Wall clock time and date at job start Mon Mar 30 2020 20:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47074 * 2 1 4 4 C 1.53000 * 109.46988 * 240.00139 * 2 1 3 5 5 C 1.53002 * 109.47093 * 175.01959 * 4 2 1 6 6 C 1.50701 * 109.47175 * 184.98852 * 5 4 2 7 7 H 1.08006 * 119.99673 * 0.02562 * 6 5 4 8 8 C 1.37868 * 120.00284 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00072 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00269 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47246 * 90.00051 * 10 8 6 12 12 H 1.48505 * 109.47057 * 209.99652 * 10 8 6 13 13 H 1.48503 * 109.47136 * 329.99829 * 10 8 6 14 14 N 1.46893 * 109.47324 * 120.00075 * 2 1 3 15 15 C 1.47913 * 111.00004 * 50.71262 * 14 2 1 16 16 C 1.54601 * 102.62701 * 265.48873 * 15 14 2 17 17 H 1.08999 * 110.89281 * 92.87592 * 16 15 14 18 18 C 1.52992 * 110.73949 * 216.12967 * 16 15 14 19 19 N 1.46904 * 109.47125 * 290.74784 * 18 16 15 20 20 C 1.51570 * 102.83419 * 334.46771 * 16 15 14 21 21 C 1.37922 * 131.56193 * 196.34720 * 20 16 15 22 22 C 1.38309 * 120.08129 * 179.28350 * 21 20 16 23 23 C 1.38306 * 119.88049 * 359.97438 * 22 21 20 24 24 C 1.37902 * 120.26851 * 0.13148 * 23 22 21 25 25 C 1.38967 * 107.95598 * 15.93340 * 20 16 15 26 26 H 1.09004 * 109.47018 * 54.37631 * 1 2 3 27 27 H 1.09001 * 109.47041 * 294.38359 * 1 2 3 28 28 H 1.08993 * 109.47256 * 174.37580 * 1 2 3 29 29 H 1.08998 * 109.47040 * 295.02146 * 4 2 1 30 30 H 1.08998 * 109.47332 * 55.01789 * 4 2 1 31 31 H 1.08993 * 109.46949 * 304.98663 * 5 4 2 32 32 H 1.08999 * 109.46789 * 64.99115 * 5 4 2 33 33 H 0.97001 * 120.00763 * 179.97438 * 9 8 6 34 34 H 1.09004 * 110.77819 * 23.77236 * 15 14 2 35 35 H 1.08995 * 110.78237 * 147.20247 * 15 14 2 36 36 H 1.09000 * 109.47158 * 50.74711 * 18 16 15 37 37 H 1.09002 * 109.47078 * 170.74952 * 18 16 15 38 38 H 1.00903 * 110.99922 * 184.53156 * 19 18 16 39 39 H 1.00898 * 110.99996 * 308.48312 * 19 18 16 40 40 H 1.07999 * 119.95743 * 359.28024 * 21 20 16 41 41 H 1.07994 * 120.05978 * 180.02562 * 22 21 20 42 42 H 1.08006 * 119.86384 * 180.14176 * 23 22 21 43 43 H 1.08005 * 119.90507 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6137 -1.3135 6 6 4.0570 -1.2164 -2.6040 7 1 3.3526 -1.6340 -3.3082 8 6 5.4065 -1.2348 -2.8858 9 7 6.2643 -0.7259 -2.0286 10 14 6.0166 -1.9813 -4.4858 11 1 6.0646 -0.9316 -5.5352 12 1 7.3769 -2.5417 -4.2837 13 1 5.0932 -3.0641 -4.9107 14 7 2.0197 -0.6925 1.1994 15 6 1.3720 -2.0137 1.3502 16 6 0.1889 -1.7041 2.2960 17 1 -0.7136 -1.4775 1.7283 18 6 -0.0561 -2.8694 3.2566 19 7 -0.5822 -4.0187 2.5081 20 6 0.6711 -0.4801 3.0488 21 6 0.2307 0.1088 4.2157 22 6 0.8663 1.2347 4.7067 23 6 1.9451 1.7691 4.0258 24 6 2.3880 1.1854 2.8576 25 6 1.7503 0.0526 2.3541 26 1 -0.3633 0.5986 -0.8354 27 1 -0.3633 0.4243 0.9360 28 1 -0.3633 -1.0226 -0.1007 29 1 1.7512 -1.7714 -1.2058 30 1 1.6056 -0.2615 -2.1370 31 1 3.8573 0.4353 -1.2676 32 1 4.0026 -1.1502 -0.4717 33 1 7.2138 -0.7391 -2.2266 34 1 1.0127 -2.3802 0.3886 35 1 2.0553 -2.7294 1.8071 36 1 0.8819 -3.1474 3.7372 37 1 -0.7782 -2.5688 4.0157 38 1 -0.8217 -4.7763 3.1300 39 1 -1.3741 -3.7505 1.9432 40 1 -0.6116 -0.3098 4.7465 41 1 0.5215 1.6953 5.6206 42 1 2.4427 2.6470 4.4108 43 1 3.2312 1.6074 2.3308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484743.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:04:22 Heat of formation + Delta-G solvation = 31.487134 kcal Electronic energy + Delta-G solvation = -21636.587340 eV Core-core repulsion = 18681.197618 eV Total energy + Delta-G solvation = -2955.389722 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.09887 -37.23418 -35.62085 -33.63145 -32.22128 -31.23474 -29.27928 -28.70216 -28.42773 -25.16598 -24.37860 -22.68140 -21.85677 -20.87646 -20.43269 -19.02876 -17.11743 -16.16251 -16.12286 -15.38738 -15.32570 -15.04864 -14.46363 -14.39020 -13.99552 -13.67971 -13.19855 -13.06811 -12.61593 -12.36962 -12.29356 -12.17151 -11.96646 -11.75358 -11.58730 -11.23707 -11.15705 -10.83533 -10.79367 -10.55890 -10.41866 -10.23460 -9.62448 -9.37854 -9.05689 -8.85142 -8.78938 -8.69013 -8.21749 -7.51466 -5.87264 -3.88989 1.45073 1.52309 3.38350 3.44515 3.47905 3.80274 4.04338 4.29995 4.55143 4.76886 4.87011 4.93403 5.13146 5.14020 5.22168 5.39329 5.45768 5.48235 5.48519 5.53761 5.65871 5.68952 5.79729 5.89051 6.04836 6.09151 6.12152 6.17585 6.32091 6.39314 6.52321 6.57878 6.62565 6.73916 6.82088 6.93759 6.98254 7.25254 7.26464 7.41509 7.66676 7.85075 8.06142 8.21132 8.57135 9.19615 9.73883 11.23763 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.020058 B = 0.004751 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.614195 B = 5891.818321 C = 6641.777591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 H 0.079 0.921 4 C -0.103 4.103 5 C 0.030 3.970 6 C -0.519 4.519 7 H 0.051 0.949 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.887 3.113 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.477 5.477 15 C 0.069 3.931 16 C -0.078 4.078 17 H 0.087 0.913 18 C 0.077 3.923 19 N -0.848 5.848 20 C -0.142 4.142 21 C -0.091 4.091 22 C -0.146 4.146 23 C -0.103 4.103 24 C -0.116 4.116 25 C 0.115 3.885 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.010 0.990 32 H 0.029 0.971 33 H 0.258 0.742 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.025 0.975 38 H 0.341 0.659 39 H 0.339 0.661 40 H 0.112 0.888 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.359 0.693 13.504 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.019 4.019 3 H 0.097 0.903 4 C -0.141 4.141 5 C -0.007 4.007 6 C -0.558 4.558 7 H 0.070 0.930 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.192 5.192 15 C -0.058 4.058 16 C -0.098 4.098 17 H 0.105 0.895 18 C -0.054 4.054 19 N -0.377 5.377 20 C -0.145 4.145 21 C -0.109 4.109 22 C -0.165 4.165 23 C -0.121 4.121 24 C -0.136 4.136 25 C 0.018 3.982 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.028 0.972 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.043 0.957 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.130 0.870 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.871 0.613 13.024 19.036 hybrid contribution -1.185 -0.104 -0.174 1.202 sum -15.055 0.509 12.849 19.800 Atomic orbital electron populations 1.22698 0.98105 1.01911 1.01563 1.21995 0.91516 0.98489 0.89902 0.90253 1.21768 1.00969 0.98351 0.92974 1.18990 0.87960 0.96910 0.96822 1.21324 0.91888 1.38400 1.04165 0.93048 1.24992 0.97092 0.95696 0.96567 1.69979 1.02007 1.45997 1.35376 0.86681 0.78122 0.79450 0.84232 1.20838 1.21323 1.19976 1.60228 1.55760 1.02566 1.00693 1.23096 0.92614 0.90529 0.99515 1.21528 1.00334 0.91678 0.96237 0.89511 1.21715 0.99705 0.89844 0.94095 1.58665 1.40362 1.10064 1.28623 1.20931 0.96898 0.98911 0.97808 1.20287 0.99737 0.95943 0.94983 1.20926 0.97769 0.97160 1.00599 1.20893 0.96762 0.99624 0.94838 1.20621 1.00520 0.95779 0.96685 1.19706 0.92229 0.93625 0.92646 0.92207 0.92995 0.92250 0.93127 0.92835 0.97194 0.95288 0.93211 0.89084 0.89466 0.90647 0.95729 0.84691 0.84882 0.86988 0.86326 0.85950 0.85556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.64 7.45 37.16 0.28 -2.36 16 2 C 0.09 1.52 2.27 -67.72 -0.15 1.37 16 3 H 0.08 1.48 8.07 -51.93 -0.42 1.06 16 4 C -0.10 -2.14 4.59 -26.73 -0.12 -2.26 16 5 C 0.03 0.80 4.80 -27.88 -0.13 0.67 16 6 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 7 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -27.64 13.29 55.43 0.74 -26.90 16 10 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 14 N -0.48 -8.43 4.59 -161.49 -0.74 -9.17 16 15 C 0.07 1.08 5.66 -2.42 -0.01 1.06 16 16 C -0.08 -0.98 2.27 -90.51 -0.21 -1.18 16 17 H 0.09 1.04 6.01 -51.93 -0.31 0.73 16 18 C 0.08 0.82 6.10 -3.83 -0.02 0.80 16 19 N -0.85 -8.05 9.53 -10.37 -0.10 -8.15 16 20 C -0.14 -1.95 4.73 -104.04 -0.49 -2.44 16 21 C -0.09 -1.09 9.83 -39.67 -0.39 -1.48 16 22 C -0.15 -1.67 10.06 -39.53 -0.40 -2.06 16 23 C -0.10 -1.27 10.02 -39.68 -0.40 -1.67 16 24 C -0.12 -1.76 10.07 -39.27 -0.40 -2.15 16 25 C 0.12 1.85 5.01 -83.40 -0.42 1.43 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.72 6.08 -51.93 -0.32 0.41 16 28 H 0.06 0.80 5.77 -51.93 -0.30 0.50 16 29 H 0.05 1.04 6.44 -51.93 -0.33 0.70 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.09 1.45 5.32 -51.93 -0.28 1.17 16 35 H 0.09 1.45 7.82 -51.93 -0.41 1.04 16 36 H 0.08 0.89 8.01 -51.93 -0.42 0.48 16 37 H 0.02 0.23 8.01 -51.93 -0.42 -0.18 16 38 H 0.34 2.58 9.08 -39.29 -0.36 2.23 16 39 H 0.34 2.82 8.93 -39.29 -0.35 2.47 16 40 H 0.11 1.10 7.98 -52.49 -0.42 0.68 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 42 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 43 H 0.13 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 335.77 15.07 5.06 5.06 Total: -1.00 -31.68 335.77 -10.15 -41.83 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.81 Total: 4.25 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -3.28 Total: -24.07 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.10 Total: -44.22 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.68 -10.15 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484743.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.322 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds