Wall clock time and date at job start Mon Mar 30 2020 20:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38624 * 120.44466 * 2 1 4 4 C 1.38575 * 118.39721 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.44717 * 180.02562 * 4 3 2 6 6 N 1.46896 * 109.47209 * 95.00120 * 5 4 3 7 7 C 1.46895 * 111.00108 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.47221 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.47002 * 304.99874 * 8 7 6 10 10 C 1.47194 * 109.47252 * 64.99992 * 8 7 6 11 11 N 7.51701 * 142.72733 * 57.02894 * 2 1 3 12 12 C 1.52997 * 109.47127 * 185.00300 * 8 7 6 13 13 C 1.50696 * 109.47268 * 174.99506 * 12 8 7 14 14 H 1.08004 * 119.99945 * 0.02562 * 13 12 8 15 15 C 1.37880 * 120.00438 * 179.97438 * 13 12 8 16 16 N 1.31513 * 120.00058 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99503 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.47220 * 89.99947 * 17 15 13 19 19 H 1.48504 * 109.46794 * 209.99564 * 17 15 13 20 20 H 1.48500 * 109.47508 * 329.99396 * 17 15 13 21 21 N 1.32354 * 119.10600 * 0.27208 * 4 3 2 22 22 C 1.31787 * 120.81650 * 359.44546 * 21 4 3 23 23 C 1.50692 * 119.12138 * 180.26659 * 22 21 4 24 24 N 1.31806 * 121.75493 * 0.56830 * 22 21 4 25 25 H 1.09003 * 109.46358 * 90.00352 * 1 2 3 26 26 H 1.08995 * 109.47326 * 209.99931 * 1 2 3 27 27 H 1.08993 * 109.47084 * 330.00587 * 1 2 3 28 28 H 1.07990 * 120.80343 * 359.94923 * 3 2 1 29 29 H 1.09001 * 109.47187 * 334.99670 * 5 4 3 30 30 H 1.09003 * 109.47043 * 214.99931 * 5 4 3 31 31 H 1.00910 * 111.00029 * 56.04403 * 6 5 4 32 32 H 1.08997 * 109.47158 * 59.99752 * 7 6 5 33 33 H 1.09004 * 109.47713 * 299.99926 * 7 6 5 34 34 H 1.08998 * 109.46934 * 294.99762 * 12 8 7 35 35 H 1.09006 * 109.47500 * 54.99635 * 12 8 7 36 36 H 0.97002 * 119.99549 * 180.02562 * 16 15 13 37 37 H 1.09010 * 109.47172 * 270.29369 * 23 22 21 38 38 H 1.09004 * 109.47488 * 30.29021 * 23 22 21 39 39 H 1.08997 * 109.47332 * 150.29512 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1951 0.0000 4 6 3.5943 1.1456 0.0005 5 6 4.4039 2.4167 0.0012 6 7 4.7682 2.7645 1.3810 7 6 5.5605 4.0009 1.4206 8 6 5.9207 4.3296 2.8709 9 1 5.0109 4.3770 3.4694 10 6 6.8061 3.2825 3.4060 11 7 7.4888 2.4775 3.8192 12 6 6.6375 5.6802 2.9248 13 6 6.8828 6.0618 4.3618 14 1 6.5601 5.4063 5.1572 15 6 7.5202 7.2472 4.6613 16 7 7.7347 7.5799 5.9154 17 14 8.0789 8.3805 3.2856 18 1 6.9903 9.3363 2.9586 19 1 9.2830 9.1322 3.7218 20 1 8.4076 7.5743 2.0826 21 7 4.1964 -0.0331 -0.0044 22 6 3.4956 -1.1492 0.0011 23 6 4.2206 -2.4703 0.0012 24 7 2.1776 -1.1407 0.0006 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 1.6900 2.1419 -0.0008 29 1 3.8137 3.2236 -0.4333 30 1 5.3094 2.2710 -0.5880 31 1 5.2609 2.0053 1.8273 32 1 4.9787 4.8189 0.9959 33 1 6.4740 3.8659 0.8415 34 1 7.5903 5.6070 2.4005 35 1 6.0179 6.4398 2.4479 36 1 8.1827 8.4140 6.1261 37 1 4.3958 -2.7887 -1.0265 38 1 5.1755 -2.3607 0.5154 39 1 3.6150 -3.2170 0.5147 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579623160.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:47 Heat of formation + Delta-G solvation = 57.075775 kcal Electronic energy + Delta-G solvation = -19716.903539 eV Core-core repulsion = 16659.083080 eV Total energy + Delta-G solvation = -3057.820459 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.33057 -37.71741 -35.81129 -34.66000 -34.06518 -33.11078 -31.58893 -29.47235 -28.75363 -27.61185 -25.51437 -22.73486 -22.50395 -21.82779 -21.28976 -17.91664 -17.02833 -16.86472 -16.24248 -15.75645 -15.64088 -15.04249 -14.85667 -14.11502 -13.87673 -13.68836 -13.47144 -13.23825 -13.09356 -12.82250 -12.55763 -12.50125 -12.49038 -12.32513 -12.20090 -11.95812 -11.43863 -11.19666 -11.03806 -10.88004 -10.62470 -10.45059 -9.98720 -9.82254 -9.50645 -9.41966 -9.33990 -8.63483 -8.55174 -6.12031 -4.12903 0.71953 0.83788 3.24429 3.33446 3.33964 3.40779 3.53209 3.57998 3.66178 3.76749 4.09667 4.34795 4.36751 4.67014 4.75482 4.81409 4.97508 5.09802 5.17550 5.22427 5.24587 5.27131 5.31115 5.36655 5.39360 5.55121 5.57486 5.72403 5.75462 5.93307 6.10396 6.25414 6.31742 6.81673 6.87180 6.90118 7.10531 7.20936 7.61726 7.94245 8.32434 8.40984 8.91543 9.47544 11.01116 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.028605 B = 0.003208 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.629902 B = 8724.765301 C = 9090.878628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.175 3.825 3 C -0.214 4.214 4 C 0.187 3.813 5 C 0.106 3.894 6 N -0.684 5.684 7 C 0.065 3.935 8 C 0.017 3.983 9 H 0.117 0.883 10 C 0.236 3.764 11 N -0.465 5.465 12 C -0.004 4.004 13 C -0.529 4.529 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.878 3.122 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.264 1.264 21 N -0.521 5.521 22 C 0.321 3.679 23 C -0.085 4.085 24 N -0.525 5.525 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.149 0.851 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.346 0.654 32 H 0.095 0.905 33 H 0.039 0.961 34 H 0.024 0.976 35 H 0.035 0.965 36 H 0.265 0.735 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.743 -12.795 -16.783 25.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.028 3.972 3 C -0.236 4.236 4 C 0.041 3.959 5 C -0.024 4.024 6 N -0.316 5.316 7 C -0.065 4.065 8 C -0.005 4.005 9 H 0.134 0.866 10 C -0.081 4.081 11 N -0.141 5.141 12 C -0.043 4.043 13 C -0.567 4.567 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.535 5.535 17 Si 0.705 3.295 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.189 1.189 21 N -0.237 5.237 22 C 0.054 3.946 23 C -0.143 4.143 24 N -0.241 5.241 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.167 0.833 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.164 0.836 32 H 0.113 0.887 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.747 -14.410 -15.918 24.970 hybrid contribution 0.550 1.593 -0.943 1.931 sum -12.197 -12.817 -16.861 24.441 Atomic orbital electron populations 1.20778 0.87760 1.04201 1.03547 1.21763 0.97599 0.88134 0.89655 1.22574 0.95532 1.00592 1.04924 1.21606 0.91633 0.93409 0.89235 1.20858 0.98246 0.91715 0.91583 1.60605 1.48884 1.07162 1.14967 1.22150 0.95994 0.92151 0.96174 1.19058 0.96397 0.91138 0.93885 0.86566 1.29032 0.93405 0.92847 0.92837 1.80952 1.10671 1.13241 1.09243 1.19627 0.95737 0.89632 0.99258 1.21028 1.39089 1.05981 0.90558 0.90790 1.24998 0.95089 0.97676 0.95383 1.69907 1.42212 1.23834 1.17523 0.86809 0.78667 0.81146 0.82873 1.19973 1.21335 1.18880 1.68086 1.41960 0.98443 1.15185 1.23199 0.86605 0.94619 0.90218 1.20559 1.00040 0.89971 1.03731 1.68086 1.09678 1.30564 1.15764 0.89787 0.89985 0.89892 0.83299 0.88514 0.92692 0.83569 0.88693 0.94241 0.95780 0.94638 0.92543 0.89752 0.89536 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.22 36.01 0.37 -0.32 16 2 C 0.17 1.79 6.82 -82.24 -0.56 1.23 16 3 C -0.21 -2.15 9.52 -39.31 -0.37 -2.53 16 4 C 0.19 2.20 6.34 -82.24 -0.52 1.68 16 5 C 0.11 1.12 6.04 -4.98 -0.03 1.09 16 6 N -0.68 -8.71 6.49 -115.06 -0.75 -9.46 16 7 C 0.07 0.86 5.12 -3.82 -0.02 0.84 16 8 C 0.02 0.30 2.42 -93.41 -0.23 0.07 16 9 H 0.12 1.98 8.14 -51.93 -0.42 1.55 16 10 C 0.24 4.76 12.97 -20.84 -0.27 4.49 16 11 N -0.46 -10.29 18.52 42.06 0.78 -9.51 16 12 C 0.00 -0.07 3.49 -27.89 -0.10 -0.17 16 13 C -0.53 -14.16 9.15 -34.44 -0.32 -14.48 16 14 H 0.07 2.19 7.84 -52.48 -0.41 1.77 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 17 Si 0.88 20.45 27.47 -169.99 -4.67 15.78 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 21 N -0.52 -6.83 10.27 -6.99 -0.07 -6.90 16 22 C 0.32 3.91 7.64 -157.19 -1.20 2.71 16 23 C -0.08 -0.75 10.32 36.00 0.37 -0.38 16 24 N -0.52 -6.28 10.27 -6.99 -0.07 -6.35 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 28 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 29 H 0.10 0.80 8.06 -51.93 -0.42 0.38 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.35 5.02 7.80 -39.29 -0.31 4.71 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.02 0.52 7.20 -51.93 -0.37 0.14 16 35 H 0.04 0.68 7.57 -51.93 -0.39 0.29 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 339.47 15.07 5.12 5.12 Total: -1.00 -33.01 339.47 -7.58 -40.59 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.72 Total: 0.87 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -2.97 Total: -3.89 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: 0.66 Total: -58.47 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.67 Total: 15.78 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.01 -7.58 -40.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579623160.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.666 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds