Wall clock time and date at job start Mon Mar 30 2020 20:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.49211 * 2 1 4 4 C 1.53056 * 109.50635 * 120.05696 * 2 1 3 5 5 N 1.46956 * 109.36524 * 178.38234 * 4 2 1 6 6 C 1.46898 * 111.00097 * 176.81298 * 5 4 2 7 7 C 1.50700 * 109.46953 * 189.84104 * 6 5 4 8 8 H 1.07998 * 120.00123 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99931 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00202 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99779 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47037 * 89.99466 * 11 9 7 13 13 H 1.48503 * 109.46718 * 209.99291 * 11 9 7 14 14 H 1.48496 * 109.47117 * 329.99542 * 11 9 7 15 15 C 1.46963 * 110.87582 * 300.67412 * 5 4 2 16 16 C 1.53056 * 109.36215 * 59.32405 * 15 5 4 17 17 N 1.46953 * 109.36571 * 301.59782 * 16 15 5 18 18 C 1.46899 * 111.00236 * 183.19295 * 17 16 15 19 19 C 1.50701 * 109.46888 * 293.95246 * 18 17 16 20 20 C 1.38233 * 119.99666 * 269.72838 * 19 18 17 21 21 C 1.38240 * 119.99785 * 179.78662 * 20 19 18 22 22 C 1.38230 * 119.99889 * 0.46421 * 21 20 19 23 23 C 1.38236 * 120.00076 * 359.76490 * 22 21 20 24 24 C 1.38232 * 120.00010 * 89.99501 * 19 18 17 25 25 H 1.09002 * 109.47361 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47346 * 300.04330 * 1 2 3 27 27 H 1.09000 * 109.47146 * 60.04464 * 1 2 3 28 28 H 1.09004 * 109.48435 * 298.34663 * 4 2 1 29 29 H 1.08997 * 109.49056 * 58.40802 * 4 2 1 30 30 H 1.09000 * 109.46858 * 309.83707 * 6 5 4 31 31 H 1.08995 * 109.47574 * 69.84179 * 6 5 4 32 32 H 0.96999 * 119.99683 * 180.02562 * 10 9 7 33 33 H 1.08994 * 109.49116 * 299.35412 * 15 5 4 34 34 H 1.08998 * 109.48714 * 179.28634 * 15 5 4 35 35 H 1.08997 * 109.49056 * 61.56647 * 16 15 5 36 36 H 1.09004 * 109.48437 * 181.60556 * 16 15 5 37 37 H 1.09002 * 109.47046 * 53.94931 * 18 17 16 38 38 H 1.08993 * 109.47001 * 173.95274 * 18 17 16 39 39 H 1.07994 * 120.00271 * 359.97438 * 20 19 18 40 40 H 1.08000 * 120.00207 * 180.24777 * 21 20 19 41 41 H 1.07999 * 120.00273 * 179.78840 * 22 21 20 42 42 H 1.08001 * 120.00319 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.00163 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0411 -0.7226 1.2487 5 7 3.5101 -0.7548 1.2261 6 6 4.0419 -1.3746 2.4471 7 6 5.5346 -1.1751 2.5026 8 1 6.0378 -0.6408 1.7103 9 6 6.2578 -1.6737 3.5653 10 7 7.5606 -1.5000 3.6135 11 14 5.3873 -2.5972 4.9361 12 1 5.3436 -4.0447 4.6076 13 1 6.1238 -2.4007 6.2106 14 1 4.0027 -2.0802 5.0797 15 6 4.0004 -1.4484 0.0269 16 6 3.4893 -0.7258 -1.2219 17 7 2.0203 -0.6935 -1.1992 18 6 1.4884 -0.0738 -2.4203 19 6 1.8785 1.3814 -2.4558 20 6 1.0481 2.3334 -1.8945 21 6 1.4080 3.6678 -1.9232 22 6 2.5935 4.0512 -2.5217 23 6 3.4216 3.0997 -3.0872 24 6 3.0639 1.7648 -3.0546 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5145 0.8895 27 1 -0.3633 0.5131 -0.8904 28 1 1.7025 -0.1931 2.1393 29 1 1.6551 -1.7419 1.2626 30 1 3.5809 -0.9121 3.3198 31 1 3.8180 -2.4413 2.4403 32 1 8.0693 -1.8511 4.3611 33 1 3.6367 -2.4759 0.0269 34 1 5.0903 -1.4481 0.0266 35 1 3.8752 0.2934 -1.2358 36 1 3.8281 -1.2551 -2.1125 37 1 1.8984 -0.5812 -3.2935 38 1 0.4018 -0.1590 -2.4273 39 1 0.1197 2.0344 -1.4308 40 1 0.7612 4.4112 -1.4811 41 1 2.8731 5.0941 -2.5471 42 1 4.3481 3.3992 -3.5544 43 1 3.7108 1.0215 -3.4966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307742607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:07 Heat of formation + Delta-G solvation = 42.499805 kcal Electronic energy + Delta-G solvation = -21781.536138 eV Core-core repulsion = 18826.623961 eV Total energy + Delta-G solvation = -2954.912177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.13683 -38.27476 -35.45092 -32.66472 -32.30342 -31.22024 -30.75979 -28.56232 -27.19992 -25.76742 -23.55515 -22.78932 -22.11306 -21.40414 -20.24096 -19.05736 -16.89456 -16.66435 -15.74079 -15.60859 -15.22381 -14.82248 -14.48748 -14.40984 -14.07816 -13.57094 -13.53988 -13.35532 -12.66935 -12.56594 -12.31046 -12.07977 -11.95503 -11.87594 -11.66173 -11.34978 -11.15003 -10.90311 -10.86721 -10.63176 -10.61692 -10.37382 -9.88207 -9.74553 -9.23030 -8.89156 -8.74689 -8.55833 -8.12346 -7.33028 -6.03704 -4.00747 1.32911 1.39642 3.29705 3.37119 3.39747 3.74460 4.16738 4.43705 4.72102 4.78658 4.84175 4.97316 5.04222 5.17181 5.20620 5.27799 5.38916 5.46882 5.52281 5.59042 5.71613 5.77086 5.85457 5.87114 5.95204 5.96642 6.00539 6.06491 6.14355 6.19891 6.42560 6.46070 6.50107 6.57104 6.59401 6.68131 6.87652 6.98800 6.99372 7.24484 7.31867 7.63061 7.94952 8.08994 8.68378 9.04493 9.58368 11.09448 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.023111 B = 0.004733 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.254533 B = 5914.816001 C = 6352.918822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.081 3.919 3 H 0.056 0.944 4 C 0.060 3.940 5 N -0.529 5.529 6 C 0.163 3.837 7 C -0.508 4.508 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.901 5.901 11 Si 0.876 3.124 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.267 1.267 15 C 0.067 3.933 16 C 0.053 3.947 17 N -0.523 5.523 18 C 0.088 3.912 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.107 4.107 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.030 0.970 30 H 0.027 0.973 31 H -0.016 1.016 32 H 0.263 0.737 33 H 0.028 0.972 34 H 0.091 0.909 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.398 6.481 -13.260 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 H 0.073 0.927 4 C -0.069 4.069 5 N -0.253 5.253 6 C 0.037 3.963 7 C -0.546 4.546 8 H 0.098 0.902 9 C -0.133 4.133 10 N -0.540 5.540 11 Si 0.703 3.297 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.192 1.192 15 C -0.062 4.062 16 C -0.075 4.075 17 N -0.246 5.246 18 C -0.039 4.039 19 C -0.117 4.117 20 C -0.132 4.132 21 C -0.140 4.140 22 C -0.141 4.141 23 C -0.138 4.138 24 C -0.126 4.126 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.002 0.998 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.226 6.398 -13.116 20.379 hybrid contribution -0.217 -0.434 0.903 1.025 sum -14.443 5.964 -12.213 19.832 Atomic orbital electron populations 1.21994 0.94982 1.02323 1.01449 1.21699 0.94228 0.96958 0.89901 0.92653 1.22141 0.90042 0.98449 0.96243 1.62096 1.05202 1.54533 1.03448 1.20156 0.96879 0.91660 0.87640 1.21032 0.89586 1.35661 1.08332 0.90213 1.24895 0.94709 0.95888 0.97817 1.69897 1.05850 1.46549 1.31723 0.86856 0.80202 0.80545 0.82103 1.20340 1.21180 1.19227 1.22034 1.01148 0.94502 0.88485 1.22306 0.86406 1.00255 0.98499 1.62618 1.09445 1.51330 1.01191 1.21298 1.00802 0.87964 0.93882 1.20680 0.95371 0.97317 0.98355 1.21231 0.99783 0.92849 0.99339 1.21126 0.97109 0.96083 0.99710 1.21126 0.94914 0.99380 0.98643 1.21144 0.99473 0.93257 0.99908 1.21083 0.96225 0.96041 0.99214 0.91980 0.92230 0.92344 0.91220 0.95200 0.95463 0.99831 0.92702 0.95376 0.89075 0.93504 0.91133 0.90221 0.89870 0.85852 0.86344 0.86383 0.86225 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.38 37.16 0.31 -1.43 16 2 C 0.08 1.21 1.94 -67.65 -0.13 1.08 16 3 H 0.06 0.92 6.29 -51.93 -0.33 0.60 16 4 C 0.06 1.09 4.89 -3.76 -0.02 1.07 16 5 N -0.53 -11.46 4.70 -235.90 -1.11 -12.57 16 6 C 0.16 4.06 3.79 -4.98 -0.02 4.04 16 7 C -0.51 -14.61 9.02 -34.44 -0.31 -14.92 16 8 H 0.08 2.49 7.37 -52.49 -0.39 2.11 16 9 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 10 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 11 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 15 C 0.07 1.33 5.43 -3.76 -0.02 1.31 16 16 C 0.05 0.86 5.06 -3.77 -0.02 0.84 16 17 N -0.52 -7.57 4.73 -227.93 -1.08 -8.65 16 18 C 0.09 1.03 5.17 -4.98 -0.03 1.01 16 19 C -0.12 -1.40 4.01 -104.63 -0.42 -1.82 16 20 C -0.11 -1.32 7.84 -39.58 -0.31 -1.63 16 21 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 22 C -0.12 -1.36 10.05 -39.59 -0.40 -1.76 16 23 C -0.12 -1.39 10.05 -39.58 -0.40 -1.78 16 24 C -0.11 -1.30 8.05 -39.58 -0.32 -1.62 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.59 4.07 -51.93 -0.21 0.38 16 28 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.03 0.69 7.09 -51.93 -0.37 0.32 16 31 H -0.02 -0.40 7.55 -51.93 -0.39 -0.79 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 2.00 6.78 -51.93 -0.35 1.65 16 35 H 0.05 0.81 6.38 -51.93 -0.33 0.48 16 36 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 37 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 38 H 0.08 0.87 6.32 -51.93 -0.33 0.54 16 39 H 0.12 1.27 5.41 -52.49 -0.28 0.98 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 43 H 0.12 1.33 8.03 -52.49 -0.42 0.91 16 LS Contribution 325.37 15.07 4.90 4.90 Total: -1.00 -31.19 325.37 -10.54 -41.73 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.79 Total: -0.02 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -2.57 Total: -15.48 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -1.41 Total: -48.24 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.19 -10.54 -41.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307742607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.225 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds