Wall clock time and date at job start Mon Mar 30 2020 20:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30175 * 125.74530 * 2 1 4 4 N 1.39990 * 109.70766 * 180.02562 * 3 2 1 5 5 C 1.46490 * 125.88111 * 180.02562 * 4 3 2 6 6 C 1.36903 * 108.23368 * 359.97438 * 4 3 2 7 7 N 1.32872 * 133.41202 * 180.02562 * 6 4 3 8 8 C 1.31646 * 121.80825 * 179.97438 * 7 6 4 9 9 C 1.38424 * 121.60127 * 359.96920 * 8 7 6 10 10 C 1.38938 * 119.44793 * 0.03243 * 9 8 7 11 11 N 1.38811 * 121.01578 * 180.02562 * 10 9 8 12 12 C 1.46493 * 120.00464 * 5.71014 * 11 10 9 13 13 C 1.52999 * 109.47347 * 180.02562 * 12 11 10 14 14 C 1.53007 * 109.47018 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47005 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99899 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99804 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00544 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99826 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46962 * 60.00300 * 19 17 15 21 21 H 1.48503 * 109.47108 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47583 * 300.00348 * 19 17 15 23 23 C 1.40627 * 106.42580 * 0.25294 * 6 4 3 24 24 H 1.09002 * 109.47130 * 95.83602 * 1 2 3 25 25 H 1.08996 * 109.47166 * 215.83630 * 1 2 3 26 26 H 1.09000 * 109.46937 * 335.84037 * 1 2 3 27 27 H 1.09006 * 109.47162 * 269.97407 * 5 4 3 28 28 H 1.09003 * 109.47513 * 29.97448 * 5 4 3 29 29 H 1.09002 * 109.47469 * 149.97704 * 5 4 3 30 30 H 1.07998 * 119.20328 * 179.97438 * 8 7 6 31 31 H 1.07999 * 120.27164 * 180.02562 * 9 8 7 32 32 H 0.97011 * 119.99571 * 185.71386 * 11 10 9 33 33 H 1.09006 * 109.46990 * 60.00440 * 12 11 10 34 34 H 1.08997 * 109.47212 * 300.00694 * 12 11 10 35 35 H 1.08999 * 109.47224 * 299.99968 * 13 12 11 36 36 H 1.09007 * 109.47230 * 60.00528 * 13 12 11 37 37 H 1.08999 * 109.47115 * 300.00056 * 14 13 12 38 38 H 1.08996 * 109.47077 * 60.00521 * 14 13 12 39 39 H 0.96999 * 120.00751 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0565 0.0000 4 7 3.6129 0.6698 -0.0006 5 6 4.7660 1.5733 -0.0002 6 6 3.6654 -0.6982 -0.0004 7 7 4.6649 -1.5737 -0.0003 8 6 4.4497 -2.8725 0.0004 9 6 3.1680 -3.3954 0.0017 10 6 2.0785 -2.5331 0.0016 11 7 0.7794 -3.0221 0.0035 12 6 0.5386 -4.4614 0.1318 13 6 -0.9673 -4.7310 0.1050 14 6 -1.2187 -6.2343 0.2384 15 6 -2.7019 -6.4999 0.2114 16 1 -3.3958 -5.6786 0.1090 17 6 -3.1730 -7.7913 0.3175 18 7 -2.3282 -8.7914 0.4418 19 14 -5.0115 -8.1204 0.2849 20 1 -5.5783 -7.6362 -0.9996 21 1 -5.2556 -9.5795 0.4142 22 1 -5.6623 -7.4073 1.4131 23 6 2.3327 -1.1473 -0.0056 24 1 -0.3633 -0.1045 -1.0224 25 1 -0.3633 -0.8331 0.6016 26 1 -0.3633 0.9377 0.4206 27 1 5.0520 1.7978 -1.0279 28 1 4.5031 2.4978 0.5139 29 1 5.6009 1.0967 0.5134 30 1 5.2936 -3.5464 0.0000 31 1 3.0162 -4.4646 0.0027 32 1 0.0309 -2.4107 -0.0803 33 1 0.9549 -4.8169 1.0744 34 1 1.0158 -4.9849 -0.6966 35 1 -1.4449 -4.2075 0.9332 36 1 -1.3833 -4.3757 -0.8378 37 1 -0.7412 -6.7575 -0.5901 38 1 -0.8026 -6.5901 1.1809 39 1 -2.6596 -9.6999 0.5168 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420588317.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:17 Heat of formation + Delta-G solvation = 65.666173 kcal Electronic energy + Delta-G solvation = -20164.569932 eV Core-core repulsion = 17107.121981 eV Total energy + Delta-G solvation = -3057.447951 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.68625 -39.41408 -37.86481 -35.88158 -34.82153 -33.39395 -31.16880 -30.99140 -30.38721 -28.11161 -26.54984 -24.99854 -24.52620 -22.85394 -22.05338 -20.74006 -18.67704 -18.56303 -18.03388 -17.34850 -16.94974 -16.48398 -16.35656 -16.26919 -15.15801 -15.10016 -14.64081 -14.37402 -14.33554 -14.22888 -13.79297 -13.77621 -13.60059 -13.51230 -12.97061 -12.81775 -12.66416 -12.49928 -12.34800 -12.12818 -11.82054 -11.47278 -11.45133 -11.19107 -10.52538 -10.40919 -10.18486 -9.57397 -8.56511 -8.18369 -6.28642 -0.03257 0.49653 1.27131 1.43027 1.44681 1.47266 1.52511 2.23056 2.43949 2.89429 3.15923 3.23002 3.53423 3.69768 3.86979 4.10051 4.19623 4.25158 4.30043 4.40700 4.43873 4.56902 4.62725 4.64428 4.66390 4.84714 4.94514 4.98143 5.01369 5.07840 5.19054 5.24960 5.52510 5.58205 5.74976 5.86800 5.98291 6.08051 6.26736 6.51457 6.58935 6.88566 7.10493 7.40752 8.93084 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.034579 B = 0.003194 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.548187 B = 8763.364668 C = 9533.503336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.114 3.886 3 N -0.284 5.284 4 N -0.404 5.404 5 C 0.111 3.889 6 C 0.328 3.672 7 N -0.571 5.571 8 C 0.210 3.790 9 C -0.317 4.317 10 C 0.325 3.675 11 N -0.713 5.713 12 C 0.127 3.873 13 C -0.107 4.107 14 C 0.027 3.973 15 C -0.544 4.544 16 H 0.062 0.938 17 C 0.001 3.999 18 N -0.932 5.932 19 Si 0.960 3.040 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.267 1.267 23 C -0.310 4.310 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.196 0.804 31 H 0.150 0.850 32 H 0.408 0.592 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.062 0.938 37 H -0.002 1.002 38 H -0.003 1.003 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.155 17.205 -1.053 20.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.061 4.061 3 N -0.100 5.100 4 N -0.194 5.194 5 C -0.029 4.029 6 C 0.087 3.913 7 N -0.292 5.292 8 C 0.045 3.955 9 C -0.346 4.346 10 C 0.205 3.795 11 N -0.339 5.339 12 C 0.004 3.996 13 C -0.145 4.145 14 C -0.011 4.011 15 C -0.582 4.582 16 H 0.080 0.920 17 C -0.197 4.197 18 N -0.572 5.572 19 Si 0.785 3.215 20 H -0.192 1.192 21 H -0.211 1.211 22 H -0.192 1.192 23 C -0.324 4.324 24 H 0.118 0.882 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.096 0.904 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.212 0.788 31 H 0.167 0.833 32 H 0.246 0.754 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.104 18.625 -1.016 22.236 hybrid contribution -1.748 -1.495 -0.008 2.300 sum 10.357 17.130 -1.024 20.044 Atomic orbital electron populations 1.20528 0.84029 1.04951 1.04693 1.22607 0.98081 0.88496 0.96902 1.76691 0.86589 1.23081 1.23649 1.48409 1.05130 1.01779 1.64079 1.21972 0.83697 0.93268 1.03965 1.19197 0.90171 0.86681 0.95222 1.66840 1.33218 1.03104 1.26047 1.22902 0.96767 0.89152 0.86651 1.21580 0.92228 1.01047 1.19698 1.17681 0.86436 0.89450 0.85962 1.45049 1.04283 1.08381 1.76219 1.21514 0.97175 0.79386 1.01557 1.21605 0.93297 0.97885 1.01669 1.18908 0.95319 0.91397 0.95432 1.21672 0.93710 0.92857 1.49918 0.91978 1.25918 1.02623 0.96278 0.94871 1.70067 1.36323 0.99715 1.51108 0.85571 0.79837 0.76947 0.79126 1.19241 1.21146 1.19237 1.19140 0.95202 0.93565 1.24469 0.88197 0.89624 0.88605 0.90356 0.88211 0.88727 0.78760 0.83255 0.75358 0.91663 0.91471 0.91972 0.91952 0.98383 0.98437 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 9.49 71.24 0.68 -0.83 16 2 C 0.11 2.99 7.24 43.57 0.32 3.30 16 3 N -0.28 -7.89 12.44 -46.76 -0.58 -8.47 16 4 N -0.40 -10.91 4.06 -366.67 -1.49 -12.40 16 5 C 0.11 1.97 11.48 127.77 1.47 3.44 16 6 C 0.33 9.72 7.99 133.99 1.07 10.79 16 7 N -0.57 -15.88 10.39 -193.27 -2.01 -17.89 16 8 C 0.21 4.90 11.14 84.76 0.94 5.85 16 9 C -0.32 -7.94 9.37 22.48 0.21 -7.73 16 10 C 0.32 8.90 6.72 38.86 0.26 9.16 16 11 N -0.71 -18.39 5.71 -338.41 -1.93 -20.32 16 12 C 0.13 3.70 5.00 86.38 0.43 4.13 16 13 C -0.11 -3.76 5.27 30.60 0.16 -3.60 16 14 C 0.03 1.31 4.97 29.85 0.15 1.46 16 15 C -0.54 -29.21 9.11 25.60 0.23 -28.97 16 16 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 17 C 0.00 0.06 5.46 84.65 0.46 0.52 16 18 N -0.93 -54.82 13.29 21.44 0.28 -54.53 16 19 Si 0.96 42.67 29.54 68.60 2.03 44.70 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 C -0.31 -8.94 6.11 -21.28 -0.13 -9.07 16 24 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.09 1.43 6.37 -2.39 -0.02 1.42 16 26 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.20 2.96 8.06 -2.91 -0.02 2.94 16 31 H 0.15 3.37 6.86 -2.91 -0.02 3.35 16 32 H 0.41 9.32 5.49 -92.70 -0.51 8.81 16 33 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.07 1.95 7.78 -2.39 -0.02 1.93 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 37 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 38 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 39 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -68.52 328.10 3.10 -65.42 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.55 Total: 15.03 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 6.25 Total: -11.55 kcal Atomic # 7 Polarization: -107.88 SS G_CDS: -5.73 Total: -113.60 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -68.52 3.10 -65.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420588317.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.088 kcal (2) G-P(sol) polarization free energy of solvation -68.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds