Wall clock time and date at job start Mon Mar 30 2020 20:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46961 * 2 1 4 4 N 1.46504 * 109.46782 * 240.00382 * 2 1 3 5 5 C 1.39673 * 119.99962 * 84.99844 * 4 2 1 6 6 C 1.38913 * 120.07019 * 179.97438 * 5 4 2 7 7 C 1.38106 * 119.92415 * 179.97438 * 6 5 4 8 8 C 1.38285 * 120.07208 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.92419 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47064 * 89.99659 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 C 1.38286 * 120.15383 * 0.26802 * 8 7 6 19 19 C 1.38108 * 120.06868 * 359.45265 * 18 8 7 20 20 C 1.52998 * 109.47362 * 120.00156 * 2 1 3 21 21 H 1.08999 * 110.33425 * 60.79602 * 20 2 1 22 22 C 1.54899 * 110.37372 * 183.17179 * 20 2 1 23 23 C 1.55140 * 101.65282 * 155.89848 * 22 20 2 24 24 C 1.54318 * 103.01967 * 324.34696 * 23 22 20 25 25 N 1.47439 * 107.23333 * 22.28391 * 24 23 22 26 26 H 1.09007 * 109.46974 * 299.99840 * 1 2 3 27 27 H 1.08999 * 109.47383 * 59.99561 * 1 2 3 28 28 H 1.09004 * 109.46961 * 179.97438 * 1 2 3 29 29 H 0.97001 * 119.99392 * 264.99947 * 4 2 1 30 30 H 1.08000 * 120.03949 * 0.02562 * 6 5 4 31 31 H 1.07993 * 119.96110 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47152 * 329.99751 * 9 8 7 33 33 H 1.09001 * 109.46980 * 209.99852 * 9 8 7 34 34 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 35 35 H 1.07999 * 119.96544 * 179.70952 * 18 8 7 36 36 H 1.08005 * 120.03586 * 180.27157 * 19 18 8 37 37 H 1.09003 * 110.99329 * 273.98778 * 22 20 2 38 38 H 1.09003 * 110.99358 * 37.81200 * 22 20 2 39 39 H 1.09000 * 110.70675 * 205.96319 * 23 22 20 40 40 H 1.08997 * 110.70487 * 82.72894 * 23 22 20 41 41 H 1.09003 * 109.88633 * 262.87585 * 24 23 22 42 42 H 1.09005 * 109.89025 * 141.68987 * 24 23 22 43 43 H 1.00904 * 111.00240 * 123.25772 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1516 0.0063 -2.3994 6 6 2.6149 -0.6469 -3.5344 7 6 2.7451 0.0449 -4.7226 8 6 2.4153 1.3865 -4.7830 9 6 2.5591 2.1383 -6.0811 10 6 1.2728 2.0452 -6.8608 11 1 0.4348 1.4969 -6.4565 12 6 1.1655 2.6610 -8.0897 13 7 2.1858 3.3292 -8.5818 14 14 -0.4292 2.5462 -9.0557 15 1 -1.5339 3.1390 -8.2598 16 1 -0.2874 3.2870 -10.3350 17 1 -0.7338 1.1210 -9.3408 18 6 1.9595 2.0413 -3.6535 19 6 1.8215 1.3540 -2.4635 20 6 2.0401 -0.7213 1.2492 21 1 1.6962 -1.7556 1.2563 22 6 3.5868 -0.6642 1.3111 23 6 3.8462 -0.8383 2.8307 24 6 2.6646 -0.0824 3.4740 25 7 1.5872 -0.0200 2.4694 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 2.2489 -1.6317 -1.1527 30 1 2.8723 -1.6948 -3.4880 31 1 3.1048 -0.4624 -5.6055 32 1 3.3702 1.7032 -6.6651 33 1 2.7825 3.1846 -5.8722 34 1 2.1103 3.7621 -9.4466 35 1 1.7072 3.0903 -3.7030 36 1 1.4613 1.8649 -1.5828 37 1 4.0307 -1.4818 0.7430 38 1 3.9564 0.2992 0.9598 39 1 4.7952 -0.3832 3.1143 40 1 3.8254 -1.8925 3.1069 41 1 2.9748 0.9259 3.7483 42 1 2.3177 -0.6191 4.3570 43 1 0.7361 -0.4279 2.8262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925826472.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:17 Heat of formation + Delta-G solvation = -4.454960 kcal Electronic energy + Delta-G solvation = -20577.005839 eV Core-core repulsion = 17620.057551 eV Total energy + Delta-G solvation = -2956.948288 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.61445 -39.56594 -36.96506 -35.13017 -33.11122 -31.63587 -31.34299 -30.59170 -28.84190 -27.78969 -24.96418 -24.00695 -23.15567 -21.86761 -21.54248 -20.76940 -18.51724 -18.38982 -17.50761 -17.11800 -16.67971 -16.02855 -15.64371 -15.31478 -14.71586 -14.66245 -14.39055 -14.29754 -14.19385 -13.76335 -13.67631 -13.39488 -13.32448 -13.16775 -12.92018 -12.64603 -12.48667 -12.38942 -12.24023 -12.10015 -11.73624 -11.63017 -11.52704 -11.50739 -11.31053 -10.57197 -10.53764 -9.65864 -9.39299 -8.28530 -7.92382 -6.29434 0.69570 0.91868 1.39805 1.43124 1.51385 2.42159 2.47458 3.13327 3.17919 3.39409 3.63184 3.77920 4.07863 4.13437 4.19493 4.25048 4.29800 4.41966 4.51807 4.57774 4.69424 4.73647 4.80331 4.83094 4.92044 4.96150 4.99740 5.03138 5.12890 5.17595 5.23397 5.34527 5.39156 5.40679 5.42435 5.58296 5.72106 5.82943 5.91491 6.07220 6.25579 6.26530 6.48707 6.62915 6.83786 7.02695 7.38735 8.92751 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.037837 B = 0.003159 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.829350 B = 8861.795206 C = 9109.225933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.168 3.832 3 H 0.066 0.934 4 N -0.735 5.735 5 C 0.205 3.795 6 C -0.190 4.190 7 C -0.089 4.089 8 C -0.124 4.124 9 C 0.064 3.936 10 C -0.527 4.527 11 H 0.052 0.948 12 C 0.001 3.999 13 N -0.933 5.933 14 Si 0.965 3.035 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.267 1.267 18 C -0.091 4.091 19 C -0.194 4.194 20 C 0.080 3.920 21 H 0.067 0.933 22 C -0.123 4.123 23 C -0.141 4.141 24 C 0.048 3.952 25 N -0.687 5.687 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.058 0.942 29 H 0.403 0.597 30 H 0.140 0.860 31 H 0.110 0.890 32 H -0.002 1.002 33 H -0.004 1.004 34 H 0.265 0.735 35 H 0.106 0.894 36 H 0.129 0.871 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.023 -11.671 25.426 27.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.062 3.938 3 H 0.084 0.916 4 N -0.367 5.367 5 C 0.103 3.897 6 C -0.212 4.212 7 C -0.108 4.108 8 C -0.125 4.125 9 C 0.027 3.973 10 C -0.565 4.565 11 H 0.070 0.930 12 C -0.196 4.196 13 N -0.573 5.573 14 Si 0.789 3.211 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.192 1.192 18 C -0.110 4.110 19 C -0.216 4.216 20 C -0.030 4.030 21 H 0.085 0.915 22 C -0.161 4.161 23 C -0.179 4.179 24 C -0.081 4.081 25 N -0.318 5.318 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.239 0.761 30 H 0.158 0.842 31 H 0.129 0.871 32 H 0.016 0.984 33 H 0.014 0.986 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.147 0.853 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.113 -10.791 25.232 27.443 hybrid contribution -0.521 -0.750 -0.833 1.236 sum -0.408 -11.541 24.399 26.994 Atomic orbital electron populations 1.22195 0.95810 1.02021 1.01895 1.20701 0.93519 0.96288 0.83337 0.91625 1.44425 1.74131 1.12096 1.06052 1.17601 0.94400 0.91062 0.86648 1.20657 1.08434 1.00502 0.91649 1.20825 0.98975 0.93467 0.97525 1.20116 1.01506 0.95309 0.95614 1.17970 0.95738 0.93482 0.90099 1.21432 0.99165 1.32680 1.03209 0.92954 1.25961 1.00273 0.94747 0.98648 1.70085 1.32592 1.35256 1.19363 0.85503 0.79281 0.78639 0.77647 1.19326 1.20474 1.19237 1.20816 0.98374 0.99371 0.92412 1.20665 1.09230 0.93797 0.97951 1.22417 0.94841 0.95821 0.89926 0.91533 1.22687 0.94489 1.02164 0.96796 1.22809 0.99334 1.01122 0.94656 1.22605 0.90969 1.00458 0.94079 1.61475 1.06785 1.58609 1.04938 0.90425 0.94301 0.92303 0.76139 0.84222 0.87147 0.98405 0.98601 0.92648 0.87600 0.85343 0.90335 0.92313 0.90393 0.90470 0.91335 0.91413 0.83329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 9.29 71.98 0.67 -2.40 16 2 C 0.17 3.25 2.02 44.99 0.09 3.34 16 3 H 0.07 1.55 6.48 -2.38 -0.02 1.54 16 4 N -0.74 -15.97 4.97 -318.95 -1.58 -17.56 16 5 C 0.21 6.25 6.64 38.21 0.25 6.51 16 6 C -0.19 -6.20 9.90 22.40 0.22 -5.98 16 7 C -0.09 -3.66 9.69 22.25 0.22 -3.45 16 8 C -0.12 -5.83 5.07 -19.84 -0.10 -5.93 16 9 C 0.06 3.64 5.10 29.10 0.15 3.79 16 10 C -0.53 -31.58 9.09 25.60 0.23 -31.35 16 11 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 12 C 0.00 0.08 5.46 84.66 0.46 0.54 16 13 N -0.93 -58.23 13.29 21.45 0.28 -57.94 16 14 Si 0.97 45.78 29.54 68.60 2.03 47.80 16 15 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 18 C -0.09 -3.84 9.69 22.25 0.22 -3.62 16 19 C -0.19 -6.69 8.85 22.40 0.20 -6.50 16 20 C 0.08 1.16 2.86 45.38 0.13 1.29 16 21 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 22 C -0.12 -1.82 6.23 31.98 0.20 -1.62 16 23 C -0.14 -1.58 6.94 31.77 0.22 -1.36 16 24 C 0.05 0.55 7.58 86.65 0.66 1.20 16 25 N -0.69 -9.23 6.40 -482.47 -3.09 -12.32 16 26 H 0.08 1.31 7.69 -2.38 -0.02 1.29 16 27 H 0.04 0.92 7.71 -2.39 -0.02 0.91 16 28 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.40 7.02 8.62 -92.71 -0.80 6.22 16 30 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 32 H 0.00 -0.14 8.08 -2.39 -0.02 -0.16 16 33 H 0.00 -0.26 8.08 -2.39 -0.02 -0.28 16 34 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 35 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 36 H 0.13 3.91 6.12 -2.91 -0.02 3.90 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 1.12 8.06 -2.39 -0.02 1.10 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 0.55 8.14 -2.38 -0.02 0.54 16 43 H 0.35 3.61 8.91 -89.69 -0.80 2.81 16 Total: -1.00 -68.22 346.89 0.85 -67.37 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -0.60 Total: 18.20 kcal Atomic # 6 Polarization: -49.36 SS G_CDS: 3.81 Total: -45.55 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -4.39 Total: -87.82 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -68.22 0.85 -67.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925826472.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.914 kcal (2) G-P(sol) polarization free energy of solvation -68.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds