Wall clock time and date at job start Mon Mar 30 2020 20:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00148 * 2 1 4 4 H 1.48495 * 109.46908 * 269.99927 * 3 2 1 5 5 H 1.48492 * 109.47261 * 30.00049 * 3 2 1 6 6 H 1.48497 * 109.46941 * 150.00105 * 3 2 1 7 7 C 1.37878 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00262 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99792 * 0.02562 * 7 2 1 10 10 S 1.81397 * 109.46864 * 179.97438 * 9 7 2 11 11 O 1.42107 * 108.57920 * 65.50890 * 10 9 7 12 12 O 1.42098 * 108.58111 * 294.48214 * 10 9 7 13 13 C 1.81403 * 101.91995 * 179.97438 * 10 9 7 14 14 C 1.50705 * 109.46845 * 179.97438 * 13 10 9 15 15 C 1.38705 * 120.40098 * 90.00542 * 14 13 10 16 16 C 1.38565 * 118.43594 * 180.02562 * 15 14 13 17 17 C 1.38398 * 119.14885 * 359.97438 * 16 15 14 18 18 Cl 1.73605 * 119.63252 * 180.02562 * 17 16 15 19 19 N 1.31943 * 120.73083 * 359.97438 * 17 16 15 20 20 C 1.31905 * 121.70686 * 0.04743 * 19 17 16 21 21 H 0.97003 * 119.99587 * 0.02562 * 1 2 3 22 22 H 1.08992 * 109.47081 * 59.99380 * 9 7 2 23 23 H 1.08998 * 109.46481 * 299.99393 * 9 7 2 24 24 H 1.09003 * 109.46428 * 60.00416 * 13 10 9 25 25 H 1.08993 * 109.47383 * 299.99684 * 13 10 9 26 26 H 1.08001 * 120.78816 * 359.97438 * 15 14 13 27 27 H 1.08000 * 120.42478 * 179.72686 * 16 15 14 28 28 H 1.08007 * 119.60917 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 16 2.4296 -3.8780 0.0005 11 8 3.1483 -3.8592 1.2263 12 8 3.1481 -3.8594 -1.2253 13 6 1.3240 -5.3161 0.0013 14 6 2.1444 -6.5803 0.0008 15 6 2.5272 -7.1692 1.1969 16 6 3.2814 -8.3306 1.1489 17 6 3.6248 -8.8609 -0.0825 18 17 4.5689 -10.3159 -0.1573 19 7 3.2418 -8.2735 -1.2001 20 6 2.5237 -7.1671 -1.1909 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8896 23 1 0.6240 -2.5566 0.8904 24 1 0.6950 -5.2912 -0.8885 25 1 0.6956 -5.2908 0.8915 26 1 2.2448 -6.7324 2.1434 27 1 3.6006 -8.8135 2.0606 28 1 2.2289 -6.7145 -2.1262 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905265322.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:48 Heat of formation + Delta-G solvation = -51.266524 kcal Electronic energy + Delta-G solvation = -16386.364244 eV Core-core repulsion = 13362.488130 eV Total energy + Delta-G solvation = -3023.876114 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.45101 -36.87102 -36.16170 -35.21662 -33.82401 -33.41978 -32.18667 -29.20930 -27.67360 -24.00664 -23.70022 -22.39751 -18.22357 -17.60881 -17.02884 -17.00325 -16.06146 -15.71153 -15.20442 -15.00780 -14.48681 -14.32418 -13.93747 -13.43041 -12.89662 -12.57631 -12.24155 -12.18795 -11.94416 -11.49557 -11.47226 -11.28025 -11.21555 -10.95402 -10.83790 -10.63164 -10.04085 -9.89147 -9.81295 -9.33588 -8.80567 -8.77143 -6.39937 -4.49860 0.40566 0.91726 1.05976 1.61035 3.18546 3.24147 3.30290 3.42457 3.62760 4.05224 4.21376 4.30409 4.40569 4.65774 4.70942 4.76900 4.89466 5.00925 5.27661 5.45482 5.51903 5.68498 5.91694 6.25880 6.52937 6.58616 7.40648 7.49340 7.67269 8.52066 9.17910 10.71721 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.054372 B = 0.003894 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.847220 B = 7188.353908 C = 7244.745544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.073 0.927 9 C -0.398 4.398 10 S 2.387 3.613 11 O -0.950 6.950 12 O -0.948 6.948 13 C -0.589 4.589 14 C -0.123 4.123 15 C -0.051 4.051 16 C -0.151 4.151 17 C 0.171 3.829 18 Cl -0.034 7.034 19 N -0.474 5.474 20 C 0.133 3.867 21 H 0.269 0.731 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.143 0.857 25 H 0.142 0.858 26 H 0.155 0.845 27 H 0.150 0.850 28 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.989 -15.049 1.951 15.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.570 4.570 8 H 0.091 0.909 9 C -0.533 4.533 10 S 2.572 3.428 11 O -0.947 6.947 12 O -0.946 6.946 13 C -0.712 4.712 14 C -0.126 4.126 15 C -0.077 4.077 16 C -0.172 4.172 17 C 0.006 3.994 18 Cl -0.006 7.006 19 N -0.184 5.184 20 C -0.025 4.025 21 H 0.079 0.921 22 H 0.105 0.895 23 H 0.105 0.895 24 H 0.161 0.839 25 H 0.160 0.840 26 H 0.172 0.828 27 H 0.168 0.832 28 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.077 -15.522 1.148 15.703 hybrid contribution -0.776 0.957 0.748 1.441 sum 1.301 -14.566 1.896 14.746 Atomic orbital electron populations 1.69940 1.06236 1.27828 1.47698 1.24934 0.95059 0.99626 0.93477 0.86336 0.80019 0.81606 0.78821 1.19851 1.20605 1.19052 1.20354 0.92992 0.88339 1.55331 0.90935 1.27500 1.09573 1.09429 1.06838 1.09334 0.79911 0.78258 0.75322 1.93482 1.69775 1.85790 1.45693 1.93493 1.69721 1.85748 1.45605 1.29647 1.15084 1.13989 1.12462 1.20215 1.00282 0.97164 0.94961 1.21670 0.93910 0.93145 0.98999 1.21839 1.00256 0.97316 0.97811 1.21711 0.96172 0.91141 0.90340 1.98399 1.69994 1.33484 1.98688 1.67056 1.11310 1.09886 1.30156 1.22760 0.91991 0.89476 0.98271 0.92133 0.89499 0.89540 0.83863 0.83975 0.82781 0.83219 0.80896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.97 13.29 55.43 0.74 -23.23 15 2 C 0.08 2.01 5.46 -17.82 -0.10 1.91 15 3 Si 0.91 20.52 29.54 -169.99 -5.02 15.50 15 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 6 H -0.27 -5.98 7.11 56.52 0.40 -5.57 15 7 C -0.53 -14.15 9.13 -34.44 -0.31 -14.46 15 8 H 0.07 1.93 7.71 -52.49 -0.40 1.53 15 9 C -0.40 -8.81 5.56 36.01 0.20 -8.61 15 10 S 2.39 45.59 4.62 -107.50 -0.50 45.10 15 11 O -0.95 -20.66 18.10 -57.83 -1.05 -21.71 15 12 O -0.95 -20.84 18.10 -57.83 -1.05 -21.89 15 13 C -0.59 -7.69 5.96 36.01 0.21 -7.48 15 14 C -0.12 -1.69 5.16 -104.48 -0.54 -2.23 15 15 C -0.05 -0.63 9.86 -39.29 -0.39 -1.01 15 16 C -0.15 -1.75 9.88 -39.40 -0.39 -2.14 15 17 C 0.17 2.26 7.27 -17.44 -0.13 2.14 15 18 Cl -0.03 -0.39 29.11 -51.86 -1.51 -1.90 15 19 N -0.47 -7.01 10.34 -10.36 -0.11 -7.11 15 20 C 0.13 1.87 10.86 -17.55 -0.19 1.68 15 21 H 0.27 6.86 8.31 -40.82 -0.34 6.52 15 22 H 0.09 1.85 8.14 -51.93 -0.42 1.43 15 23 H 0.09 1.84 8.14 -51.93 -0.42 1.42 15 24 H 0.14 1.49 8.09 -51.92 -0.42 1.07 15 25 H 0.14 1.47 8.10 -51.93 -0.42 1.05 15 26 H 0.15 1.55 8.06 -52.49 -0.42 1.13 15 27 H 0.15 1.26 8.06 -52.49 -0.42 0.84 15 28 H 0.17 2.08 8.06 -52.48 -0.42 1.66 15 LS Contribution 286.21 15.07 4.31 4.31 Total: -1.00 -33.21 286.21 -8.30 -41.52 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -2.49 Total: -0.38 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: -1.63 Total: -30.20 kcal Atomic # 7 Polarization: -30.97 SS G_CDS: 0.63 Total: -30.35 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -2.09 Total: -43.60 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 45.59 SS G_CDS: -0.50 Total: 45.10 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.51 Total: -1.90 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.21 -8.30 -41.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265322.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.750 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds