Wall clock time and date at job start Mon Mar 30 2020 20:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00148 * 2 1 4 4 H 1.48495 * 109.46908 * 269.99927 * 3 2 1 5 5 H 1.48492 * 109.47261 * 30.00049 * 3 2 1 6 6 H 1.48497 * 109.46941 * 150.00105 * 3 2 1 7 7 C 1.37878 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00262 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99792 * 0.02562 * 7 2 1 10 10 S 1.81397 * 109.46864 * 179.97438 * 9 7 2 11 11 O 1.42107 * 108.57920 * 65.50890 * 10 9 7 12 12 O 1.42098 * 108.58111 * 294.48214 * 10 9 7 13 13 C 1.81403 * 101.91995 * 179.97438 * 10 9 7 14 14 C 1.50705 * 109.46845 * 179.97438 * 13 10 9 15 15 C 1.38705 * 120.40098 * 90.00542 * 14 13 10 16 16 C 1.38565 * 118.43594 * 180.02562 * 15 14 13 17 17 C 1.38398 * 119.14885 * 359.97438 * 16 15 14 18 18 Cl 1.73605 * 119.63252 * 180.02562 * 17 16 15 19 19 N 1.31943 * 120.73083 * 359.97438 * 17 16 15 20 20 C 1.31905 * 121.70686 * 0.04743 * 19 17 16 21 21 H 0.97003 * 119.99587 * 0.02562 * 1 2 3 22 22 H 1.08992 * 109.47081 * 59.99380 * 9 7 2 23 23 H 1.08998 * 109.46481 * 299.99393 * 9 7 2 24 24 H 1.09003 * 109.46428 * 60.00416 * 13 10 9 25 25 H 1.08993 * 109.47383 * 299.99684 * 13 10 9 26 26 H 1.08001 * 120.78816 * 359.97438 * 15 14 13 27 27 H 1.08000 * 120.42478 * 179.72686 * 16 15 14 28 28 H 1.08007 * 119.60917 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 16 2.4296 -3.8780 0.0005 11 8 3.1483 -3.8592 1.2263 12 8 3.1481 -3.8594 -1.2253 13 6 1.3240 -5.3161 0.0013 14 6 2.1444 -6.5803 0.0008 15 6 2.5272 -7.1692 1.1969 16 6 3.2814 -8.3306 1.1489 17 6 3.6248 -8.8609 -0.0825 18 17 4.5689 -10.3159 -0.1573 19 7 3.2418 -8.2735 -1.2001 20 6 2.5237 -7.1671 -1.1909 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8896 23 1 0.6240 -2.5566 0.8904 24 1 0.6950 -5.2912 -0.8885 25 1 0.6956 -5.2908 0.8915 26 1 2.2448 -6.7324 2.1434 27 1 3.6006 -8.8135 2.0606 28 1 2.2289 -6.7145 -2.1262 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265322.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:47 Heat of formation + Delta-G solvation = -75.470209 kcal Electronic energy + Delta-G solvation = -16387.413794 eV Core-core repulsion = 13362.488130 eV Total energy + Delta-G solvation = -3024.925665 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.42991 -37.79870 -37.78066 -36.82874 -35.37161 -34.86580 -33.14410 -31.03585 -28.78504 -25.53752 -24.97311 -23.48957 -19.73406 -18.95477 -18.51873 -18.02389 -17.59551 -17.12537 -16.72781 -16.40967 -15.83213 -15.52994 -15.01035 -14.45050 -14.34626 -14.01921 -13.89243 -13.40564 -13.17961 -12.96440 -12.90394 -12.85577 -12.71858 -12.52107 -12.40284 -12.06582 -11.75236 -11.13607 -10.90589 -10.78121 -10.75303 -9.90598 -8.39617 -6.54640 -0.93978 -0.13694 0.02738 0.66782 1.38800 1.39311 1.51076 2.15318 2.31677 2.43352 2.84960 2.94467 3.24844 3.31570 3.43876 3.70868 3.78518 3.85700 4.25885 4.53766 4.54731 4.76206 4.81857 4.82772 4.96059 5.31675 5.38880 5.77994 6.50100 6.55155 7.15660 8.72343 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.054372 B = 0.003894 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.847220 B = 7188.353908 C = 7244.745544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.026 3.974 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.562 4.562 8 H 0.058 0.942 9 C -0.423 4.423 10 S 2.402 3.598 11 O -0.984 6.984 12 O -0.987 6.987 13 C -0.550 4.550 14 C -0.144 4.144 15 C -0.052 4.052 16 C -0.147 4.147 17 C 0.158 3.842 18 Cl -0.023 7.023 19 N -0.500 5.500 20 C 0.121 3.879 21 H 0.273 0.727 22 H 0.089 0.911 23 H 0.091 0.909 24 H 0.177 0.823 25 H 0.180 0.820 26 H 0.180 0.820 27 H 0.182 0.818 28 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.556 -16.287 2.693 16.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.177 4.177 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.601 4.601 8 H 0.076 0.924 9 C -0.555 4.555 10 S 2.593 3.407 11 O -0.981 6.981 12 O -0.984 6.984 13 C -0.679 4.679 14 C -0.148 4.148 15 C -0.079 4.079 16 C -0.167 4.167 17 C -0.006 4.006 18 Cl 0.005 6.995 19 N -0.210 5.210 20 C -0.037 4.037 21 H 0.082 0.918 22 H 0.108 0.892 23 H 0.109 0.891 24 H 0.195 0.805 25 H 0.198 0.802 26 H 0.197 0.803 27 H 0.200 0.800 28 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.671 -16.670 1.889 16.859 hybrid contribution -0.633 1.118 0.528 1.389 sum 1.038 -15.551 2.417 15.772 Atomic orbital electron populations 1.69992 1.07140 1.28728 1.48460 1.25728 0.95975 1.02751 0.93241 0.85562 0.78938 0.78352 0.79176 1.19131 1.19263 1.19167 1.20754 0.92906 0.91032 1.55371 0.92414 1.27608 1.10586 1.10354 1.06990 1.08387 0.79563 0.78934 0.73856 1.93433 1.71143 1.86900 1.46616 1.93442 1.71226 1.86909 1.46804 1.29230 1.13420 1.09006 1.16284 1.20322 1.01395 0.97488 0.95566 1.22103 0.93086 0.93118 0.99576 1.22204 0.99205 0.96912 0.98387 1.22088 0.96174 0.91575 0.90789 1.98401 1.69636 1.32731 1.98685 1.67055 1.12190 1.10569 1.31235 1.23062 0.91927 0.89557 0.99172 0.91774 0.89248 0.89099 0.80537 0.80226 0.80303 0.80044 0.79792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.61 13.29 21.45 0.28 -49.33 15 2 C 0.03 1.41 5.46 84.65 0.46 1.87 15 3 Si 0.96 42.21 29.54 68.60 2.03 44.24 15 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 15 5 H -0.27 -11.17 7.11 99.48 0.71 -10.47 15 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 7 C -0.56 -30.59 9.13 25.60 0.23 -30.35 15 8 H 0.06 3.19 7.71 -2.91 -0.02 3.17 15 9 C -0.42 -18.81 5.56 71.24 0.40 -18.41 15 10 S 2.40 90.14 4.62 -56.49 -0.26 89.88 15 11 O -0.98 -42.40 18.10 -127.37 -2.31 -44.70 15 12 O -0.99 -43.59 18.10 -127.37 -2.31 -45.90 15 13 C -0.55 -12.54 5.96 71.24 0.42 -12.12 15 14 C -0.14 -3.55 5.16 -19.77 -0.10 -3.65 15 15 C -0.05 -1.11 9.86 22.46 0.22 -0.89 15 16 C -0.15 -2.94 9.88 22.39 0.22 -2.72 15 17 C 0.16 3.86 7.27 84.71 0.62 4.48 15 18 Cl -0.02 -0.48 29.11 -2.72 -0.08 -0.56 15 19 N -0.50 -14.02 10.34 -186.69 -1.93 -15.95 15 20 C 0.12 3.18 10.86 84.66 0.92 4.09 15 21 H 0.27 13.95 8.31 -92.71 -0.77 13.18 15 22 H 0.09 3.84 8.14 -2.39 -0.02 3.82 15 23 H 0.09 3.87 8.14 -2.39 -0.02 3.85 15 24 H 0.18 2.96 8.09 -2.39 -0.02 2.94 15 25 H 0.18 2.86 8.10 -2.39 -0.02 2.84 15 26 H 0.18 2.84 8.06 -2.91 -0.02 2.82 15 27 H 0.18 2.35 8.06 -2.91 -0.02 2.32 15 28 H 0.19 4.15 8.06 -2.91 -0.02 4.13 15 Total: -1.00 -73.08 286.21 0.00 -73.08 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: 1.18 Total: 6.94 kcal Atomic # 6 Polarization: -61.09 SS G_CDS: 3.39 Total: -57.70 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: -1.65 Total: -65.28 kcal Atomic # 8 Polarization: -85.99 SS G_CDS: -4.61 Total: -90.60 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: 90.14 SS G_CDS: -0.26 Total: 89.88 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.08 Total: -0.56 kcal Total: -73.08 0.00 -73.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265322.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.391 kcal (2) G-P(sol) polarization free energy of solvation -73.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds