start Mon Mar 30 2020 20:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38239 * 120.00075 * 2 1 4 4 C 1.38230 * 119.99864 * 179.97438 * 3 2 1 5 5 C 1.38236 * 120.00489 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00233 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.54206 * 53.98187 * 6 5 4 8 8 H 1.08002 * 119.99780 * 215.87309 * 7 6 5 9 9 C 1.37880 * 120.00294 * 35.87196 * 7 6 5 10 10 N 1.31510 * 119.99906 * 190.68355 * 9 7 6 11 11 Si 1.86796 * 119.99794 * 10.95844 * 9 7 6 12 12 H 1.48498 * 109.47132 * 269.15338 * 11 9 7 13 13 H 1.48493 * 109.47170 * 29.15347 * 11 9 7 14 14 H 1.48499 * 109.47190 * 149.15360 * 11 9 7 15 15 C 1.53179 * 109.61658 * 293.75547 * 6 5 4 16 16 C 1.53085 * 109.16117 * 183.11187 * 15 6 5 17 17 O 1.42903 * 109.41962 * 57.61087 * 16 15 6 18 18 C 1.42901 * 114.09483 * 298.84133 * 17 16 15 19 19 C 1.53006 * 109.48327 * 301.17434 * 18 17 16 20 20 C 1.52998 * 109.49033 * 181.14614 * 18 17 16 21 21 C 1.53089 * 109.41622 * 61.15657 * 18 17 16 22 22 C 1.38239 * 119.99751 * 0.25317 * 5 4 3 23 23 C 1.38238 * 120.00062 * 179.97438 * 2 1 3 24 24 H 1.08989 * 109.47747 * 89.99842 * 1 2 3 25 25 H 1.09000 * 109.46985 * 210.00363 * 1 2 3 26 26 H 1.09005 * 109.46802 * 329.99424 * 1 2 3 27 27 H 1.07999 * 119.99823 * 359.97438 * 3 2 1 28 28 H 1.08003 * 120.00144 * 179.97438 * 4 3 2 29 29 H 0.96998 * 119.99890 * 179.97438 * 10 9 7 30 30 H 1.09001 * 109.52256 * 303.01285 * 15 6 5 31 31 H 1.08991 * 109.51664 * 63.20465 * 15 6 5 32 32 H 1.09004 * 109.48298 * 297.62274 * 16 15 6 33 33 H 1.09000 * 109.49033 * 177.60156 * 16 15 6 34 34 H 1.08994 * 109.47085 * 157.46998 * 19 18 17 35 35 H 1.09001 * 109.46652 * 277.46630 * 19 18 17 36 36 H 1.09001 * 109.46990 * 37.46348 * 19 18 17 37 37 H 1.09002 * 109.47050 * 300.05161 * 20 18 17 38 38 H 1.08999 * 109.47080 * 60.05505 * 20 18 17 39 39 H 1.09000 * 109.47441 * 180.02562 * 20 18 17 40 40 H 1.09005 * 109.52731 * 182.48323 * 21 18 17 41 41 H 1.09005 * 109.52054 * 62.29797 * 21 18 17 42 42 H 1.07998 * 120.00238 * 179.72443 * 22 5 4 43 43 H 1.08005 * 119.99682 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0000 0.0005 7 6 6.2828 0.8351 1.1492 8 1 7.1777 1.4286 1.0334 9 6 5.6016 0.8416 2.3479 10 7 5.9117 1.7205 3.2757 11 14 4.2434 -0.4031 2.6571 12 1 2.9427 0.1648 2.2201 13 1 4.5247 -1.6433 1.8903 14 1 4.1832 -0.7202 4.1065 15 6 6.2930 0.5813 -1.3201 16 6 7.8218 0.5048 -1.3412 17 8 8.2320 -0.8532 -1.1691 18 6 7.8200 -1.4345 0.0696 19 6 8.3892 -0.6173 1.2312 20 6 8.3367 -2.8721 0.1557 21 6 6.2911 -1.4361 0.1475 22 6 3.5805 -1.1972 -0.0053 23 6 2.1982 -1.1972 0.0005 24 1 -0.3634 0.0000 -1.0275 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5140 27 1 1.6582 2.1325 -0.0004 28 1 4.1205 2.1324 0.0001 29 1 5.4322 1.7253 4.1189 30 1 5.8880 0.0067 -2.1532 31 1 5.9790 1.6213 -1.4069 32 1 8.2274 1.1124 -0.5323 33 1 8.1914 0.8779 -2.2964 34 1 7.7868 -0.7861 2.1237 35 1 9.4170 -0.9256 1.4229 36 1 8.3694 0.4418 0.9743 37 1 7.9314 -3.4540 -0.6721 38 1 9.4253 -2.8708 0.1003 39 1 8.0220 -3.3154 1.1004 40 1 5.9757 -1.8386 1.1101 41 1 5.8861 -2.0514 -0.6560 42 1 4.1205 -2.1325 -0.0098 43 1 1.6581 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000244161.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:04:25 Heat of formation + Delta-G solvation = -6.746058 kcal Electronic energy + Delta-G solvation = -23145.272483 eV Core-core repulsion = 20155.932094 eV Total energy + Delta-G solvation = -2989.340389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.12283 -38.42817 -34.79621 -32.81709 -32.08016 -31.04003 -30.34451 -27.80494 -26.90811 -25.89061 -24.89670 -23.10414 -21.72374 -20.93895 -19.54647 -18.42758 -16.70403 -15.73737 -15.46989 -15.06225 -14.63736 -14.41629 -14.13662 -13.74320 -13.41072 -13.17243 -12.88401 -12.67134 -12.45341 -12.34051 -12.20902 -11.94183 -11.81265 -11.72180 -11.32057 -11.02746 -10.82367 -10.57226 -10.51607 -10.18098 -10.02808 -9.95989 -9.80253 -9.52153 -9.14371 -8.96435 -8.45319 -8.38997 -8.10239 -7.51982 -6.09241 -4.05579 2.00307 2.09657 3.41177 3.42751 3.55573 4.39259 4.52497 4.54335 5.16035 5.30883 5.36040 5.50175 5.62473 5.66231 5.69839 5.79753 5.82191 5.89013 5.95344 6.03926 6.11213 6.13414 6.20527 6.25289 6.33560 6.35012 6.45918 6.47946 6.57300 6.63589 6.72473 6.76267 6.81074 6.83126 6.96845 7.08284 7.14368 7.17885 7.24414 7.52813 7.56615 7.69138 7.80113 8.12992 8.43694 8.86478 9.52765 10.98942 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.020150 B = 0.008535 C = 0.007673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.268204 B = 3279.696463 C = 3648.356030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.104 4.104 3 C -0.129 4.129 4 C -0.083 4.083 5 C -0.060 4.060 6 C 0.079 3.921 7 C -0.506 4.506 8 H 0.086 0.914 9 C 0.086 3.914 10 N -0.893 5.893 11 Si 0.843 3.157 12 H -0.259 1.259 13 H -0.243 1.243 14 H -0.311 1.311 15 C -0.124 4.124 16 C 0.065 3.935 17 O -0.389 6.389 18 C 0.123 3.877 19 C -0.159 4.159 20 C -0.135 4.135 21 C -0.137 4.137 22 C -0.123 4.123 23 C -0.138 4.138 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.111 0.889 28 H 0.127 0.873 29 H 0.262 0.738 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.021 0.979 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.041 0.959 42 H 0.120 0.880 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.706 -4.544 -6.820 8.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.104 4.104 3 C -0.147 4.147 4 C -0.101 4.101 5 C -0.060 4.060 6 C 0.078 3.922 7 C -0.543 4.543 8 H 0.104 0.896 9 C -0.117 4.117 10 N -0.530 5.530 11 Si 0.674 3.326 12 H -0.184 1.184 13 H -0.169 1.169 14 H -0.241 1.241 15 C -0.162 4.162 16 C -0.012 4.012 17 O -0.309 6.309 18 C 0.084 3.916 19 C -0.216 4.216 20 C -0.192 4.192 21 C -0.175 4.175 22 C -0.141 4.141 23 C -0.156 4.156 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.129 0.871 28 H 0.145 0.855 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.109 0.891 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.138 0.862 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.643 -4.567 -6.767 8.940 hybrid contribution -1.058 -0.499 0.740 1.384 sum -4.701 -5.065 -6.028 9.170 Atomic orbital electron populations 1.20692 0.92234 1.01967 1.01413 1.19693 0.95211 0.93522 1.02008 1.20916 0.94591 0.96743 1.02463 1.21010 0.93066 0.98761 0.97235 1.20205 0.97598 0.92180 0.96048 1.17576 0.86763 0.93019 0.94825 1.20883 1.12293 1.26685 0.94455 0.89613 1.24892 0.96195 0.94604 0.96015 1.69909 1.42022 1.33955 1.07072 0.87726 0.84737 0.84353 0.75817 1.18405 1.16868 1.24076 1.22036 0.95967 1.00825 0.97340 1.22497 0.94492 0.83830 1.00336 1.87771 1.77697 1.26843 1.38614 1.21299 0.93678 0.92201 0.84408 1.22697 0.97368 1.02813 0.98675 1.21771 1.00873 0.95175 1.01361 1.22655 0.94954 0.98999 1.00891 1.21189 0.93880 0.98546 1.00506 1.20807 0.94245 0.96850 1.03692 0.91908 0.92309 0.92165 0.87132 0.85508 0.92785 0.93604 0.91625 0.91850 0.90867 0.91170 0.96000 0.89118 0.92886 0.92664 0.91769 0.91034 0.94053 0.86176 0.87287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.01 36.00 0.36 -1.08 16 2 C -0.10 -1.83 5.31 -104.62 -0.56 -2.39 16 3 C -0.13 -2.41 8.92 -39.58 -0.35 -2.76 16 4 C -0.08 -1.71 7.16 -39.59 -0.28 -1.99 16 5 C -0.06 -1.26 2.31 -104.62 -0.24 -1.50 16 6 C 0.08 1.68 0.35 -156.63 -0.05 1.62 16 7 C -0.51 -12.37 4.71 -34.44 -0.16 -12.53 16 8 H 0.09 2.26 5.12 -52.49 -0.27 1.99 16 9 C 0.09 2.26 4.82 -17.82 -0.09 2.18 16 10 N -0.89 -25.65 13.96 55.43 0.77 -24.88 16 11 Si 0.84 20.61 21.65 -169.99 -3.68 16.93 16 12 H -0.26 -6.33 4.76 56.52 0.27 -6.06 16 13 H -0.24 -5.53 3.43 56.52 0.19 -5.34 16 14 H -0.31 -8.15 7.11 56.52 0.40 -7.75 16 15 C -0.12 -2.39 4.75 -26.59 -0.13 -2.51 16 16 C 0.06 1.20 6.43 37.20 0.24 1.44 16 17 O -0.39 -7.65 10.24 -35.23 -0.36 -8.01 16 18 C 0.12 2.38 1.11 -90.57 -0.10 2.28 16 19 C -0.16 -3.28 7.32 37.16 0.27 -3.01 16 20 C -0.13 -2.21 8.74 37.16 0.32 -1.88 16 21 C -0.14 -2.79 2.40 -26.59 -0.06 -2.86 16 22 C -0.12 -2.44 5.73 -39.58 -0.23 -2.66 16 23 C -0.14 -2.49 9.01 -39.58 -0.36 -2.85 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 26 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 27 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.13 2.68 7.85 -52.48 -0.41 2.26 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 32 H 0.06 1.25 4.99 -51.93 -0.26 0.99 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.59 6.98 -51.93 -0.36 1.23 16 35 H 0.02 0.40 7.93 -51.93 -0.41 -0.01 16 36 H 0.09 2.01 3.28 -51.93 -0.17 1.84 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.85 8.12 -51.93 -0.42 0.42 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.54 4.91 -51.93 -0.25 1.28 16 41 H 0.04 0.80 7.04 -51.93 -0.37 0.44 16 42 H 0.12 2.29 5.58 -52.49 -0.29 1.99 16 43 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 301.24 15.07 4.54 4.54 Total: -1.00 -28.03 301.24 -7.05 -35.07 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.91 Total: 6.86 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: -1.41 Total: -30.50 kcal Atomic # 7 Polarization: -25.65 SS G_CDS: 0.77 Total: -24.88 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.36 Total: -8.01 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -3.68 Total: 16.93 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.03 -7.05 -35.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000244161.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.329 kcal (2) G-P(sol) polarization free energy of solvation -28.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds