Wall clock time and date at job start Mon Mar 30 2020 20:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.48853 * 2 1 4 4 C 1.53090 * 109.48244 * 120.02625 * 2 1 3 5 5 C 1.53181 * 109.16501 * 177.59500 * 4 2 1 6 6 H 1.08999 * 109.54348 * 62.96999 * 5 4 2 7 7 C 1.53003 * 109.54419 * 183.15405 * 5 4 2 8 8 H 1.08996 * 109.47047 * 59.81541 * 7 5 4 9 9 C 1.50701 * 109.46867 * 299.82085 * 7 5 4 10 10 H 1.08004 * 119.99779 * 335.06548 * 9 7 5 11 11 C 1.37876 * 119.99970 * 155.07652 * 9 7 5 12 12 N 1.31509 * 119.99872 * 172.03644 * 11 9 7 13 13 Si 1.86800 * 119.99757 * 352.30907 * 11 9 7 14 14 H 1.48499 * 109.47176 * 85.15933 * 13 11 9 15 15 H 1.48508 * 109.46835 * 205.15894 * 13 11 9 16 16 H 1.48502 * 109.47047 * 325.15602 * 13 11 9 17 17 C 1.50701 * 109.46756 * 179.81853 * 7 5 4 18 18 C 1.38238 * 119.99790 * 64.91030 * 17 7 5 19 19 C 1.38234 * 119.99636 * 179.76158 * 18 17 7 20 20 C 1.38242 * 119.99977 * 0.48374 * 19 18 17 21 21 C 1.38227 * 119.99863 * 359.79466 * 20 19 18 22 22 C 1.38230 * 119.99700 * 245.17610 * 17 7 5 23 23 C 1.53181 * 109.10567 * 303.06256 * 5 4 2 24 24 C 1.53108 * 109.15665 * 56.84510 * 23 5 4 25 25 O 1.42897 * 109.49088 * 302.52916 * 24 23 5 26 26 H 1.09004 * 109.46988 * 299.97014 * 1 2 3 27 27 H 1.08999 * 109.47501 * 59.97113 * 1 2 3 28 28 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46848 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46995 * 300.02615 * 3 2 1 31 31 H 1.08996 * 109.46941 * 60.02712 * 3 2 1 32 32 H 1.08998 * 109.52530 * 57.68218 * 4 2 1 33 33 H 1.09000 * 109.57385 * 297.52909 * 4 2 1 34 34 H 0.97000 * 119.99722 * 179.97438 * 12 11 9 35 35 H 1.07994 * 119.99997 * 359.97438 * 18 17 7 36 36 H 1.07998 * 120.00073 * 180.25291 * 19 18 17 37 37 H 1.08004 * 120.00025 * 179.76233 * 20 19 18 38 38 H 1.08003 * 120.00054 * 179.97438 * 21 20 19 39 39 H 1.07995 * 120.00645 * 0.02562 * 22 17 7 40 40 H 1.08997 * 109.52037 * 176.84094 * 23 5 4 41 41 H 1.09004 * 109.52365 * 297.03136 * 23 5 4 42 42 H 1.08998 * 109.48111 * 182.49328 * 24 23 5 43 43 H 1.09005 * 109.41177 * 62.51313 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5712 -0.7707 1.2122 6 1 3.9690 0.2436 1.2423 7 6 4.0878 -1.5593 2.4173 8 1 3.6893 -2.5733 2.3859 9 6 3.6421 -0.8835 3.6883 10 1 3.4194 0.1734 3.6886 11 6 3.5187 -1.6143 4.8510 12 7 3.2832 -1.0018 5.9907 13 14 3.6936 -3.4736 4.8084 14 1 5.1301 -3.8379 4.9039 15 1 2.9554 -4.0665 5.9524 16 1 3.1344 -3.9943 3.5351 17 6 5.5934 -1.6098 2.3764 18 6 6.3278 -0.4460 2.5079 19 6 7.7090 -0.4929 2.4753 20 6 8.3555 -1.7024 2.3013 21 6 7.6210 -2.8653 2.1641 22 6 6.2399 -2.8191 2.2020 23 6 4.0196 -1.4588 -0.0809 24 6 3.4307 -0.7093 -1.2791 25 8 2.0066 -0.6741 -1.1664 26 1 -0.3633 0.5134 0.8903 27 1 -0.3634 0.5143 -0.8897 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1304 1.4420 -0.0005 30 1 1.6769 1.9565 -0.8898 31 1 1.6777 1.9562 0.8902 32 1 1.6443 -1.7374 1.2711 33 1 1.7149 -0.1852 2.1404 34 1 3.1961 -1.5160 6.8086 35 1 5.8226 0.4994 2.6394 36 1 8.2828 0.4157 2.5821 37 1 9.4346 -1.7385 2.2720 38 1 8.1261 -3.8101 2.0277 39 1 5.6661 -3.7277 2.0946 40 1 5.1078 -1.4471 -0.1412 41 1 3.6645 -2.4893 -0.0872 42 1 3.7100 -1.2203 -2.2004 43 1 3.8192 0.3090 -1.2960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000288902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:04:36 Heat of formation + Delta-G solvation = -44.236648 kcal Electronic energy + Delta-G solvation = -22370.246895 eV Core-core repulsion = 19379.280792 eV Total energy + Delta-G solvation = -2990.966103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.80737 -38.44303 -35.03876 -33.19926 -32.32633 -30.69999 -30.18750 -28.35645 -27.09359 -26.44300 -24.08606 -22.24461 -22.00077 -21.26780 -19.30554 -18.62637 -16.89475 -16.18807 -15.71045 -15.42741 -14.74391 -14.56956 -14.15659 -14.06064 -13.78220 -13.08055 -12.88426 -12.74363 -12.67351 -12.35986 -12.23755 -11.97431 -11.85699 -11.69038 -11.40929 -11.28414 -10.96042 -10.81573 -10.64529 -10.50803 -10.41641 -10.37487 -9.82563 -9.62872 -9.42045 -9.09113 -8.87360 -8.59368 -8.20989 -7.76905 -6.14577 -4.12602 2.09916 2.17020 3.28307 3.33451 3.36060 4.11837 4.38174 4.55101 5.09156 5.20544 5.23062 5.31960 5.39909 5.50167 5.53152 5.57477 5.67294 5.70070 5.83653 5.84812 5.94670 5.97461 6.02964 6.03858 6.14319 6.25126 6.29362 6.34670 6.41182 6.43393 6.47504 6.59268 6.64575 6.81967 6.85073 6.90395 7.00760 7.13515 7.19033 7.29703 7.55847 7.66968 7.70089 7.80425 8.43917 8.88723 9.48788 10.97707 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.014608 B = 0.008167 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.352848 B = 3427.676399 C = 4488.128457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.107 3.893 3 C -0.176 4.176 4 C -0.123 4.123 5 C -0.063 4.063 6 H 0.065 0.935 7 C 0.042 3.958 8 H 0.043 0.957 9 C -0.500 4.500 10 H 0.077 0.923 11 C 0.079 3.921 12 N -0.894 5.894 13 Si 0.862 3.138 14 H -0.270 1.270 15 H -0.290 1.290 16 H -0.264 1.264 17 C -0.032 4.032 18 C -0.100 4.100 19 C -0.127 4.127 20 C -0.150 4.150 21 C -0.125 4.125 22 C -0.142 4.142 23 C -0.153 4.153 24 C 0.062 3.938 25 O -0.382 6.382 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.264 0.736 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.783 0.783 -11.426 11.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.069 3.931 3 C -0.233 4.233 4 C -0.161 4.161 5 C -0.081 4.081 6 H 0.083 0.917 7 C 0.024 3.976 8 H 0.061 0.939 9 C -0.537 4.537 10 H 0.095 0.905 11 C -0.124 4.124 12 N -0.531 5.531 13 Si 0.690 3.310 14 H -0.196 1.196 15 H -0.216 1.216 16 H -0.189 1.189 17 C -0.033 4.033 18 C -0.118 4.118 19 C -0.145 4.145 20 C -0.169 4.169 21 C -0.143 4.143 22 C -0.160 4.160 23 C -0.191 4.191 24 C -0.015 4.015 25 O -0.302 6.302 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.100 0.900 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.617 0.682 -11.341 11.476 hybrid contribution 0.501 -1.027 0.550 1.268 sum 2.118 -0.345 -10.792 11.003 Atomic orbital electron populations 1.21729 0.93145 1.02463 1.01858 1.21587 0.94162 0.91210 0.86183 1.22413 1.02174 0.96718 1.01984 1.22102 0.96077 1.00968 0.96951 1.21091 0.94658 0.99168 0.93206 0.91699 1.18468 0.87075 0.97376 0.94727 0.93889 1.20811 1.44757 0.97179 0.90988 0.90515 1.24963 0.94161 0.97915 0.95323 1.69900 1.48915 1.35766 0.98503 0.87031 0.79100 0.87205 0.77684 1.19567 1.21640 1.18866 1.20738 0.98562 0.91951 0.92042 1.20953 0.92862 0.98877 0.99078 1.21063 0.94959 0.97180 1.01271 1.20842 0.98695 0.93099 1.04229 1.20941 0.94235 0.97519 1.01621 1.21056 0.94178 0.97784 1.02996 1.22329 1.00723 1.00287 0.95776 1.22517 0.81458 0.99333 0.98172 1.87868 1.20887 1.77727 1.43681 0.91107 0.92609 0.92117 0.91808 0.92815 0.91427 0.92029 0.89459 0.92621 0.86279 0.87247 0.87472 0.87466 0.87568 0.91352 0.91819 0.89990 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.85 37.16 0.33 -1.51 16 2 C 0.11 1.67 1.11 -90.57 -0.10 1.57 16 3 C -0.18 -2.48 7.94 37.16 0.29 -2.19 16 4 C -0.12 -2.24 3.90 -26.59 -0.10 -2.34 16 5 C -0.06 -1.16 1.40 -90.43 -0.13 -1.29 16 6 H 0.06 1.21 6.18 -51.93 -0.32 0.89 16 7 C 0.04 0.92 1.15 -92.92 -0.11 0.82 16 8 H 0.04 0.99 5.18 -51.93 -0.27 0.72 16 9 C -0.50 -12.87 7.11 -34.44 -0.24 -13.11 16 10 H 0.08 2.13 7.99 -52.48 -0.42 1.71 16 11 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 12 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 13 Si 0.86 21.19 26.64 -169.99 -4.53 16.66 16 14 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.26 -6.18 6.33 56.52 0.36 -5.82 16 17 C -0.03 -0.67 3.23 -104.62 -0.34 -1.01 16 18 C -0.10 -1.98 8.81 -39.58 -0.35 -2.33 16 19 C -0.13 -2.22 10.05 -39.58 -0.40 -2.61 16 20 C -0.15 -2.51 10.05 -39.58 -0.40 -2.90 16 21 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 22 C -0.14 -2.79 9.16 -39.58 -0.36 -3.15 16 23 C -0.15 -2.52 5.12 -26.58 -0.14 -2.65 16 24 C 0.06 0.91 6.51 37.21 0.24 1.15 16 25 O -0.38 -6.22 10.24 -35.23 -0.36 -6.58 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.92 4.98 -51.93 -0.26 0.66 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.71 7.31 -51.93 -0.38 1.34 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.12 2.38 7.75 -52.49 -0.41 1.97 16 36 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 38 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 39 H 0.11 2.02 7.95 -52.49 -0.42 1.60 16 40 H 0.07 1.11 7.35 -51.93 -0.38 0.73 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.66 6.34 -51.93 -0.33 0.33 16 LS Contribution 329.92 15.07 4.97 4.97 Total: -1.00 -28.59 329.92 -8.45 -37.03 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -7.01 Total: 5.52 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: -2.29 Total: -32.05 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.77 Total: -25.55 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.36 Total: -6.58 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.53 Total: 16.66 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.59 -8.45 -37.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000288902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.203 kcal (2) G-P(sol) polarization free energy of solvation -28.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds