Wall clock time and date at job start Mon Mar 30 2020 20:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00474 * 2 1 4 4 H 1.48494 * 109.47614 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46707 * 300.00193 * 3 2 1 6 6 H 1.48501 * 109.47022 * 59.99399 * 3 2 1 7 7 C 1.37884 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99930 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00070 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47198 * 300.00433 * 9 7 2 11 11 O 1.42906 * 109.46840 * 59.99789 * 9 7 2 12 12 C 1.52998 * 109.47250 * 179.97438 * 9 7 2 13 13 N 1.46900 * 109.46969 * 180.02562 * 12 9 7 14 14 C 1.48561 * 111.00071 * 285.41743 * 13 12 9 15 15 C 1.54380 * 104.59504 * 200.96234 * 14 13 12 16 16 H 1.08999 * 117.60456 * 244.71569 * 15 14 13 17 17 C 1.52998 * 118.12711 * 89.19919 * 15 14 13 18 18 H 1.08995 * 117.44653 * 15.97368 * 17 15 14 19 19 Br 1.96601 * 117.44566 * 160.72996 * 17 15 14 20 20 C 1.54264 * 105.05927 * 23.85552 * 15 14 13 21 21 H 1.08998 * 121.78204 * 223.00945 * 20 15 14 22 22 C 1.48566 * 110.99544 * 170.00138 * 13 12 9 23 23 H 0.97000 * 119.99547 * 0.02562 * 1 2 3 24 24 H 0.96692 * 113.99979 * 60.00250 * 11 9 7 25 25 H 1.09004 * 109.46659 * 60.00192 * 12 9 7 26 26 H 1.09004 * 109.46919 * 300.00061 * 12 9 7 27 27 H 1.08999 * 110.40911 * 319.74405 * 14 13 12 28 28 H 1.09001 * 110.40855 * 82.06634 * 14 13 12 29 29 H 1.08999 * 110.41049 * 277.81490 * 22 13 12 30 30 H 1.08999 * 110.41330 * 40.26438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 8 0.4299 -2.5751 -1.1666 12 6 2.2452 -3.6622 0.0005 13 7 1.5106 -4.9343 -0.0001 14 6 0.9246 -5.2114 1.3367 15 6 0.6813 -6.7358 1.3463 16 1 -0.3504 -7.0823 1.4074 17 6 1.8116 -7.6436 1.8354 18 1 2.6221 -7.1787 2.3967 19 35 1.3326 -9.4671 2.3927 20 6 1.6699 -7.3061 0.3085 21 1 1.3741 -8.0770 -0.4030 22 6 2.4274 -6.0783 -0.2409 23 1 -0.4849 0.8401 -0.0004 24 1 0.9223 -2.5299 -1.9975 25 1 2.8718 -3.6044 0.8906 26 1 2.8719 -3.6044 -0.8895 27 1 1.6253 -4.9332 2.1239 28 1 -0.0157 -4.6737 1.4583 29 1 2.6175 -6.1950 -1.3079 30 1 3.3632 -5.9358 0.2995 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931750960.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:22 Heat of formation + Delta-G solvation = -8.074331 kcal Electronic energy + Delta-G solvation = -14129.089246 eV Core-core repulsion = 11585.738624 eV Total energy + Delta-G solvation = -2543.350622 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 275.026 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.63876 -35.97150 -33.57690 -32.08377 -30.27967 -28.49684 -28.03733 -25.23748 -22.62032 -20.83177 -20.47322 -19.76087 -17.03078 -16.07482 -15.07466 -14.59458 -14.43334 -13.89508 -13.71429 -13.25908 -12.88318 -12.59458 -12.13793 -11.51608 -11.37285 -11.11490 -11.03056 -10.93702 -10.77994 -10.61482 -10.46485 -10.08320 -9.81377 -9.58716 -9.04010 -8.59153 -8.17534 -7.85505 -6.02146 -4.21000 1.43057 3.19081 3.25335 3.33783 3.36581 4.13234 4.36716 4.49526 4.62317 4.81089 5.09761 5.17342 5.25738 5.51308 5.61454 5.82725 5.92521 6.00761 6.03271 6.20849 6.29689 6.49878 6.75045 7.17378 7.44470 7.73107 7.84217 8.17504 8.83146 9.45031 9.61191 11.01999 Molecular weight = 275.03amu Principal moments of inertia in cm(-1) A = 0.062419 B = 0.003643 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.470505 B = 7685.078694 C = 7706.116146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.576 4.576 8 H 0.055 0.945 9 C 0.240 3.760 10 H 0.053 0.947 11 O -0.554 6.554 12 C 0.019 3.981 13 N -0.494 5.494 14 C 0.062 3.938 15 C -0.132 4.132 16 H 0.125 0.875 17 C -0.103 4.103 18 H 0.134 0.866 19 Br -0.122 7.122 20 C -0.136 4.136 21 H 0.128 0.872 22 C 0.056 3.944 23 H 0.260 0.740 24 H 0.342 0.658 25 H 0.031 0.969 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.827 -17.730 3.655 18.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.615 4.615 8 H 0.073 0.927 9 C 0.182 3.818 10 H 0.071 0.929 11 O -0.355 6.355 12 C -0.109 4.109 13 N -0.218 5.218 14 C -0.066 4.066 15 C -0.152 4.152 16 H 0.143 0.857 17 C -0.199 4.199 18 H 0.151 0.849 19 Br -0.040 7.040 20 C -0.156 4.156 21 H 0.146 0.854 22 C -0.072 4.072 23 H 0.070 0.930 24 H 0.185 0.815 25 H 0.049 0.951 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.609 -18.228 3.896 18.822 hybrid contribution 1.755 1.294 0.265 2.197 sum 4.364 -16.935 4.161 17.976 Atomic orbital electron populations 1.70094 1.05922 1.26331 1.46967 1.25022 0.94674 0.99086 0.93806 0.86626 0.80180 0.83885 0.77733 1.19754 1.20817 1.20887 1.21692 0.93162 0.91625 1.54971 0.92696 1.19258 0.87704 0.88324 0.86550 0.92926 1.86567 1.37705 1.96276 1.14961 1.23308 0.97509 0.90158 0.99898 1.65678 1.28500 1.01550 1.26063 1.22730 1.01560 0.91262 0.91033 1.23798 0.95749 0.94089 1.01529 0.85719 1.26404 1.04404 0.89439 0.99680 0.84860 1.97319 1.94030 1.20943 1.91705 1.24371 1.02438 1.00127 0.88627 0.85444 1.22739 0.94223 0.89001 1.01235 0.93011 0.81454 0.95064 0.91571 0.93708 0.88574 0.89339 0.93954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.21 12.84 55.43 0.71 -24.50 16 2 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.58 -15.58 8.76 -34.44 -0.30 -15.88 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.24 5.96 2.89 -27.88 -0.08 5.88 16 10 H 0.05 1.44 7.47 -51.93 -0.39 1.05 16 11 O -0.55 -14.31 12.59 -35.23 -0.44 -14.75 16 12 C 0.02 0.38 4.43 -3.83 -0.02 0.36 16 13 N -0.49 -8.61 5.20 -229.96 -1.20 -9.80 16 14 C 0.06 0.99 5.71 -2.18 -0.01 0.98 16 15 C -0.13 -1.71 6.80 -89.24 -0.61 -2.32 16 16 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 17 C -0.10 -1.18 6.74 -24.56 -0.17 -1.35 16 18 H 0.13 1.48 8.14 -51.93 -0.42 1.06 16 19 Br -0.12 -1.34 34.19 -68.01 -2.33 -3.67 16 20 C -0.14 -1.65 7.12 -87.06 -0.62 -2.27 16 21 H 0.13 1.43 8.14 -51.93 -0.42 1.01 16 22 C 0.06 0.78 6.29 -2.18 -0.01 0.77 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.34 7.93 9.04 45.56 0.41 8.35 16 25 H 0.03 0.61 7.77 -51.93 -0.40 0.21 16 26 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 27 H 0.04 0.70 7.75 -51.93 -0.40 0.30 16 28 H 0.10 1.68 7.85 -51.93 -0.41 1.27 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.04 0.57 8.00 -51.93 -0.42 0.15 16 LS Contribution 274.38 15.07 4.13 4.13 Total: -1.00 -29.35 274.38 -9.31 -38.66 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -3.26 Total: 5.73 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -1.91 Total: -11.69 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: -0.48 Total: -34.31 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.44 Total: -14.75 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 35 Polarization: -1.34 SS G_CDS: -2.33 Total: -3.67 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.35 -9.31 -38.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931750960.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.583 kcal (2) G-P(sol) polarization free energy of solvation -29.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds