Wall clock time and date at job start Mon Mar 30 2020 20:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46990 * 2 1 4 4 C 1.52995 * 109.47555 * 239.99675 * 2 1 3 5 5 C 1.53005 * 109.47067 * 119.99649 * 2 1 3 6 6 N 1.46491 * 109.47011 * 59.99995 * 5 2 1 7 7 C 1.46497 * 120.00507 * 269.99958 * 6 5 2 8 8 C 1.50702 * 109.47476 * 270.00552 * 7 6 5 9 9 H 1.08004 * 119.99587 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00475 * 179.97438 * 8 7 6 11 11 N 1.31508 * 119.99611 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99834 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46869 * 90.00617 * 12 10 8 14 14 H 1.48505 * 109.46580 * 209.99635 * 12 10 8 15 15 H 1.48492 * 109.47377 * 330.00229 * 12 10 8 16 16 C 1.38982 * 119.99925 * 90.00331 * 6 5 2 17 17 C 1.39609 * 120.02495 * 184.99643 * 16 6 5 18 18 N 1.31944 * 120.12206 * 179.97438 * 17 16 6 19 19 C 1.32159 * 120.18640 * 0.02721 * 18 17 16 20 20 C 1.39377 * 120.04762 * 359.97438 * 19 18 17 21 21 C 1.43203 * 120.06275 * 180.02562 * 20 19 18 22 22 N 6.14801 * 144.75456 * 202.51668 * 2 1 3 23 23 N 1.32383 * 120.02369 * 5.02194 * 16 6 5 24 24 H 1.08995 * 109.47676 * 300.00290 * 1 2 3 25 25 H 1.09000 * 109.47202 * 60.00796 * 1 2 3 26 26 H 1.09001 * 109.47051 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47102 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46498 * 299.99635 * 3 2 1 29 29 H 1.08995 * 109.47148 * 59.99386 * 3 2 1 30 30 H 1.09001 * 109.47023 * 300.00118 * 4 2 1 31 31 H 1.09000 * 109.47250 * 59.99559 * 4 2 1 32 32 H 1.09003 * 109.47454 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.46559 * 299.99999 * 5 2 1 34 34 H 1.08997 * 109.47064 * 180.02562 * 5 2 1 35 35 H 1.09005 * 109.47064 * 30.00062 * 7 6 5 36 36 H 1.08996 * 109.47986 * 150.00336 * 7 6 5 37 37 H 0.96998 * 119.99795 * 180.02562 * 11 10 8 38 38 H 1.08000 * 119.94471 * 0.02562 * 17 16 6 39 39 H 1.07997 * 119.97708 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2493 6 7 1.5517 -2.1023 1.2494 7 6 0.2716 -2.4267 1.8837 8 6 0.5024 -2.7746 3.3318 9 1 1.5026 -2.7563 3.7387 10 6 -0.5634 -3.1163 4.1371 11 7 -1.7813 -3.1391 3.6414 12 14 -0.2771 -3.5482 5.9318 13 1 -0.3679 -2.3173 6.7576 14 1 -1.3076 -4.5203 6.3773 15 1 1.0714 -4.1501 6.0870 16 6 2.3028 -3.1050 0.6477 17 6 1.7915 -4.4008 0.5551 18 7 2.5028 -5.3540 -0.0162 19 6 3.7022 -5.0872 -0.5028 20 6 4.2199 -3.7962 -0.4144 21 6 5.5193 -3.5066 -0.9421 22 7 6.5510 -3.2774 -1.3587 23 7 3.5039 -2.8321 0.1624 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6767 -1.7490 -1.2491 31 1 1.6767 -0.2076 -2.1392 32 1 3.1301 -0.7209 -1.2493 33 1 1.6766 -0.2072 2.1392 34 1 3.1300 -0.7208 1.2496 35 1 -0.3946 -1.5664 1.8185 36 1 -0.1817 -3.2767 1.3737 37 1 -2.5311 -3.3790 4.2080 38 1 0.8117 -4.6233 0.9511 39 1 4.2816 -5.8701 -0.9694 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568782230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:09 Heat of formation + Delta-G solvation = 67.413871 kcal Electronic energy + Delta-G solvation = -21459.756228 eV Core-core repulsion = 18402.384063 eV Total energy + Delta-G solvation = -3057.372165 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.13770 -39.45414 -37.79189 -36.32746 -35.25699 -34.40569 -31.74606 -29.64060 -28.09916 -28.05935 -27.27271 -26.16725 -24.99992 -23.08109 -20.14812 -19.86890 -18.60764 -18.52766 -17.85080 -17.09426 -16.58401 -16.45554 -15.69722 -15.48033 -15.03072 -14.65122 -14.44873 -14.33993 -14.22263 -14.13259 -13.77610 -13.47272 -13.21323 -12.97840 -12.94823 -12.67593 -12.52383 -12.45580 -12.42850 -12.39295 -12.04762 -11.87309 -11.64743 -11.49143 -11.41207 -10.74143 -10.58031 -10.12877 -8.57751 -8.08932 -6.31343 -0.54252 0.35350 1.28162 1.41545 1.45356 1.53084 1.81524 2.08340 2.40685 2.50340 2.92973 3.12962 3.43587 3.56155 3.80770 3.93962 3.94936 4.11953 4.21095 4.51930 4.58909 4.63570 4.79868 4.83661 4.95909 4.97186 5.04751 5.09498 5.09570 5.22539 5.24445 5.31063 5.38539 5.49832 5.55476 5.67446 5.89699 6.09055 6.17659 6.45656 6.58112 6.78337 6.95189 7.40017 8.86643 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.014204 B = 0.006858 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.816630 B = 4081.734860 C = 5322.463338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.080 4.080 3 C -0.130 4.130 4 C -0.119 4.119 5 C 0.136 3.864 6 N -0.570 5.570 7 C 0.261 3.739 8 C -0.546 4.546 9 H 0.049 0.951 10 C 0.027 3.973 11 N -0.916 5.916 12 Si 0.949 3.051 13 H -0.276 1.276 14 H -0.282 1.282 15 H -0.276 1.276 16 C 0.373 3.627 17 C 0.020 3.980 18 N -0.411 5.411 19 C 0.022 3.978 20 C 0.183 3.817 21 C 0.298 3.702 22 N -0.414 5.414 23 N -0.489 5.489 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.027 0.973 37 H 0.267 0.733 38 H 0.167 0.833 39 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.701 3.093 -7.754 10.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.081 4.081 3 C -0.188 4.188 4 C -0.176 4.176 5 C 0.012 3.988 6 N -0.277 5.277 7 C 0.141 3.859 8 C -0.585 4.585 9 H 0.067 0.933 10 C -0.174 4.174 11 N -0.555 5.555 12 Si 0.776 3.224 13 H -0.201 1.201 14 H -0.207 1.207 15 H -0.200 1.200 16 C 0.131 3.869 17 C -0.152 4.152 18 N -0.123 5.123 19 C -0.140 4.140 20 C 0.041 3.959 21 C -0.019 4.019 22 N -0.092 5.092 23 N -0.215 5.215 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.184 0.816 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 6.961 3.573 -8.237 11.361 hybrid contribution -0.646 -0.318 1.435 1.606 sum 6.316 3.254 -6.802 9.836 Atomic orbital electron populations 1.21893 0.94688 1.01313 1.01424 1.20942 0.95808 0.96288 0.95094 1.21735 1.01028 0.93644 1.02416 1.21688 1.00552 0.98811 0.96592 1.21522 0.99171 0.80531 0.97540 1.47008 1.20861 1.05203 1.54663 1.19237 0.79079 0.96861 0.90733 1.21727 0.93431 1.47090 0.96251 0.93254 1.25522 0.94776 0.95073 1.02028 1.69979 0.99287 1.48664 1.37605 0.85684 0.77749 0.78151 0.80844 1.20121 1.20724 1.20049 1.19189 0.88019 0.89414 0.90277 1.23534 1.01988 0.88818 1.00816 1.68396 1.05524 1.33019 1.05328 1.23639 0.93512 0.95208 1.01684 1.17099 0.88735 0.91814 0.98288 1.24691 0.91517 0.92742 0.92980 1.81234 1.11368 1.07434 1.09120 1.67805 1.05555 1.34302 1.13855 0.93227 0.91892 0.93849 0.92337 0.91449 0.92287 0.95140 0.92395 0.92804 0.91384 0.90599 0.93999 0.95492 0.92341 0.81571 0.77993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 7.23 71.98 0.52 -3.39 16 2 C -0.08 -2.18 0.84 -52.18 -0.04 -2.22 16 3 C -0.13 -2.87 8.47 71.98 0.61 -2.26 16 4 C -0.12 -3.24 7.18 71.98 0.52 -2.72 16 5 C 0.14 4.40 4.62 86.38 0.40 4.80 16 6 N -0.57 -21.09 2.07 -707.80 -1.46 -22.55 16 7 C 0.26 11.41 3.92 85.63 0.34 11.75 16 8 C -0.55 -27.01 9.39 25.60 0.24 -26.77 16 9 H 0.05 2.52 7.81 -2.91 -0.02 2.49 16 10 C 0.03 1.35 5.46 84.66 0.46 1.82 16 11 N -0.92 -48.48 13.29 21.45 0.28 -48.20 16 12 Si 0.95 40.96 29.54 68.60 2.03 42.98 16 13 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 14 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 15 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 16 C 0.37 13.17 5.61 133.19 0.75 13.92 16 17 C 0.02 0.72 10.43 85.01 0.89 1.61 16 18 N -0.41 -12.90 10.48 -193.55 -2.03 -14.92 16 19 C 0.02 0.57 10.91 84.92 0.93 1.50 16 20 C 0.18 5.09 6.58 40.45 0.27 5.36 16 21 C 0.30 7.96 15.56 88.33 1.37 9.34 16 22 N -0.41 -11.90 18.54 19.00 0.35 -11.55 16 23 N -0.49 -15.76 7.64 -186.03 -1.42 -17.18 16 24 H 0.05 1.47 8.08 -2.39 -0.02 1.45 16 25 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.04 1.44 5.99 -2.39 -0.01 1.42 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.03 0.93 6.21 -2.39 -0.01 0.92 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 1.49 7.70 -2.39 -0.02 1.48 16 33 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 34 H 0.08 2.44 7.32 -2.39 -0.02 2.43 16 35 H 0.04 1.92 6.05 -2.38 -0.01 1.91 16 36 H 0.03 1.24 5.99 -2.39 -0.01 1.23 16 37 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 38 H 0.17 6.34 6.03 -2.91 -0.02 6.33 16 39 H 0.20 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -53.30 325.39 6.05 -47.25 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.06 Total: 11.46 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 7.24 Total: 12.71 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -4.28 Total: -114.41 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal Total: -53.30 6.05 -47.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568782230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.667 kcal (2) G-P(sol) polarization free energy of solvation -53.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds