Wall clock time and date at job start Mon Mar 30 2020 20:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46990 * 2 1 4 4 C 1.52995 * 109.47555 * 239.99675 * 2 1 3 5 5 C 1.53005 * 109.47067 * 119.99649 * 2 1 3 6 6 N 1.46491 * 109.47011 * 59.99995 * 5 2 1 7 7 C 1.46497 * 120.00507 * 269.99958 * 6 5 2 8 8 C 1.50702 * 109.47476 * 270.00552 * 7 6 5 9 9 H 1.08004 * 119.99587 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00475 * 179.97438 * 8 7 6 11 11 N 1.31508 * 119.99611 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99834 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46869 * 90.00617 * 12 10 8 14 14 H 1.48505 * 109.46580 * 209.99635 * 12 10 8 15 15 H 1.48492 * 109.47377 * 330.00229 * 12 10 8 16 16 C 1.38982 * 119.99925 * 90.00331 * 6 5 2 17 17 C 1.39609 * 120.02495 * 184.99643 * 16 6 5 18 18 N 1.31944 * 120.12206 * 179.97438 * 17 16 6 19 19 C 1.32159 * 120.18640 * 0.02721 * 18 17 16 20 20 C 1.39377 * 120.04762 * 359.97438 * 19 18 17 21 21 C 1.43203 * 120.06275 * 180.02562 * 20 19 18 22 22 N 6.14801 * 144.75456 * 202.51668 * 2 1 3 23 23 N 1.32383 * 120.02369 * 5.02194 * 16 6 5 24 24 H 1.08995 * 109.47676 * 300.00290 * 1 2 3 25 25 H 1.09000 * 109.47202 * 60.00796 * 1 2 3 26 26 H 1.09001 * 109.47051 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47102 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46498 * 299.99635 * 3 2 1 29 29 H 1.08995 * 109.47148 * 59.99386 * 3 2 1 30 30 H 1.09001 * 109.47023 * 300.00118 * 4 2 1 31 31 H 1.09000 * 109.47250 * 59.99559 * 4 2 1 32 32 H 1.09003 * 109.47454 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.46559 * 299.99999 * 5 2 1 34 34 H 1.08997 * 109.47064 * 180.02562 * 5 2 1 35 35 H 1.09005 * 109.47064 * 30.00062 * 7 6 5 36 36 H 1.08996 * 109.47986 * 150.00336 * 7 6 5 37 37 H 0.96998 * 119.99795 * 180.02562 * 11 10 8 38 38 H 1.08000 * 119.94471 * 0.02562 * 17 16 6 39 39 H 1.07997 * 119.97708 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2493 6 7 1.5517 -2.1023 1.2494 7 6 0.2716 -2.4267 1.8837 8 6 0.5024 -2.7746 3.3318 9 1 1.5026 -2.7563 3.7387 10 6 -0.5634 -3.1163 4.1371 11 7 -1.7813 -3.1391 3.6414 12 14 -0.2771 -3.5482 5.9318 13 1 -0.3679 -2.3173 6.7576 14 1 -1.3076 -4.5203 6.3773 15 1 1.0714 -4.1501 6.0870 16 6 2.3028 -3.1050 0.6477 17 6 1.7915 -4.4008 0.5551 18 7 2.5028 -5.3540 -0.0162 19 6 3.7022 -5.0872 -0.5028 20 6 4.2199 -3.7962 -0.4144 21 6 5.5193 -3.5066 -0.9421 22 7 6.5510 -3.2774 -1.3587 23 7 3.5039 -2.8321 0.1624 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6767 -1.7490 -1.2491 31 1 1.6767 -0.2076 -2.1392 32 1 3.1301 -0.7209 -1.2493 33 1 1.6766 -0.2072 2.1392 34 1 3.1300 -0.7208 1.2496 35 1 -0.3946 -1.5664 1.8185 36 1 -0.1817 -3.2767 1.3737 37 1 -2.5311 -3.3790 4.2080 38 1 0.8117 -4.6233 0.9511 39 1 4.2816 -5.8701 -0.9694 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568782230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:10 Heat of formation + Delta-G solvation = 79.245255 kcal Electronic energy + Delta-G solvation = -21459.243181 eV Core-core repulsion = 18402.384063 eV Total energy + Delta-G solvation = -3056.859118 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.81865 -38.17691 -36.56561 -34.97414 -33.83874 -32.67984 -30.38178 -28.06974 -27.03699 -26.84599 -25.82576 -24.87933 -23.39275 -21.66345 -18.85528 -18.61688 -17.23273 -16.77527 -16.52004 -15.69842 -15.21599 -14.80966 -14.39215 -14.22858 -13.78183 -13.39466 -13.09504 -13.07550 -12.89263 -12.63347 -12.42663 -12.22899 -11.93884 -11.63253 -11.41190 -11.36283 -11.22652 -11.05288 -10.93527 -10.89327 -10.58733 -10.41511 -10.30643 -10.17452 -9.91436 -9.28685 -8.85285 -8.62375 -7.09893 -6.24824 -4.35020 0.74192 1.65431 2.51068 3.04806 3.18555 3.26644 3.29294 3.42672 3.77323 4.20000 4.28288 4.72435 4.83693 5.01794 5.08232 5.09411 5.12919 5.29420 5.48263 5.76620 5.78470 5.79451 5.84296 6.01586 6.06833 6.12994 6.20632 6.24772 6.39861 6.45882 6.49980 6.63205 6.69574 6.79729 7.00488 7.24478 7.41560 7.66999 7.82473 7.92853 8.02985 8.24226 8.72895 9.33275 10.79161 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.014204 B = 0.006858 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.816630 B = 4081.734860 C = 5322.463338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 C -0.136 4.136 4 C -0.129 4.129 5 C 0.134 3.866 6 N -0.562 5.562 7 C 0.242 3.758 8 C -0.542 4.542 9 H 0.061 0.939 10 C 0.068 3.932 11 N -0.889 5.889 12 Si 0.897 3.103 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.382 3.618 17 C 0.036 3.964 18 N -0.405 5.405 19 C 0.003 3.997 20 C 0.181 3.819 21 C 0.283 3.717 22 N -0.405 5.405 23 N -0.489 5.489 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.039 0.961 37 H 0.267 0.733 38 H 0.183 0.817 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.375 2.965 -7.048 8.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 C -0.194 4.194 4 C -0.186 4.186 5 C 0.010 3.990 6 N -0.269 5.269 7 C 0.124 3.876 8 C -0.581 4.581 9 H 0.080 0.920 10 C -0.136 4.136 11 N -0.527 5.527 12 Si 0.724 3.276 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.198 1.198 16 C 0.139 3.861 17 C -0.138 4.138 18 N -0.116 5.116 19 C -0.159 4.159 20 C 0.039 3.961 21 C -0.035 4.035 22 N -0.082 5.082 23 N -0.215 5.215 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.199 0.801 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.630 3.437 -7.530 10.010 hybrid contribution -0.348 -0.224 1.301 1.365 sum 5.281 3.213 -6.229 8.776 Atomic orbital electron populations 1.21968 0.94276 1.02689 1.00926 1.20974 0.96261 0.95101 0.96230 1.21781 1.00752 0.95345 1.01502 1.21791 1.01001 0.99782 0.96023 1.21464 0.99384 0.81359 0.96796 1.47258 1.21438 1.04287 1.53876 1.19694 0.77842 0.97949 0.92160 1.21496 0.94152 1.47776 0.94652 0.92046 1.24906 0.94865 0.94879 0.98904 1.69900 0.98748 1.47538 1.36531 0.86503 0.78192 0.78399 0.84465 1.20522 1.20964 1.19795 1.19265 0.87661 0.89597 0.89613 1.23744 1.02035 0.88367 0.99676 1.68364 1.04703 1.33343 1.05223 1.23025 0.94494 0.94682 1.03713 1.16975 0.88779 0.91661 0.98659 1.24992 0.92009 0.93115 0.93409 1.81200 1.11094 1.07143 1.08767 1.67856 1.05953 1.33520 1.14160 0.92532 0.93670 0.91550 0.92824 0.92899 0.92629 0.93241 0.93869 0.92396 0.90281 0.90525 0.92928 0.94363 0.92359 0.80059 0.81936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 7.23 37.16 0.27 -1.78 16 2 C -0.08 -1.18 0.84 -154.51 -0.13 -1.31 16 3 C -0.14 -1.62 8.47 37.16 0.31 -1.31 16 4 C -0.13 -1.83 7.18 37.15 0.27 -1.56 16 5 C 0.13 2.17 4.62 -4.04 -0.02 2.15 16 6 N -0.56 -10.20 2.07 -175.07 -0.36 -10.56 16 7 C 0.24 5.12 3.92 -5.19 -0.02 5.10 16 8 C -0.54 -13.13 9.39 -34.44 -0.32 -13.45 16 9 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 10 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -23.14 13.29 55.43 0.74 -22.40 16 12 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 C 0.38 6.74 5.61 -154.88 -0.87 5.87 16 17 C 0.04 0.62 10.43 -16.99 -0.18 0.45 16 18 N -0.40 -6.60 10.48 -12.53 -0.13 -6.73 16 19 C 0.00 0.04 10.91 -16.99 -0.19 -0.14 16 20 C 0.18 2.71 6.58 -84.91 -0.56 2.15 16 21 C 0.28 4.12 15.56 -22.47 -0.35 3.77 16 22 N -0.40 -6.29 18.54 41.84 0.78 -5.52 16 23 N -0.49 -8.12 7.64 -10.15 -0.08 -8.20 16 24 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.08 5.99 -51.93 -0.31 0.77 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.78 6.21 -51.93 -0.32 0.46 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.85 7.70 -51.93 -0.40 0.45 16 33 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 34 H 0.08 1.25 7.32 -51.93 -0.38 0.87 16 35 H 0.05 1.16 6.05 -51.93 -0.31 0.84 16 36 H 0.04 0.84 5.99 -51.93 -0.31 0.53 16 37 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 38 H 0.18 3.31 6.03 -52.49 -0.32 2.99 16 39 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 325.39 15.07 4.90 4.90 Total: -1.00 -25.27 325.39 -6.33 -31.60 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.27 Total: 0.55 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.88 Total: 1.51 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.94 Total: -53.41 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -25.27 -6.33 -31.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568782230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.849 kcal (2) G-P(sol) polarization free energy of solvation -25.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds