Wall clock time and date at job start Mon Mar 30 2020 20:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46889 * 2 1 4 4 N 1.46890 * 109.47138 * 240.00001 * 2 1 3 5 5 C 1.50698 * 109.46942 * 119.99548 * 2 1 3 6 6 C 1.38291 * 119.92195 * 80.28341 * 5 2 1 7 7 C 1.38103 * 120.07426 * 180.27995 * 6 5 2 8 8 C 1.38918 * 119.92232 * 359.43747 * 7 6 5 9 9 N 1.39672 * 120.07035 * 180.26003 * 8 7 6 10 10 C 1.46507 * 119.99644 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.41329 * 35.14510 * 10 9 8 12 12 C 1.52964 * 109.41084 * 155.00058 * 10 9 8 13 13 C 1.53227 * 109.40170 * 183.70665 * 12 10 9 14 14 C 1.51265 * 108.53690 * 305.36954 * 13 12 10 15 15 C 1.37874 * 120.85263 * 231.32753 * 14 13 12 16 16 N 1.31514 * 119.99998 * 0.02562 * 15 14 13 17 17 Si 1.86799 * 120.00186 * 180.02562 * 15 14 13 18 18 H 1.48505 * 109.47429 * 60.00099 * 17 15 14 19 19 H 1.48504 * 109.47127 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47110 * 299.99859 * 17 15 14 21 21 C 1.51272 * 118.30135 * 51.35037 * 14 13 12 22 22 C 1.52951 * 109.41496 * 275.35361 * 10 9 8 23 23 C 1.38912 * 119.85053 * 0.28131 * 8 7 6 24 24 C 1.38103 * 119.92423 * 0.02562 * 23 8 7 25 25 H 1.08993 * 109.47226 * 60.00028 * 1 2 3 26 26 H 1.08995 * 109.47071 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47359 * 300.00093 * 1 2 3 28 28 H 1.00900 * 111.00504 * 60.00208 * 4 2 1 29 29 H 1.00902 * 110.99899 * 183.95509 * 4 2 1 30 30 H 1.08004 * 119.96541 * 359.97438 * 6 5 2 31 31 H 1.08002 * 120.04122 * 179.72165 * 7 6 5 32 32 H 0.97003 * 120.00570 * 0.02562 * 9 8 7 33 33 H 1.09001 * 109.48047 * 303.68636 * 12 10 9 34 34 H 1.08991 * 109.48321 * 63.72510 * 12 10 9 35 35 H 1.09001 * 109.62820 * 65.08588 * 13 12 10 36 36 H 1.09001 * 109.62284 * 185.46587 * 13 12 10 37 37 H 0.97004 * 120.00456 * 180.02562 * 16 15 14 38 38 H 1.09007 * 109.62575 * 68.36345 * 21 14 13 39 39 H 1.08998 * 109.62640 * 188.74666 * 21 14 13 40 40 H 1.09003 * 109.48371 * 296.27620 * 22 10 9 41 41 H 1.09000 * 109.48535 * 56.31442 * 22 10 9 42 42 H 1.08001 * 120.03541 * 180.02562 * 23 8 7 43 43 H 1.07998 * 119.95627 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1993 5 6 2.0323 -0.7103 1.2305 6 6 2.0715 -2.0923 1.2616 7 6 2.5258 -2.7466 2.3897 8 6 2.9546 -2.0146 3.4898 9 7 3.4198 -2.6731 4.6304 10 6 3.8722 -1.8996 5.7894 11 1 3.2612 -1.0022 5.8870 12 6 3.7328 -2.7494 7.0536 13 6 4.1181 -1.9100 8.2762 14 6 5.5038 -1.3453 8.0545 15 6 6.4891 -1.4950 9.0072 16 7 6.2301 -2.1359 10.1260 17 14 8.1920 -0.7874 8.7090 18 1 8.0919 0.6827 8.5244 19 1 9.0615 -1.0811 9.8765 20 1 8.7762 -1.4008 7.4893 21 6 5.7808 -0.6117 6.7609 22 6 5.3350 -1.4981 5.5932 23 6 2.9194 -0.6265 3.4530 24 6 2.4579 0.0213 2.3240 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6962 -0.2350 -2.0385 29 1 3.0262 -0.7625 -1.1908 30 1 1.7418 -2.6607 0.4044 31 1 2.5519 -3.8260 2.4151 32 1 3.4440 -3.6425 4.6549 33 1 2.7007 -3.0853 7.1538 34 1 4.3917 -3.6148 6.9844 35 1 3.4058 -1.0943 8.3996 36 1 4.1138 -2.5378 9.1673 37 1 6.9232 -2.2409 10.7965 38 1 5.2222 0.3242 6.7440 39 1 6.8475 -0.4031 6.6795 40 1 5.9561 -2.3932 5.5585 41 1 5.4385 -0.9472 4.6584 42 1 3.2525 -0.0544 4.3064 43 1 2.4307 1.1005 2.2947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167845573.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:51 Heat of formation + Delta-G solvation = 1.866884 kcal Electronic energy + Delta-G solvation = -20946.032812 eV Core-core repulsion = 17989.358659 eV Total energy + Delta-G solvation = -2956.674152 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.52191 -37.59780 -35.77376 -33.70711 -31.75033 -30.61955 -29.84073 -29.27770 -28.22341 -26.51381 -23.09009 -22.63113 -21.62890 -21.30463 -19.99877 -19.31194 -17.11116 -16.36157 -15.91699 -15.74159 -14.90470 -14.78514 -14.48601 -13.93722 -13.54887 -13.41785 -13.13262 -13.01005 -12.81805 -12.58418 -12.19078 -12.11836 -11.99819 -11.88479 -11.56092 -11.04953 -10.89316 -10.84699 -10.70946 -10.62828 -10.15842 -10.10141 -9.84275 -9.43466 -8.99598 -8.84953 -8.68164 -8.62489 -8.51377 -6.94230 -6.14445 -4.05693 1.73523 1.87848 3.26231 3.33199 3.34461 3.90706 4.12618 4.35178 4.41610 4.84743 5.08674 5.13476 5.27298 5.28888 5.35288 5.63669 5.64890 5.69763 5.75717 5.83602 5.93558 6.05911 6.11629 6.13668 6.33364 6.43889 6.53494 6.63158 6.66944 6.70893 6.80742 6.83794 6.85248 6.98471 7.04367 7.13621 7.23166 7.31303 7.35700 7.58432 7.66215 7.75207 7.85776 8.18549 8.33515 8.91626 9.50229 10.95234 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.035095 B = 0.003638 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.647286 B = 7694.398702 C = 8023.914215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.139 3.861 3 H 0.035 0.965 4 N -0.845 5.845 5 C -0.165 4.165 6 C -0.044 4.044 7 C -0.213 4.213 8 C 0.232 3.768 9 N -0.740 5.740 10 C 0.160 3.840 11 H 0.068 0.932 12 C -0.114 4.114 13 C 0.014 3.986 14 C -0.491 4.491 15 C 0.077 3.923 16 N -0.890 5.890 17 Si 0.891 3.109 18 H -0.274 1.274 19 H -0.292 1.292 20 H -0.274 1.274 21 C -0.009 4.009 22 C -0.118 4.118 23 C -0.201 4.201 24 C -0.066 4.066 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.337 0.663 29 H 0.343 0.657 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.393 0.607 33 H 0.035 0.965 34 H 0.053 0.947 35 H 0.005 0.995 36 H 0.060 0.940 37 H 0.265 0.735 38 H 0.018 0.982 39 H 0.025 0.975 40 H 0.052 0.948 41 H 0.035 0.965 42 H 0.124 0.876 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.844 2.134 -17.365 19.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.028 3.972 3 H 0.053 0.947 4 N -0.375 5.375 5 C -0.168 4.168 6 C -0.063 4.063 7 C -0.236 4.236 8 C 0.126 3.874 9 N -0.365 5.365 10 C 0.056 3.944 11 H 0.086 0.914 12 C -0.152 4.152 13 C -0.024 4.024 14 C -0.510 4.510 15 C -0.126 4.126 16 N -0.527 5.527 17 Si 0.719 3.281 18 H -0.200 1.200 19 H -0.218 1.218 20 H -0.200 1.200 21 C -0.047 4.047 22 C -0.158 4.158 23 C -0.224 4.224 24 C -0.085 4.085 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.149 0.851 29 H 0.155 0.845 30 H 0.140 0.860 31 H 0.132 0.868 32 H 0.227 0.773 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.023 0.977 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.036 0.964 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.142 0.858 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.126 1.570 -16.717 18.654 hybrid contribution 1.583 0.821 -0.257 1.801 sum -6.544 2.391 -16.975 18.349 Atomic orbital electron populations 1.21809 0.94345 1.02509 1.01082 1.20024 0.94975 0.93909 0.88275 0.94733 1.58753 1.16465 1.58468 1.03851 1.19340 1.07808 0.93888 0.95726 1.20622 0.95691 0.93606 0.96391 1.20593 1.09754 0.99057 0.94229 1.17971 0.90710 0.91888 0.86858 1.45297 1.69319 1.08191 1.13724 1.20977 0.94923 0.94415 0.84097 0.91367 1.21901 0.98306 0.99064 0.95958 1.19328 0.94539 0.94893 0.93650 1.20023 0.96419 1.34433 1.00136 1.24838 0.98370 0.94621 0.94770 1.69819 1.34157 1.41067 1.07677 0.86656 0.84162 0.79908 0.77347 1.19982 1.21837 1.20005 1.19603 0.96001 0.95160 0.93953 1.22004 0.95579 1.00168 0.98011 1.20703 1.08994 0.92741 0.99980 1.20695 0.96453 0.98805 0.92566 0.93235 0.91852 0.92196 0.85102 0.84459 0.85959 0.86826 0.77302 0.94634 0.92831 0.97665 0.92168 0.92477 0.96387 0.95650 0.92911 0.94589 0.85840 0.86992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.47 37.16 0.35 -0.95 16 2 C 0.14 1.40 3.57 -68.87 -0.25 1.16 16 3 H 0.03 0.34 8.00 -51.93 -0.42 -0.08 16 4 N -0.85 -7.45 8.47 -5.66 -0.05 -7.50 16 5 C -0.16 -2.08 4.89 -104.59 -0.51 -2.59 16 6 C -0.04 -0.58 9.31 -39.61 -0.37 -0.94 16 7 C -0.21 -2.99 9.90 -39.38 -0.39 -3.38 16 8 C 0.23 3.63 6.63 -83.78 -0.56 3.07 16 9 N -0.74 -11.96 5.25 -52.20 -0.27 -12.24 16 10 C 0.16 2.99 2.05 -67.97 -0.14 2.85 16 11 H 0.07 1.32 6.49 -51.93 -0.34 0.98 16 12 C -0.11 -2.32 5.40 -26.63 -0.14 -2.46 16 13 C 0.01 0.33 5.96 -27.49 -0.16 0.17 16 14 C -0.49 -12.69 5.51 -98.92 -0.55 -13.24 16 15 C 0.08 2.08 5.46 -17.82 -0.10 1.98 16 16 N -0.89 -25.31 12.73 55.43 0.71 -24.60 16 17 Si 0.89 21.15 26.80 -169.99 -4.56 16.59 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.01 -0.21 5.59 -27.48 -0.15 -0.36 16 22 C -0.12 -2.39 5.43 -26.64 -0.14 -2.54 16 23 C -0.20 -3.12 8.81 -39.38 -0.35 -3.47 16 24 C -0.07 -0.89 9.66 -39.61 -0.38 -1.28 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.34 2.31 9.04 -39.29 -0.36 1.96 16 29 H 0.34 2.94 8.99 -39.29 -0.35 2.59 16 30 H 0.12 1.48 7.70 -52.48 -0.40 1.08 16 31 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 32 H 0.39 5.80 8.61 -40.82 -0.35 5.44 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 36 H 0.06 1.60 7.08 -51.93 -0.37 1.23 16 37 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 39 H 0.03 0.58 5.17 -51.93 -0.27 0.31 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.04 0.68 7.72 -51.93 -0.40 0.28 16 42 H 0.12 2.00 6.15 -52.49 -0.32 1.68 16 43 H 0.11 1.31 8.03 -52.49 -0.42 0.89 16 LS Contribution 336.70 15.07 5.07 5.07 Total: -1.00 -27.49 336.70 -9.87 -37.36 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.94 Total: 7.30 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -3.84 Total: -21.98 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.38 Total: -44.34 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.56 Total: 16.59 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.49 -9.87 -37.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845573.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.227 kcal (2) G-P(sol) polarization free energy of solvation -27.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds