Wall clock time and date at job start Mon Mar 30 2020 20:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00253 * 2 1 4 4 H 1.48498 * 109.47244 * 240.00189 * 3 2 1 5 5 H 1.48506 * 109.46869 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47511 * 119.99860 * 3 2 1 7 7 C 1.37881 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99743 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99888 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47147 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47478 * 179.97438 * 10 9 7 12 12 O 1.45194 * 109.47431 * 180.02562 * 11 10 9 13 13 C 1.34896 * 117.00487 * 180.02562 * 12 11 10 14 14 O 1.21636 * 119.99617 * 359.97438 * 13 12 11 15 15 C 1.46330 * 120.00508 * 179.97438 * 13 12 11 16 16 S 1.76209 * 126.18018 * 359.97438 * 15 13 12 17 17 C 1.70922 * 90.39178 * 179.97438 * 16 15 13 18 18 N 1.29384 * 110.63038 * 0.02562 * 17 16 15 19 19 C 1.31001 * 117.46740 * 359.97438 * 18 17 16 20 20 Cl 1.73596 * 123.06148 * 180.02562 * 19 18 17 21 21 H 0.96996 * 119.99740 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47605 * 59.99826 * 9 7 2 23 23 H 1.09000 * 109.47204 * 299.99311 * 9 7 2 24 24 H 1.09006 * 109.47249 * 59.99766 * 10 9 7 25 25 H 1.09001 * 109.47265 * 299.99755 * 10 9 7 26 26 H 1.08998 * 109.47109 * 59.99442 * 11 10 9 27 27 H 1.09001 * 109.46784 * 300.00187 * 11 10 9 28 28 H 1.07995 * 124.68360 * 180.26199 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 8 2.4239 -6.0907 0.0018 13 6 1.9084 -7.3373 0.0019 14 8 0.7025 -7.4967 0.0019 15 6 2.7997 -8.4978 0.0019 16 16 4.5613 -8.4563 0.0012 17 6 4.6132 -10.1647 0.0025 18 7 3.4168 -10.6572 0.0028 19 6 2.4156 -9.8123 0.0026 20 17 0.7535 -10.3133 0.0036 21 1 -0.4849 0.8400 0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6242 -2.5567 0.8903 24 1 2.8720 -3.6043 0.8905 25 1 2.8719 -3.6044 -0.8895 26 1 0.8533 -5.0451 -0.8885 27 1 0.8540 -5.0446 0.8914 28 1 5.5195 -10.7520 0.0067 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919415003.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:01 Heat of formation + Delta-G solvation = -54.541413 kcal Electronic energy + Delta-G solvation = -15807.236265 eV Core-core repulsion = 12783.218141 eV Total energy + Delta-G solvation = -3024.018124 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.58702 -39.71076 -36.89056 -36.47063 -34.03812 -31.86811 -31.04110 -27.43312 -26.45773 -23.79786 -22.30291 -20.52892 -20.27339 -19.33125 -17.11896 -17.04452 -16.53356 -16.24098 -15.29216 -15.19599 -14.91769 -14.49380 -13.98797 -13.31437 -12.56610 -12.24174 -12.23873 -12.04997 -11.90560 -11.36346 -10.98487 -10.77309 -10.69446 -10.60219 -10.46686 -10.27399 -10.09570 -9.77184 -9.55377 -9.29585 -9.20957 -8.40757 -6.05571 -4.08938 -0.38704 0.51062 0.93704 1.77188 1.82637 2.59394 2.63974 3.30893 3.35514 3.37721 3.93284 4.35404 4.41276 4.81824 5.02996 5.30288 5.51460 5.53559 5.94050 6.30716 6.48231 6.72874 6.83827 6.92421 7.56822 7.67639 7.68919 7.92156 8.32793 8.96939 9.55388 11.05738 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.036108 B = 0.003319 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.259295 B = 8433.577764 C = 9183.089101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.109 4.109 11 C 0.070 3.930 12 O -0.353 6.353 13 C 0.535 3.465 14 O -0.477 6.477 15 C -0.275 4.275 16 S 0.274 5.726 17 C 0.029 3.971 18 N -0.471 5.471 19 C 0.185 3.815 20 Cl 0.032 6.968 21 H 0.262 0.738 22 H 0.020 0.980 23 H 0.020 0.980 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.920 -20.906 0.007 23.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.002 4.002 12 O -0.270 6.270 13 C 0.376 3.624 14 O -0.366 6.366 15 C -0.399 4.399 16 S 0.529 5.471 17 C -0.265 4.265 18 N -0.186 5.186 19 C 0.018 3.982 20 Cl 0.061 6.939 21 H 0.072 0.928 22 H 0.038 0.962 23 H 0.038 0.962 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 10.018 -20.634 0.007 22.938 hybrid contribution -0.715 0.499 0.000 0.872 sum 9.303 -20.135 0.006 22.181 Atomic orbital electron populations 1.69952 1.06083 1.26915 1.50319 1.25034 0.94890 0.99377 0.95165 0.86598 0.79526 0.82868 0.78653 1.20180 1.21249 1.20185 1.21117 0.93073 0.90645 1.51280 0.92466 1.19048 0.93808 0.90639 0.97761 1.21790 1.00016 0.90769 1.02065 1.23621 0.91087 0.82909 1.02598 1.86574 1.42533 1.14313 1.83534 1.19080 0.86080 0.82778 0.74412 1.90952 1.14578 1.86504 1.44535 1.24786 0.98507 0.95527 1.21076 1.84422 0.97420 1.04118 1.61144 1.28754 0.98796 0.98001 1.00956 1.65733 0.98126 1.37454 1.17319 1.21182 0.90420 0.86545 1.00062 1.98459 1.08099 1.91486 1.95901 0.92806 0.96177 0.96166 0.92043 0.92038 0.91090 0.91097 0.76728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.29 55.43 0.74 -25.81 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 15 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 15 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 9 C 0.02 0.62 4.97 -27.89 -0.14 0.48 15 10 C -0.11 -2.18 5.53 -26.73 -0.15 -2.33 15 11 C 0.07 1.26 5.48 37.16 0.20 1.46 15 12 O -0.35 -5.74 10.12 -41.03 -0.42 -6.15 15 13 C 0.54 8.40 7.92 33.98 0.27 8.67 15 14 O -0.48 -8.50 14.96 -19.37 -0.29 -8.79 15 15 C -0.27 -3.50 6.52 -36.80 -0.24 -3.74 15 16 S 0.27 2.25 23.08 -107.50 -2.48 -0.23 15 17 C 0.03 0.20 12.20 51.73 0.63 0.83 15 18 N -0.47 -5.06 10.50 -12.20 -0.13 -5.19 15 19 C 0.18 2.33 7.42 -18.37 -0.14 2.20 15 20 Cl 0.03 0.42 27.39 -51.86 -1.42 -1.00 15 21 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 22 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 23 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 26 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 27 H 0.07 1.27 8.14 -51.93 -0.42 0.84 15 28 H 0.22 0.50 8.06 -52.49 -0.42 0.08 15 LS Contribution 287.76 15.07 4.34 4.34 Total: -1.00 -31.88 287.76 -7.15 -39.04 By element: Atomic # 1 Polarization: -4.26 SS G_CDS: -2.50 Total: -6.76 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 0.03 Total: -5.73 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.61 Total: -31.00 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.70 Total: -14.94 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -2.48 Total: -0.23 kcal Atomic # 17 Polarization: 0.42 SS G_CDS: -1.42 Total: -1.00 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.88 -7.15 -39.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919415003.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.504 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds