Wall clock time and date at job start Mon Mar 30 2020 20:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46843 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46988 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.47139 * 179.97438 * 11 10 9 13 13 C 1.46893 * 111.00154 * 179.97438 * 12 11 10 14 14 H 1.09004 * 108.42528 * 34.99987 * 13 12 11 15 15 C 1.51597 * 108.49263 * 152.63669 * 13 12 11 16 16 C 1.53266 * 110.81834 * 189.44549 * 15 13 12 17 17 C 1.51348 * 108.26989 * 274.32916 * 16 15 13 18 18 C 1.38626 * 119.75254 * 250.86394 * 17 16 15 19 19 C 1.38771 * 117.94831 * 180.38881 * 18 17 16 20 20 C 1.38223 * 119.08982 * 359.97438 * 19 18 17 21 21 N 1.31891 * 120.96702 * 359.91459 * 20 19 18 22 22 C 1.32192 * 121.38673 * 0.02562 * 21 20 19 23 23 C 1.51551 * 119.31628 * 180.15412 * 22 21 20 24 24 C 1.51593 * 108.49085 * 277.36071 * 13 12 11 25 25 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 26 26 H 1.09001 * 109.47363 * 299.99145 * 9 7 2 27 27 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 28 28 H 1.09006 * 109.47053 * 299.99704 * 10 9 7 29 29 H 1.08997 * 109.47419 * 60.00089 * 10 9 7 30 30 H 1.08998 * 109.46983 * 299.99930 * 11 10 9 31 31 H 1.08997 * 109.47600 * 59.99950 * 11 10 9 32 32 H 1.00902 * 110.99925 * 303.95189 * 12 11 10 33 33 H 1.08997 * 109.19936 * 309.63732 * 15 13 12 34 34 H 1.09001 * 109.19853 * 68.92426 * 15 13 12 35 35 H 1.09005 * 109.69930 * 154.70699 * 16 15 13 36 36 H 1.08999 * 109.91595 * 34.08156 * 16 15 13 37 37 H 1.07998 * 121.02447 * 0.34739 * 18 17 16 38 38 H 1.08000 * 120.45484 * 180.02562 * 19 18 17 39 39 H 1.08000 * 119.51976 * 179.89033 * 20 19 18 40 40 H 1.09002 * 109.64027 * 349.92728 * 23 22 21 41 41 H 1.08999 * 109.81147 * 229.40988 * 23 22 21 42 42 H 1.08999 * 109.16616 * 290.86131 * 24 13 12 43 43 H 1.08999 * 109.16677 * 50.12162 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 6 2.2451 -3.6621 -0.0172 11 6 1.4800 -4.9871 -0.0247 12 7 2.4346 -6.1037 -0.0299 13 6 1.7343 -7.3949 -0.0366 14 1 0.8256 -7.2910 -0.6296 15 6 2.6277 -8.4230 -0.7022 16 6 1.8648 -9.7292 -0.9492 17 6 1.9458 -10.5707 0.3062 18 6 2.7226 -11.7188 0.3158 19 6 2.7634 -12.4666 1.4841 20 6 2.0363 -12.0413 2.5800 21 7 1.3116 -10.9406 2.5279 22 6 1.2531 -10.2061 1.4304 23 6 0.4081 -8.9480 1.4236 24 6 1.3426 -7.7368 1.3874 25 1 -0.4850 0.8401 0.0040 26 1 0.6240 -2.5614 0.8771 27 1 0.6246 -2.5525 -0.9029 28 1 2.8725 -3.6002 -0.9065 29 1 2.8711 -3.6087 0.8735 30 1 0.8524 -5.0492 0.8642 31 1 0.8543 -5.0404 -0.9157 32 1 3.0700 -6.0326 -0.8105 33 1 2.9784 -8.0292 -1.6561 34 1 3.4857 -8.6217 -0.0600 35 1 2.3183 -10.2678 -1.7814 36 1 0.8215 -9.5122 -1.1783 37 1 3.2783 -12.0223 -0.5591 38 1 3.3559 -13.3681 1.5366 39 1 2.0617 -12.6190 3.4922 40 1 -0.2027 -8.9121 2.3257 41 1 -0.2362 -8.9405 0.5445 42 1 2.2414 -7.9609 1.9618 43 1 0.8362 -6.8814 1.8344 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421825602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:22 Heat of formation + Delta-G solvation = -13.514844 kcal Electronic energy + Delta-G solvation = -20436.912726 eV Core-core repulsion = 17479.571572 eV Total energy + Delta-G solvation = -2957.341154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.63149 -39.10268 -36.59089 -35.10599 -34.50023 -33.20158 -31.65654 -30.88268 -28.09667 -26.07560 -25.50910 -24.15366 -23.45251 -22.12364 -21.54912 -21.04837 -18.47379 -17.77442 -17.53413 -16.77334 -16.55879 -16.02591 -15.82641 -15.64264 -15.43924 -15.13517 -14.48160 -14.17277 -13.99074 -13.87831 -13.73998 -13.56971 -13.27598 -13.00797 -12.77008 -12.69739 -12.67055 -12.45000 -12.20880 -11.89532 -11.70375 -11.51464 -11.42831 -11.32047 -11.03904 -10.61120 -10.54836 -10.34369 -9.69582 -9.33748 -8.20007 -6.31183 0.22640 0.38631 1.39847 1.43266 1.51203 2.41148 2.85917 3.12880 3.14419 3.36949 3.60955 3.81431 3.98050 4.03929 4.07141 4.19616 4.28150 4.34062 4.40998 4.44521 4.49541 4.55604 4.61705 4.68886 4.74256 4.79762 4.90431 4.97460 5.00987 5.11867 5.16603 5.16893 5.24637 5.26975 5.31638 5.35737 5.45374 5.52458 5.75796 5.85826 5.86143 6.10946 6.27903 6.55417 6.85707 7.10172 7.37962 8.91777 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.045301 B = 0.002677 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.943664 B =10458.391926 C =10662.185462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.282 1.282 5 H -0.268 1.268 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.092 4.092 11 C 0.073 3.927 12 N -0.695 5.695 13 C 0.090 3.910 14 H 0.042 0.958 15 C -0.108 4.108 16 C -0.069 4.069 17 C -0.137 4.137 18 C -0.076 4.076 19 C -0.174 4.174 20 C 0.076 3.924 21 N -0.516 5.516 22 C 0.113 3.887 23 C -0.065 4.065 24 C -0.092 4.092 25 H 0.264 0.736 26 H -0.011 1.011 27 H -0.008 1.008 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.346 0.654 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.171 0.829 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.050 0.950 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.517 -27.373 -1.850 27.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.208 1.208 5 H -0.193 1.193 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.130 4.130 11 C -0.056 4.056 12 N -0.327 5.327 13 C -0.019 4.019 14 H 0.060 0.940 15 C -0.146 4.146 16 C -0.107 4.107 17 C -0.139 4.139 18 C -0.101 4.101 19 C -0.194 4.194 20 C -0.081 4.081 21 N -0.225 5.225 22 C -0.023 4.023 23 C -0.104 4.104 24 C -0.131 4.131 25 H 0.073 0.927 26 H 0.008 0.992 27 H 0.010 0.990 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.166 0.834 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.180 0.820 38 H 0.181 0.819 39 H 0.189 0.811 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.069 0.931 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.982 -26.983 -0.431 27.442 hybrid contribution 0.152 0.848 -1.180 1.461 sum 5.134 -26.135 -1.611 26.683 Atomic orbital electron populations 1.70095 1.07818 1.27851 1.51675 1.26009 0.95804 1.03436 0.94711 0.85490 0.78275 0.78004 0.79220 1.20754 1.19257 1.19023 1.21684 0.93537 0.92458 1.50576 0.92262 1.18963 0.94421 0.93127 0.94687 1.21374 0.97993 0.93023 1.00629 1.21864 0.93992 0.90201 0.99528 1.60492 1.20120 1.01356 1.50697 1.21144 0.96123 0.88980 0.95653 0.94044 1.21435 0.98096 0.94111 1.00909 1.20774 1.01916 0.94066 0.93939 1.20718 0.98537 0.97404 0.97207 1.21968 0.96024 0.92785 0.99370 1.22498 1.00985 1.02236 0.93669 1.23194 0.92618 0.92538 0.99761 1.67744 1.19967 1.06899 1.27920 1.21204 0.96256 0.95660 0.89228 1.20685 0.96457 0.89531 1.03712 1.21108 0.98733 0.96485 0.96755 0.92748 0.99243 0.98988 0.92945 0.93229 0.92360 0.95660 0.83440 0.89828 0.91957 0.88141 0.90039 0.81975 0.81902 0.81147 0.90606 0.88913 0.93098 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.88 13.29 21.45 0.28 -57.59 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 5 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.54 -31.79 9.11 25.60 0.23 -31.56 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.09 -3.90 5.41 30.60 0.17 -3.73 16 11 C 0.07 2.55 5.44 86.30 0.47 3.01 16 12 N -0.69 -19.51 6.27 -496.37 -3.11 -22.62 16 13 C 0.09 2.08 2.03 43.99 0.09 2.16 16 14 H 0.04 0.96 7.42 -2.38 -0.02 0.94 16 15 C -0.11 -1.87 4.96 30.22 0.15 -1.72 16 16 C -0.07 -0.97 5.47 30.14 0.16 -0.80 16 17 C -0.14 -2.43 4.98 -19.86 -0.10 -2.52 16 18 C -0.08 -1.04 9.81 22.49 0.22 -0.82 16 19 C -0.17 -2.33 10.12 22.39 0.23 -2.11 16 20 C 0.08 1.37 11.17 84.68 0.95 2.31 16 21 N -0.52 -12.49 10.29 -183.70 -1.89 -14.39 16 22 C 0.11 2.53 5.89 42.48 0.25 2.79 16 23 C -0.07 -1.45 5.57 30.13 0.17 -1.28 16 24 C -0.09 -2.31 5.13 30.14 0.15 -2.15 16 25 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 26 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 27 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 28 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.06 2.13 7.05 -2.39 -0.02 2.11 16 31 H 0.03 0.87 8.03 -2.39 -0.02 0.85 16 32 H 0.35 8.72 8.08 -89.69 -0.72 7.99 16 33 H 0.08 1.23 7.83 -2.39 -0.02 1.21 16 34 H 0.06 1.22 7.85 -2.39 -0.02 1.20 16 35 H 0.10 0.94 7.95 -2.38 -0.02 0.92 16 36 H 0.08 1.14 6.93 -2.39 -0.02 1.12 16 37 H 0.16 1.23 8.02 -2.91 -0.02 1.20 16 38 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 39 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.08 1.77 8.12 -2.39 -0.02 1.75 16 41 H 0.09 1.77 6.92 -2.39 -0.02 1.76 16 42 H 0.05 1.42 7.85 -2.39 -0.02 1.40 16 43 H 0.06 1.65 6.97 -2.39 -0.02 1.63 16 Total: -1.00 -69.74 339.99 1.32 -68.42 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.26 Total: 13.75 kcal Atomic # 6 Polarization: -38.29 SS G_CDS: 3.75 Total: -34.54 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -4.72 Total: -94.60 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -69.74 1.32 -68.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421825602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.908 kcal (2) G-P(sol) polarization free energy of solvation -69.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds