Wall clock time and date at job start Mon Mar 30 2020 20:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48490 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46716 * 300.00150 * 3 2 1 6 6 H 1.48500 * 109.46999 * 59.99848 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.39996 * 120.00142 * 180.02562 * 10 9 7 12 12 C 1.38858 * 120.00196 * 359.72416 * 11 10 9 13 13 C 1.38093 * 120.00127 * 179.71761 * 12 11 10 14 14 C 1.38854 * 119.99889 * 0.58258 * 13 12 11 15 15 N 1.40001 * 120.00364 * 179.71757 * 14 13 12 16 16 C 1.46499 * 119.99502 * 359.97438 * 15 14 13 17 17 C 1.52999 * 109.46926 * 179.97438 * 16 15 14 18 18 C 1.54267 * 110.03692 * 292.90614 * 17 16 15 19 19 C 1.54954 * 104.16526 * 217.13585 * 18 17 16 20 20 C 1.54891 * 102.77583 * 37.88714 * 19 18 17 21 21 C 1.53877 * 110.03418 * 175.68842 * 17 16 15 22 22 C 1.38857 * 119.99968 * 359.69700 * 14 13 12 23 23 C 1.38089 * 120.00299 * 0.02562 * 22 14 13 24 24 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 26 26 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 27 27 H 0.97001 * 119.99251 * 0.02562 * 10 9 7 28 28 H 1.08007 * 119.99729 * 0.02562 * 12 11 10 29 29 H 1.08000 * 119.99850 * 180.27419 * 13 12 11 30 30 H 0.97000 * 120.00245 * 179.97438 * 15 14 13 31 31 H 1.09002 * 109.47247 * 299.99186 * 16 15 14 32 32 H 1.08997 * 109.47562 * 60.00225 * 16 15 14 33 33 H 1.09002 * 110.01816 * 54.30214 * 17 16 15 34 34 H 1.09005 * 110.47906 * 335.78884 * 18 17 16 35 35 H 1.08997 * 110.48414 * 98.42181 * 18 17 16 36 36 H 1.08999 * 110.72393 * 279.57858 * 19 18 17 37 37 H 1.08996 * 110.92698 * 156.28933 * 19 18 17 38 38 H 1.09003 * 110.49075 * 203.40601 * 20 19 18 39 39 H 1.08998 * 110.60072 * 80.82099 * 20 19 18 40 40 H 1.09002 * 110.03451 * 238.56964 * 21 17 16 41 41 H 1.08998 * 110.03062 * 359.95046 * 21 17 16 42 42 H 1.08001 * 120.00345 * 180.02562 * 22 14 13 43 43 H 1.07999 * 120.00670 * 180.02562 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7364 -4.9326 0.0000 12 6 0.3712 -5.1864 0.0052 13 6 -0.0892 -6.4883 -0.0012 14 6 0.8131 -7.5437 -0.0007 15 7 0.3465 -8.8637 -0.0012 16 6 -1.0938 -9.1313 -0.0018 17 6 -1.3316 -10.6427 -0.0029 18 6 -0.8562 -11.2516 -1.3383 19 6 -1.8974 -12.3581 -1.6425 20 6 -3.2259 -11.7179 -1.1688 21 6 -2.8376 -10.9394 0.1052 22 6 2.1783 -7.2900 -0.0001 23 6 2.6387 -5.9881 0.0006 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 3.1567 -3.4354 0.0009 28 1 -0.3306 -4.3654 0.0093 29 1 -1.1510 -6.6856 -0.0016 30 1 0.9769 -9.6010 -0.0012 31 1 -1.5452 -8.6929 0.8883 32 1 -1.5447 -8.6923 -0.8917 33 1 -0.7995 -11.1048 0.8286 34 1 -0.8610 -10.4967 -2.1247 35 1 0.1387 -11.6827 -1.2281 36 1 -1.6788 -13.2608 -1.0721 37 1 -1.9330 -12.5764 -2.7098 38 1 -3.9595 -12.4897 -0.9355 39 1 -3.6162 -11.0388 -1.9268 40 1 -3.0362 -11.5463 0.9886 41 1 -3.3990 -10.0067 0.1594 42 1 2.8802 -8.1109 -0.0001 43 1 3.7005 -5.7907 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591773899.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:04:17 Heat of formation + Delta-G solvation = -12.732429 kcal Electronic energy + Delta-G solvation = -19994.371595 eV Core-core repulsion = 17037.064369 eV Total energy + Delta-G solvation = -2957.307226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.44254 -39.32674 -37.22533 -35.43016 -34.10281 -31.71170 -31.19809 -29.63085 -29.27533 -27.21656 -25.30360 -24.82035 -22.71378 -21.92597 -21.43897 -20.54340 -19.06193 -17.95103 -17.29653 -17.17441 -16.75360 -16.28631 -15.80005 -15.29699 -15.14707 -14.98627 -14.81545 -14.32652 -14.15574 -14.05278 -13.84577 -13.68512 -13.30892 -13.14815 -12.77588 -12.63420 -12.21522 -11.98295 -11.96467 -11.87492 -11.80082 -11.61958 -11.46304 -11.40439 -11.36427 -11.20297 -10.68284 -9.74137 -9.41338 -8.29678 -7.40138 -6.43339 0.62529 1.05584 1.40428 1.41210 1.54742 2.35153 2.70717 3.04648 3.08387 3.18753 3.70682 3.74238 3.83266 4.11512 4.22564 4.37631 4.48349 4.56330 4.60952 4.62960 4.71602 4.77774 4.81054 4.84776 4.92948 4.95319 5.07886 5.10273 5.12582 5.23879 5.27355 5.34144 5.36551 5.43813 5.49227 5.50912 5.53542 5.58843 5.72312 5.89539 6.00931 6.53040 6.62710 6.86171 7.11961 7.26368 7.37049 8.82703 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.038455 B = 0.002665 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.953412 B =10503.173456 C =11025.232659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.555 4.555 8 H 0.070 0.930 9 C 0.277 3.723 10 N -0.746 5.746 11 C 0.151 3.849 12 C -0.179 4.179 13 C -0.151 4.151 14 C 0.149 3.851 15 N -0.747 5.747 16 C 0.137 3.863 17 C -0.095 4.095 18 C -0.118 4.118 19 C -0.124 4.124 20 C -0.126 4.126 21 C -0.119 4.119 22 C -0.140 4.140 23 C -0.162 4.162 24 H 0.268 0.732 25 H -0.016 1.016 26 H -0.016 1.016 27 H 0.394 0.606 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.403 0.597 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.146 0.854 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.966 -25.247 -0.998 25.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.804 3.196 4 H -0.184 1.184 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.593 4.593 8 H 0.088 0.912 9 C 0.154 3.846 10 N -0.376 5.376 11 C 0.047 3.953 12 C -0.203 4.203 13 C -0.174 4.174 14 C 0.047 3.953 15 N -0.382 5.382 16 C 0.013 3.987 17 C -0.114 4.114 18 C -0.156 4.156 19 C -0.161 4.161 20 C -0.164 4.164 21 C -0.157 4.157 22 C -0.162 4.162 23 C -0.185 4.185 24 H 0.077 0.923 25 H 0.001 0.999 26 H 0.002 0.998 27 H 0.228 0.772 28 H 0.110 0.890 29 H 0.140 0.860 30 H 0.239 0.761 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.163 0.837 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.492 -24.975 -0.993 25.119 hybrid contribution 0.434 1.207 0.003 1.283 sum -2.058 -23.768 -0.990 23.878 Atomic orbital electron populations 1.70101 1.07903 1.28356 1.50400 1.25974 0.95855 1.03541 0.94033 0.85180 0.78852 0.77739 0.77878 1.18430 1.20185 1.20173 1.21647 0.93967 0.91375 1.52301 0.91151 1.18429 0.88737 0.84297 0.93147 1.44980 1.08403 1.02145 1.82072 1.18166 0.93261 0.85449 0.98397 1.20487 0.93969 0.96860 1.08963 1.20401 0.99011 0.90816 1.07175 1.17567 0.92302 0.85280 1.00195 1.44349 1.06179 1.02845 1.84807 1.21387 0.81570 0.95874 0.99890 1.21929 0.97231 0.93250 0.98943 1.22437 0.99189 0.97828 0.96151 1.22512 0.94510 0.97947 1.01176 1.22374 0.97687 0.99301 0.97000 1.22150 0.94215 1.00547 0.98824 1.20526 0.93530 0.96265 1.05909 1.20543 0.98736 0.91269 1.07990 0.92264 0.99851 0.99828 0.77214 0.88991 0.86049 0.76114 0.93569 0.93681 0.89962 0.92479 0.91033 0.90853 0.91417 0.90873 0.92119 0.90776 0.91853 0.83665 0.84987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.21 13.29 21.45 0.28 -55.92 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.98 43.84 29.54 68.60 2.03 45.87 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.55 -31.72 9.28 25.60 0.24 -31.48 16 8 H 0.07 3.80 7.60 -2.91 -0.02 3.78 16 9 C 0.28 15.48 4.67 85.63 0.40 15.88 16 10 N -0.75 -34.59 5.74 -342.91 -1.97 -36.56 16 11 C 0.15 6.30 6.66 38.14 0.25 6.55 16 12 C -0.18 -7.51 9.31 22.38 0.21 -7.30 16 13 C -0.15 -5.20 9.31 22.38 0.21 -4.99 16 14 C 0.15 4.32 6.66 38.13 0.25 4.58 16 15 N -0.75 -16.09 5.58 -339.23 -1.89 -17.98 16 16 C 0.14 2.65 3.97 86.38 0.34 3.00 16 17 C -0.09 -1.33 2.97 -10.07 -0.03 -1.36 16 18 C -0.12 -1.58 6.05 31.69 0.19 -1.39 16 19 C -0.12 -1.42 6.91 31.91 0.22 -1.20 16 20 C -0.13 -1.50 6.83 31.67 0.22 -1.29 16 21 C -0.12 -1.54 6.46 31.32 0.20 -1.33 16 22 C -0.14 -3.94 9.89 22.38 0.22 -3.72 16 23 C -0.16 -5.41 9.89 22.38 0.22 -5.19 16 24 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 25 H -0.02 -0.99 7.96 -2.39 -0.02 -1.01 16 26 H -0.02 -0.98 7.94 -2.38 -0.02 -1.00 16 27 H 0.39 16.71 8.34 -92.71 -0.77 15.94 16 28 H 0.09 4.32 6.73 -2.91 -0.02 4.30 16 29 H 0.12 3.78 6.73 -2.91 -0.02 3.76 16 30 H 0.40 6.90 8.35 -92.71 -0.77 6.13 16 31 H 0.05 0.97 7.95 -2.39 -0.02 0.95 16 32 H 0.04 0.97 7.83 -2.39 -0.02 0.95 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 0.93 7.77 -2.38 -0.02 0.91 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.06 0.88 7.67 -2.39 -0.02 0.87 16 42 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 43 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -65.21 346.04 1.51 -63.70 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: -0.55 Total: 29.36 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 3.61 Total: -28.47 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -3.58 Total: -110.46 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -65.21 1.51 -63.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591773899.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.970 kcal (2) G-P(sol) polarization free energy of solvation -65.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds