Wall clock time and date at job start Mon Mar 30 2020 20:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47138 * 235.46220 * 3 2 1 5 5 N 1.46501 * 109.46984 * 60.00316 * 4 3 2 6 6 C 1.35316 * 125.86780 * 124.99506 * 5 4 3 7 7 C 1.35355 * 106.17300 * 179.97438 * 6 5 4 8 8 C 1.50700 * 126.74735 * 179.97438 * 7 6 5 9 9 C 1.50693 * 109.47129 * 125.00374 * 8 7 6 10 10 H 1.08004 * 120.00292 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00326 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00312 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99773 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46972 * 90.00443 * 13 11 9 15 15 H 1.48500 * 109.47291 * 209.99906 * 13 11 9 16 16 H 1.48502 * 109.47451 * 330.00576 * 13 11 9 17 17 N 1.33768 * 106.49655 * 0.02562 * 7 6 5 18 18 N 1.28635 * 108.88723 * 359.97438 * 17 7 6 19 19 C 1.52993 * 109.47289 * 355.46727 * 3 2 1 20 20 C 1.52999 * 109.47351 * 60.00062 * 19 3 2 21 21 C 1.52994 * 109.47434 * 59.99725 * 20 19 3 22 22 C 1.53003 * 109.47313 * 300.00725 * 21 20 19 23 23 C 1.52991 * 109.47223 * 59.99316 * 22 21 20 24 24 H 1.08999 * 109.47457 * 300.00447 * 4 3 2 25 25 H 1.09001 * 109.47046 * 180.02562 * 4 3 2 26 26 H 1.07996 * 126.91291 * 0.25267 * 6 5 4 27 27 H 1.09010 * 109.46754 * 245.00016 * 8 7 6 28 28 H 1.09000 * 109.47256 * 4.99904 * 8 7 6 29 29 H 0.96993 * 120.00031 * 179.97438 * 12 11 9 30 30 H 1.09001 * 109.47139 * 179.97438 * 19 3 2 31 31 H 1.08998 * 109.47398 * 299.99522 * 19 3 2 32 32 H 1.09001 * 109.46782 * 299.99952 * 20 19 3 33 33 H 1.09001 * 109.47252 * 180.02562 * 20 19 3 34 34 H 1.08996 * 109.47700 * 180.02562 * 21 20 19 35 35 H 1.09001 * 109.46950 * 60.00331 * 21 20 19 36 36 H 1.09000 * 109.46330 * 299.99441 * 22 21 20 37 37 H 1.08998 * 109.47156 * 180.02562 * 22 21 20 38 38 H 1.08999 * 109.47124 * 180.02562 * 23 22 21 39 39 H 1.09000 * 109.47365 * 60.00759 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8187 1.1882 5 7 2.6296 0.2246 2.4353 6 6 3.3954 -0.1668 3.4800 7 6 2.5424 -0.6540 4.4111 8 6 2.9065 -1.2166 5.7609 9 6 2.1447 -0.4818 6.8335 10 1 1.4651 0.3134 6.5648 11 6 2.3151 -0.8246 8.1581 12 7 1.6499 -0.1837 9.0942 13 14 3.4900 -2.2005 8.6230 14 1 4.8452 -1.6379 8.8519 15 1 3.0123 -2.8611 9.8642 16 1 3.5468 -3.1960 7.5226 17 7 1.3128 -0.5388 3.8971 18 7 1.3987 -0.0146 2.7256 19 6 3.1186 -1.4370 0.1140 20 6 2.6091 -2.2550 -1.0743 21 6 3.1187 -1.6346 -2.3767 22 6 2.6081 -0.1968 -2.4907 23 6 3.1176 0.6211 -1.3024 24 1 2.7538 1.8430 1.1070 25 1 4.2076 0.8196 1.1880 26 1 4.4705 -0.0994 3.5572 27 1 2.6506 -2.2757 5.7942 28 1 3.9769 -1.0961 5.9281 29 1 1.7695 -0.4251 10.0259 30 1 4.2086 -1.4365 0.1135 31 1 2.7556 -1.8791 1.0418 32 1 1.5191 -2.2555 -1.0743 33 1 2.9725 -3.2794 -0.9929 34 1 2.7553 -2.2170 -3.2233 35 1 4.2087 -1.6341 -2.3767 36 1 1.5181 -0.1974 -2.4907 37 1 2.9708 0.2451 -3.4187 38 1 2.7535 1.6453 -1.3834 39 1 4.2076 0.6217 -1.3024 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594658371.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:04:45 Heat of formation + Delta-G solvation = 78.983822 kcal Electronic energy + Delta-G solvation = -20937.148263 eV Core-core repulsion = 17880.277808 eV Total energy + Delta-G solvation = -3056.870454 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.08898 -40.64856 -36.76289 -36.16610 -35.12163 -33.19496 -32.50720 -31.77673 -29.84015 -27.60233 -25.16741 -24.15363 -23.72022 -22.78575 -21.76519 -21.30473 -18.90222 -18.26472 -17.58141 -17.33049 -16.31327 -15.92194 -15.75570 -15.45196 -15.34988 -15.09439 -14.66070 -14.26718 -14.12735 -14.02601 -13.91510 -13.52766 -13.15624 -13.12632 -12.90000 -12.65880 -12.58656 -12.40304 -12.25369 -12.06219 -11.88436 -11.61046 -11.46823 -11.40386 -11.28463 -11.07746 -10.75991 -10.71127 -9.82568 -8.23474 -6.29090 0.79523 1.41502 1.47077 1.58152 1.59530 1.78632 1.83208 1.93457 2.42356 2.81459 3.10984 3.33333 3.58079 3.70602 3.77525 3.99891 4.15053 4.16700 4.30813 4.34669 4.40277 4.49434 4.50219 4.56299 4.69493 4.78818 4.88749 5.01226 5.09558 5.11518 5.19414 5.21965 5.34450 5.37768 5.38351 5.40680 5.51780 5.64809 5.89009 6.33516 6.68336 6.76809 7.32854 7.76542 8.94787 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.035343 B = 0.003976 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.037970 B = 7041.062846 C = 7310.334842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.231 3.769 3 C 0.033 3.967 4 C 0.112 3.888 5 N -0.287 5.287 6 C -0.032 4.032 7 C -0.015 4.015 8 C 0.068 3.932 9 C -0.519 4.519 10 H 0.012 0.988 11 C -0.002 4.002 12 N -0.959 5.959 13 Si 0.963 3.037 14 H -0.250 1.250 15 H -0.290 1.290 16 H -0.241 1.241 17 N -0.320 5.320 18 N -0.131 5.131 19 C -0.106 4.106 20 C -0.125 4.125 21 C -0.113 4.113 22 C -0.126 4.126 23 C -0.097 4.097 24 H 0.115 0.885 25 H 0.190 0.810 26 H 0.246 0.754 27 H 0.030 0.970 28 H 0.066 0.934 29 H 0.266 0.734 30 H 0.135 0.865 31 H 0.032 0.968 32 H 0.021 0.979 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.026 0.974 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.363 -0.550 -27.185 32.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.162 5.162 2 C -0.087 4.087 3 C 0.028 3.972 4 C -0.008 4.008 5 N -0.082 5.082 6 C -0.182 4.182 7 C -0.154 4.154 8 C 0.029 3.971 9 C -0.558 4.558 10 H 0.031 0.969 11 C -0.197 4.197 12 N -0.599 5.599 13 Si 0.784 3.216 14 H -0.175 1.175 15 H -0.217 1.217 16 H -0.165 1.165 17 N -0.186 5.186 18 N -0.109 5.109 19 C -0.145 4.145 20 C -0.163 4.163 21 C -0.150 4.150 22 C -0.164 4.164 23 C -0.136 4.136 24 H 0.133 0.867 25 H 0.207 0.793 26 H 0.262 0.738 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.153 0.847 31 H 0.051 0.949 32 H 0.040 0.960 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.045 0.955 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 14.113 -0.424 -27.547 30.955 hybrid contribution 0.240 -0.388 1.392 1.465 sum 14.353 -0.812 -26.155 29.845 Atomic orbital electron populations 1.81157 1.15276 1.09461 1.10271 1.29471 0.95661 0.92167 0.91401 1.19069 0.80023 0.99428 0.98649 1.22890 1.04972 0.97333 0.75652 1.47619 1.04805 1.40384 1.15438 1.23951 1.01352 1.05240 0.87672 1.22480 0.89210 1.04442 0.99243 1.17958 0.97652 0.95361 0.86152 1.21170 1.24803 1.18243 0.91558 0.96932 1.26151 0.98117 0.99559 0.95887 1.70106 1.44619 1.44117 1.01098 0.85488 0.78985 0.78969 0.78111 1.17461 1.21653 1.16460 1.75046 1.25007 1.16302 1.02219 1.78188 1.02593 1.18701 1.11434 1.21710 1.04136 0.90776 0.97845 1.21579 0.98782 1.00137 0.95768 1.21547 1.02680 0.95168 0.95610 1.21613 0.99204 0.96155 0.99388 1.21728 1.04648 0.99187 0.87999 0.86707 0.79320 0.73791 0.95230 0.91553 0.92499 0.84734 0.94871 0.96046 0.90594 0.92093 0.88138 0.95463 0.88619 0.89596 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -17.61 18.54 20.00 0.37 -17.24 16 2 C 0.23 6.26 9.38 89.44 0.84 7.10 16 3 C 0.03 0.45 0.55 -53.99 -0.03 0.42 16 4 C 0.11 1.38 5.41 86.38 0.47 1.85 16 5 N -0.29 -7.90 2.67 -347.73 -0.93 -8.83 16 6 C -0.03 -0.91 11.49 83.49 0.96 0.05 16 7 C -0.02 -0.66 6.44 41.60 0.27 -0.39 16 8 C 0.07 3.22 4.62 29.10 0.13 3.36 16 9 C -0.52 -31.67 9.64 25.60 0.25 -31.42 16 10 H 0.01 0.88 7.98 -2.91 -0.02 0.85 16 11 C 0.00 -0.09 5.47 84.66 0.46 0.37 16 12 N -0.96 -62.67 13.96 21.45 0.30 -62.37 16 13 Si 0.96 43.59 27.47 68.60 1.88 45.47 16 14 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 15 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 16 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 17 N -0.32 -16.03 12.40 -48.60 -0.60 -16.63 16 18 N -0.13 -5.41 11.18 37.02 0.41 -5.00 16 19 C -0.11 -1.44 4.55 30.59 0.14 -1.30 16 20 C -0.12 -1.83 5.70 30.59 0.17 -1.65 16 21 C -0.11 -0.92 5.92 30.59 0.18 -0.74 16 22 C -0.13 -1.08 5.70 30.59 0.17 -0.90 16 23 C -0.10 -0.49 4.71 30.59 0.14 -0.34 16 24 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.19 -0.09 8.07 -2.39 -0.02 -0.10 16 26 H 0.25 3.72 8.06 -2.91 -0.02 3.69 16 27 H 0.03 1.43 7.20 -2.38 -0.02 1.41 16 28 H 0.07 2.66 7.55 -2.39 -0.02 2.64 16 29 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 30 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.03 0.74 7.60 -2.39 -0.02 0.72 16 32 H 0.02 0.47 7.23 -2.39 -0.02 0.45 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.03 0.43 7.23 -2.39 -0.02 0.41 16 37 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.14 -0.53 8.14 -2.39 -0.02 -0.55 16 Total: -1.00 -97.01 320.92 6.58 -90.43 By element: Atomic # 1 Polarization: -3.22 SS G_CDS: 0.98 Total: -2.24 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 4.16 Total: -23.59 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -0.45 Total: -110.07 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.47 kcal Total: -97.01 6.58 -90.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594658371.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.417 kcal (2) G-P(sol) polarization free energy of solvation -97.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds