Wall clock time and date at job start Mon Mar 30 2020 20:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47138 * 235.46220 * 3 2 1 5 5 N 1.46501 * 109.46984 * 60.00316 * 4 3 2 6 6 C 1.35316 * 125.86780 * 124.99506 * 5 4 3 7 7 C 1.35355 * 106.17300 * 179.97438 * 6 5 4 8 8 C 1.50700 * 126.74735 * 179.97438 * 7 6 5 9 9 C 1.50693 * 109.47129 * 125.00374 * 8 7 6 10 10 H 1.08004 * 120.00292 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00326 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00312 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99773 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46972 * 90.00443 * 13 11 9 15 15 H 1.48500 * 109.47291 * 209.99906 * 13 11 9 16 16 H 1.48502 * 109.47451 * 330.00576 * 13 11 9 17 17 N 1.33768 * 106.49655 * 0.02562 * 7 6 5 18 18 N 1.28635 * 108.88723 * 359.97438 * 17 7 6 19 19 C 1.52993 * 109.47289 * 355.46727 * 3 2 1 20 20 C 1.52999 * 109.47351 * 60.00062 * 19 3 2 21 21 C 1.52994 * 109.47434 * 59.99725 * 20 19 3 22 22 C 1.53003 * 109.47313 * 300.00725 * 21 20 19 23 23 C 1.52991 * 109.47223 * 59.99316 * 22 21 20 24 24 H 1.08999 * 109.47457 * 300.00447 * 4 3 2 25 25 H 1.09001 * 109.47046 * 180.02562 * 4 3 2 26 26 H 1.07996 * 126.91291 * 0.25267 * 6 5 4 27 27 H 1.09010 * 109.46754 * 245.00016 * 8 7 6 28 28 H 1.09000 * 109.47256 * 4.99904 * 8 7 6 29 29 H 0.96993 * 120.00031 * 179.97438 * 12 11 9 30 30 H 1.09001 * 109.47139 * 179.97438 * 19 3 2 31 31 H 1.08998 * 109.47398 * 299.99522 * 19 3 2 32 32 H 1.09001 * 109.46782 * 299.99952 * 20 19 3 33 33 H 1.09001 * 109.47252 * 180.02562 * 20 19 3 34 34 H 1.08996 * 109.47700 * 180.02562 * 21 20 19 35 35 H 1.09001 * 109.46950 * 60.00331 * 21 20 19 36 36 H 1.09000 * 109.46330 * 299.99441 * 22 21 20 37 37 H 1.08998 * 109.47156 * 180.02562 * 22 21 20 38 38 H 1.08999 * 109.47124 * 180.02562 * 23 22 21 39 39 H 1.09000 * 109.47365 * 60.00759 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8187 1.1882 5 7 2.6296 0.2246 2.4353 6 6 3.3954 -0.1668 3.4800 7 6 2.5424 -0.6540 4.4111 8 6 2.9065 -1.2166 5.7609 9 6 2.1447 -0.4818 6.8335 10 1 1.4651 0.3134 6.5648 11 6 2.3151 -0.8246 8.1581 12 7 1.6499 -0.1837 9.0942 13 14 3.4900 -2.2005 8.6230 14 1 4.8452 -1.6379 8.8519 15 1 3.0123 -2.8611 9.8642 16 1 3.5468 -3.1960 7.5226 17 7 1.3128 -0.5388 3.8971 18 7 1.3987 -0.0146 2.7256 19 6 3.1186 -1.4370 0.1140 20 6 2.6091 -2.2550 -1.0743 21 6 3.1187 -1.6346 -2.3767 22 6 2.6081 -0.1968 -2.4907 23 6 3.1176 0.6211 -1.3024 24 1 2.7538 1.8430 1.1070 25 1 4.2076 0.8196 1.1880 26 1 4.4705 -0.0994 3.5572 27 1 2.6506 -2.2757 5.7942 28 1 3.9769 -1.0961 5.9281 29 1 1.7695 -0.4251 10.0259 30 1 4.2086 -1.4365 0.1135 31 1 2.7556 -1.8791 1.0418 32 1 1.5191 -2.2555 -1.0743 33 1 2.9725 -3.2794 -0.9929 34 1 2.7553 -2.2170 -3.2233 35 1 4.2087 -1.6341 -2.3767 36 1 1.5181 -0.1974 -2.4907 37 1 2.9708 0.2451 -3.4187 38 1 2.7535 1.6453 -1.3834 39 1 4.2076 0.6217 -1.3024 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594658371.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:04:46 Heat of formation + Delta-G solvation = 106.422914 kcal Electronic energy + Delta-G solvation = -20935.958414 eV Core-core repulsion = 17880.277808 eV Total energy + Delta-G solvation = -3055.680606 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.72893 -39.95297 -35.75755 -34.95062 -33.27847 -31.69655 -31.29950 -31.17207 -28.10953 -26.71792 -23.63767 -23.20147 -22.92148 -21.60792 -20.86414 -20.00109 -17.28910 -16.79905 -16.52741 -16.40687 -15.09964 -14.95263 -14.73282 -14.35798 -14.06264 -13.95458 -13.53959 -13.31984 -13.10904 -12.77112 -12.56873 -12.34486 -12.22629 -12.01134 -11.98356 -11.87276 -11.55016 -11.12214 -10.93595 -10.73656 -10.65362 -10.55419 -10.50783 -10.10459 -9.86492 -9.44264 -9.31941 -8.53710 -8.28693 -5.99144 -3.97360 2.07934 2.57807 2.83632 2.89888 3.31133 3.38151 3.40381 3.42476 3.57303 4.06984 4.25025 4.27288 4.46550 4.49624 4.70382 4.71221 4.80935 4.94898 5.01745 5.04752 5.13451 5.18012 5.32423 5.34297 5.44440 5.57456 5.66858 5.69721 5.70712 5.82785 5.88422 5.90848 5.99027 6.16477 6.84522 7.03822 7.07707 7.20675 7.66731 7.73484 8.58201 9.08959 9.22092 9.59667 11.14460 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.035343 B = 0.003976 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.037970 B = 7041.062846 C = 7310.334842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C 0.211 3.789 3 C 0.033 3.967 4 C 0.129 3.871 5 N -0.308 5.308 6 C -0.078 4.078 7 C 0.039 3.961 8 C 0.060 3.940 9 C -0.507 4.507 10 H 0.076 0.924 11 C 0.067 3.933 12 N -0.901 5.901 13 Si 0.877 3.123 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.264 1.264 17 N -0.251 5.251 18 N -0.100 5.100 19 C -0.110 4.110 20 C -0.123 4.123 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.105 4.105 24 H 0.102 0.898 25 H 0.121 0.879 26 H 0.184 0.816 27 H 0.037 0.963 28 H 0.031 0.969 29 H 0.263 0.737 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.465 -0.305 -24.922 27.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.079 5.079 2 C -0.108 4.108 3 C 0.029 3.971 4 C 0.006 3.994 5 N -0.103 5.103 6 C -0.226 4.226 7 C -0.098 4.098 8 C 0.021 3.979 9 C -0.546 4.546 10 H 0.094 0.906 11 C -0.134 4.134 12 N -0.540 5.540 13 Si 0.704 3.296 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.189 1.189 17 N -0.118 5.118 18 N -0.079 5.079 19 C -0.148 4.148 20 C -0.161 4.161 21 C -0.157 4.157 22 C -0.161 4.161 23 C -0.144 4.144 24 H 0.120 0.880 25 H 0.140 0.860 26 H 0.202 0.798 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.236 -0.202 -25.213 26.525 hybrid contribution 2.129 -0.554 0.827 2.350 sum 10.365 -0.755 -24.387 26.509 Atomic orbital electron populations 1.81165 1.12434 1.06809 1.07532 1.28253 0.94246 0.94507 0.93780 1.18582 0.83527 0.98604 0.96405 1.22045 1.01141 0.97389 0.78855 1.47128 1.06310 1.42888 1.14001 1.23329 0.99679 1.09762 0.89835 1.22520 0.88225 1.00755 0.98320 1.18145 0.96808 0.96583 0.86389 1.20921 1.25208 1.19135 0.89300 0.90629 1.24983 0.95800 0.96235 0.96344 1.69903 1.42050 1.41538 1.00461 0.86825 0.81371 0.83056 0.78338 1.20214 1.21253 1.18896 1.75143 1.22540 1.13878 1.00253 1.78302 0.99882 1.17377 1.12328 1.21661 1.01551 0.91588 1.00023 1.21567 1.01221 0.99293 0.93972 1.21559 1.00967 0.95659 0.97503 1.21573 1.01263 0.95554 0.97673 1.21604 1.01920 0.99602 0.91265 0.87988 0.86045 0.79844 0.94486 0.95087 0.92683 0.89534 0.90760 0.91942 0.91033 0.91711 0.91360 0.91858 0.90912 0.90396 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.79 18.54 42.15 0.78 -6.01 16 2 C 0.21 2.81 9.38 -20.76 -0.19 2.61 16 3 C 0.03 0.29 0.55 -157.30 -0.09 0.20 16 4 C 0.13 1.13 5.41 -4.04 -0.02 1.11 16 5 N -0.31 -4.63 2.67 -61.26 -0.16 -4.80 16 6 C -0.08 -1.25 11.49 -17.04 -0.20 -1.45 16 7 C 0.04 0.85 6.44 -82.78 -0.53 0.32 16 8 C 0.06 1.44 4.62 -29.04 -0.13 1.30 16 9 C -0.51 -14.86 9.64 -34.44 -0.33 -15.19 16 10 H 0.08 2.49 7.98 -52.48 -0.42 2.07 16 11 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 12 N -0.90 -28.24 13.96 55.43 0.77 -27.47 16 13 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 16 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 17 N -0.25 -5.99 12.40 33.29 0.41 -5.58 16 18 N -0.10 -2.02 11.18 60.35 0.67 -1.35 16 19 C -0.11 -0.93 4.55 -26.74 -0.12 -1.05 16 20 C -0.12 -0.99 5.70 -26.73 -0.15 -1.14 16 21 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 22 C -0.12 -0.72 5.70 -26.73 -0.15 -0.87 16 23 C -0.10 -0.54 4.71 -26.73 -0.13 -0.66 16 24 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.12 0.54 8.07 -51.93 -0.42 0.12 16 26 H 0.18 2.12 8.06 -52.49 -0.42 1.69 16 27 H 0.04 0.90 7.20 -51.92 -0.37 0.53 16 28 H 0.03 0.68 7.55 -51.93 -0.39 0.28 16 29 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.89 7.60 -51.93 -0.39 0.49 16 32 H 0.06 0.65 7.23 -51.93 -0.38 0.27 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.51 7.23 -51.93 -0.38 0.13 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 LS Contribution 320.92 15.07 4.84 4.84 Total: -1.00 -37.57 320.92 -5.38 -42.96 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: -5.72 Total: -5.39 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -2.31 Total: -13.78 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: 2.48 Total: -45.21 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -37.57 -5.38 -42.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594658371.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.379 kcal (2) G-P(sol) polarization free energy of solvation -37.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds