Wall clock time and date at job start Mon Mar 30 2020 20:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38612 * 120.44498 * 2 1 4 4 C 1.38580 * 118.39674 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.44689 * 180.02562 * 4 3 2 6 6 N 1.46891 * 109.47456 * 94.85411 * 5 4 3 7 7 C 1.46905 * 111.00310 * 164.43195 * 6 5 4 8 8 C 1.50702 * 109.47020 * 190.00094 * 7 6 5 9 9 H 1.07996 * 120.00218 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99576 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00112 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 120.00124 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.46986 * 90.00256 * 12 10 8 14 14 H 1.48505 * 109.47054 * 210.00322 * 12 10 8 15 15 H 1.48495 * 109.47292 * 329.99952 * 12 10 8 16 16 C 1.46900 * 111.00335 * 288.38873 * 6 5 4 17 17 C 1.52999 * 109.46941 * 295.42153 * 16 6 5 18 18 C 1.47202 * 109.47205 * 176.99190 * 17 16 6 19 19 N 6.01308 * 84.45887 * 27.43347 * 2 1 3 20 20 N 1.32346 * 119.10363 * 0.26897 * 4 3 2 21 21 C 1.31783 * 120.82184 * 359.45163 * 20 4 3 22 22 C 1.50696 * 119.12536 * 180.31078 * 21 20 4 23 23 N 1.31813 * 121.74984 * 0.56231 * 21 20 4 24 24 H 1.09001 * 109.47535 * 90.00358 * 1 2 3 25 25 H 1.09010 * 109.47118 * 210.00220 * 1 2 3 26 26 H 1.09001 * 109.47113 * 329.99972 * 1 2 3 27 27 H 1.08001 * 120.80346 * 359.95635 * 3 2 1 28 28 H 1.09000 * 109.47174 * 214.85458 * 5 4 3 29 29 H 1.09001 * 109.47226 * 334.85373 * 5 4 3 30 30 H 1.08996 * 109.46861 * 310.00010 * 7 6 5 31 31 H 1.09000 * 109.46751 * 69.99906 * 7 6 5 32 32 H 0.96996 * 120.00469 * 180.02562 * 11 10 8 33 33 H 1.09008 * 109.47105 * 55.41957 * 16 6 5 34 34 H 1.08994 * 109.47673 * 175.42007 * 16 6 5 35 35 H 1.09000 * 109.47070 * 296.99184 * 17 16 6 36 36 H 1.09000 * 109.47214 * 56.99558 * 17 16 6 37 37 H 1.08997 * 109.46796 * 270.24968 * 22 21 20 38 38 H 1.09001 * 109.46920 * 30.24676 * 22 21 20 39 39 H 1.08998 * 109.47478 * 150.24932 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1950 0.0000 4 6 3.5943 1.1455 0.0005 5 6 4.4039 2.4165 0.0012 6 7 4.7653 2.7663 1.3813 7 6 5.8421 3.7653 1.4065 8 6 6.3530 3.9176 2.8161 9 1 5.9214 3.3307 3.6133 10 6 7.3716 4.8063 3.0878 11 7 7.8179 4.9389 4.3178 12 14 8.1186 5.8209 1.7087 13 1 7.3742 7.0989 1.5754 14 1 9.5421 6.1073 2.0201 15 1 8.0334 5.0632 0.4345 16 6 3.5922 3.2377 2.1294 17 6 3.0835 4.5416 1.5114 18 6 1.8658 4.9759 2.2153 19 7 0.9264 5.3119 2.7574 20 7 4.1963 -0.0331 -0.0044 21 6 3.4956 -1.1492 0.0011 22 6 4.2205 -2.4704 0.0023 23 7 2.1775 -1.1407 0.0006 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6899 2.1419 -0.0007 28 1 5.3106 2.2701 -0.5858 29 1 3.8147 3.2229 -0.4356 30 1 6.6555 3.4392 0.7585 31 1 5.4579 4.7225 1.0539 32 1 8.5342 5.5643 4.5091 33 1 2.8062 2.4837 2.0853 34 1 3.8701 3.4124 3.1687 35 1 3.8503 5.3107 1.6034 36 1 2.8558 4.3797 0.4578 37 1 4.3957 -2.7896 -1.0251 38 1 5.1754 -2.3604 0.5164 39 1 3.6149 -3.2167 0.5163 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595394059.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:04:51 Heat of formation + Delta-G solvation = 55.255534 kcal Electronic energy + Delta-G solvation = -20754.413011 eV Core-core repulsion = 17696.513621 eV Total energy + Delta-G solvation = -3057.899390 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.09472 -39.45112 -37.41527 -35.48134 -34.93409 -34.25487 -31.96339 -30.34433 -30.02215 -28.82626 -27.15297 -25.13034 -23.21152 -22.76364 -21.20072 -19.04610 -18.74600 -18.45626 -16.98203 -16.69716 -16.41406 -16.22787 -15.81779 -15.65522 -15.40731 -14.96042 -14.44402 -14.25085 -14.19874 -13.99204 -13.66946 -13.47031 -13.33550 -13.24685 -13.10571 -13.02011 -12.91859 -12.71735 -12.48930 -12.18518 -11.76533 -11.71267 -11.61578 -11.43032 -11.23079 -10.68917 -10.20733 -10.12168 -9.00318 -8.18450 -6.21947 -0.01869 0.15307 1.43692 1.47798 1.56696 1.76302 1.80889 2.43493 2.66365 2.97765 3.04507 3.12049 3.17365 3.39883 3.59203 4.04572 4.09268 4.12288 4.14969 4.32141 4.44740 4.50070 4.57334 4.68688 4.70578 4.73302 4.76870 4.79710 4.98256 5.05171 5.08864 5.14164 5.17694 5.25185 5.59783 5.63542 5.99039 6.18321 6.31349 6.60012 6.65939 6.86351 7.24810 7.41542 8.98390 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.016151 B = 0.005487 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.175519 B = 5101.940158 C = 6296.874593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.165 3.835 3 C -0.230 4.230 4 C 0.187 3.813 5 C 0.091 3.909 6 N -0.530 5.530 7 C 0.167 3.833 8 C -0.510 4.510 9 H 0.033 0.967 10 C 0.007 3.993 11 N -0.954 5.954 12 Si 0.942 3.058 13 H -0.262 1.262 14 H -0.295 1.295 15 H -0.237 1.237 16 C 0.074 3.926 17 C -0.063 4.063 18 C 0.243 3.757 19 N -0.492 5.492 20 N -0.535 5.535 21 C 0.302 3.698 22 C -0.081 4.081 23 N -0.544 5.544 24 H 0.101 0.899 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.171 0.829 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.034 0.966 31 H 0.022 0.978 32 H 0.263 0.737 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.117 0.883 36 H 0.144 0.856 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.810 -7.622 -15.316 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.019 3.981 3 C -0.252 4.252 4 C 0.040 3.960 5 C -0.037 4.037 6 N -0.252 5.252 7 C 0.041 3.959 8 C -0.548 4.548 9 H 0.051 0.949 10 C -0.190 4.190 11 N -0.595 5.595 12 Si 0.765 3.235 13 H -0.186 1.186 14 H -0.222 1.222 15 H -0.160 1.160 16 C -0.056 4.056 17 C -0.105 4.105 18 C -0.074 4.074 19 N -0.170 5.170 20 N -0.252 5.252 21 C 0.035 3.965 22 C -0.139 4.139 23 N -0.261 5.261 24 H 0.119 0.881 25 H 0.099 0.901 26 H 0.114 0.886 27 H 0.188 0.812 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.052 0.948 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.135 0.865 36 H 0.162 0.838 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.418 -8.330 -14.192 20.616 hybrid contribution 0.556 1.807 -0.178 1.899 sum -11.862 -6.523 -14.370 19.743 Atomic orbital electron populations 1.20861 0.85508 1.04724 1.04771 1.22301 0.99061 0.87894 0.88838 1.22842 0.95026 1.01618 1.05731 1.21831 0.91886 0.93669 0.88581 1.21197 0.99878 0.91617 0.91014 1.61889 1.07764 1.43453 1.12107 1.20114 0.90099 0.89938 0.95768 1.21237 1.18121 1.21489 0.93950 0.94861 1.25838 0.97005 0.98368 0.97793 1.70070 1.29350 1.38355 1.21770 0.85798 0.77428 0.79690 0.80556 1.18648 1.22177 1.16041 1.21960 0.91941 0.93009 0.98699 1.20210 0.88609 1.00848 1.00811 1.29291 0.93772 0.91812 0.92512 1.81170 1.14014 1.10879 1.10959 1.68117 1.42618 0.99091 1.15332 1.23788 0.87014 0.95552 0.90118 1.20612 0.99727 0.88901 1.04667 1.68150 1.09771 1.31365 1.16775 0.88051 0.90144 0.88639 0.81154 0.89033 0.88821 0.94758 0.96040 0.92779 0.90471 0.92148 0.86486 0.83826 0.88280 0.89845 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 10.22 71.24 0.73 -0.71 16 2 C 0.17 3.68 6.82 42.58 0.29 3.97 16 3 C -0.23 -4.98 8.20 22.44 0.18 -4.80 16 4 C 0.19 5.04 5.85 42.56 0.25 5.29 16 5 C 0.09 2.34 5.21 85.56 0.45 2.79 16 6 N -0.53 -18.03 4.65 -905.38 -4.21 -22.24 16 7 C 0.17 6.61 3.53 85.56 0.30 6.92 16 8 C -0.51 -26.75 9.08 25.60 0.23 -26.51 16 9 H 0.03 2.02 7.35 -2.91 -0.02 1.99 16 10 C 0.01 0.36 5.47 84.65 0.46 0.83 16 11 N -0.95 -57.82 13.96 21.45 0.30 -57.52 16 12 Si 0.94 40.08 27.47 68.60 1.88 41.97 16 13 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 14 H -0.30 -12.99 7.11 99.48 0.71 -12.28 16 15 H -0.24 -8.98 6.54 99.48 0.65 -8.32 16 16 C 0.07 2.25 4.92 86.30 0.42 2.68 16 17 C -0.06 -1.47 5.03 28.79 0.14 -1.33 16 18 C 0.24 6.66 15.43 89.45 1.38 8.04 16 19 N -0.49 -15.99 18.53 20.00 0.37 -15.61 16 20 N -0.54 -16.60 10.27 -176.03 -1.81 -18.41 16 21 C 0.30 8.43 7.64 138.75 1.06 9.49 16 22 C -0.08 -1.68 10.32 71.23 0.74 -0.94 16 23 N -0.54 -14.42 10.27 -176.02 -1.81 -16.23 16 24 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.09 1.06 8.10 -2.39 -0.02 1.04 16 27 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 28 H 0.09 2.46 7.82 -2.39 -0.02 2.45 16 29 H 0.09 1.65 5.84 -2.39 -0.01 1.63 16 30 H 0.03 1.39 6.92 -2.39 -0.02 1.37 16 31 H 0.02 0.76 5.47 -2.39 -0.01 0.74 16 32 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 33 H 0.08 2.13 6.36 -2.38 -0.02 2.12 16 34 H 0.06 2.33 6.87 -2.39 -0.02 2.32 16 35 H 0.12 2.99 6.43 -2.39 -0.02 2.97 16 36 H 0.14 2.10 6.16 -2.39 -0.01 2.08 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -72.31 328.04 2.38 -69.93 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 1.01 Total: 12.41 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 6.64 Total: 5.70 kcal Atomic # 7 Polarization: -122.85 SS G_CDS: -7.16 Total: -130.01 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 1.88 Total: 41.97 kcal Total: -72.31 2.38 -69.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595394059.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.188 kcal (2) G-P(sol) polarization free energy of solvation -72.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds