Wall clock time and date at job start Mon Mar 30 2020 20:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47074 * 2 1 4 4 C 1.53000 * 109.46988 * 240.00139 * 2 1 3 5 5 C 1.53002 * 109.47093 * 175.01959 * 4 2 1 6 6 C 1.50701 * 109.47175 * 184.98852 * 5 4 2 7 7 H 1.08006 * 119.99673 * 0.02562 * 6 5 4 8 8 C 1.37868 * 120.00284 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00072 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00269 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47246 * 90.00051 * 10 8 6 12 12 H 1.48505 * 109.47057 * 209.99652 * 10 8 6 13 13 H 1.48503 * 109.47136 * 329.99829 * 10 8 6 14 14 N 1.46893 * 109.47324 * 120.00075 * 2 1 3 15 15 C 1.47913 * 111.00004 * 50.71262 * 14 2 1 16 16 C 1.54601 * 102.62701 * 265.48873 * 15 14 2 17 17 H 1.08999 * 110.89281 * 92.87592 * 16 15 14 18 18 C 1.52992 * 110.73949 * 216.12967 * 16 15 14 19 19 N 1.46904 * 109.47125 * 290.74784 * 18 16 15 20 20 C 1.51570 * 102.83419 * 334.46771 * 16 15 14 21 21 C 1.37922 * 131.56193 * 196.34720 * 20 16 15 22 22 C 1.38309 * 120.08129 * 179.28350 * 21 20 16 23 23 C 1.38306 * 119.88049 * 359.97438 * 22 21 20 24 24 C 1.37902 * 120.26851 * 0.13148 * 23 22 21 25 25 C 1.38967 * 107.95598 * 15.93340 * 20 16 15 26 26 H 1.09004 * 109.47018 * 54.37631 * 1 2 3 27 27 H 1.09001 * 109.47041 * 294.38359 * 1 2 3 28 28 H 1.08993 * 109.47256 * 174.37580 * 1 2 3 29 29 H 1.08998 * 109.47040 * 295.02146 * 4 2 1 30 30 H 1.08998 * 109.47332 * 55.01789 * 4 2 1 31 31 H 1.08993 * 109.46949 * 304.98663 * 5 4 2 32 32 H 1.08999 * 109.46789 * 64.99115 * 5 4 2 33 33 H 0.97001 * 120.00763 * 179.97438 * 9 8 6 34 34 H 1.09004 * 110.77819 * 23.77236 * 15 14 2 35 35 H 1.08995 * 110.78237 * 147.20247 * 15 14 2 36 36 H 1.09000 * 109.47158 * 50.74711 * 18 16 15 37 37 H 1.09002 * 109.47078 * 170.74952 * 18 16 15 38 38 H 1.00903 * 110.99922 * 184.53156 * 19 18 16 39 39 H 1.00898 * 110.99996 * 308.48312 * 19 18 16 40 40 H 1.07999 * 119.95743 * 359.28024 * 21 20 16 41 41 H 1.07994 * 120.05978 * 180.02562 * 22 21 20 42 42 H 1.08006 * 119.86384 * 180.14176 * 23 22 21 43 43 H 1.08005 * 119.90507 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6137 -1.3135 6 6 4.0570 -1.2164 -2.6040 7 1 3.3526 -1.6340 -3.3082 8 6 5.4065 -1.2348 -2.8858 9 7 6.2643 -0.7259 -2.0286 10 14 6.0166 -1.9813 -4.4858 11 1 6.0646 -0.9316 -5.5352 12 1 7.3769 -2.5417 -4.2837 13 1 5.0932 -3.0641 -4.9107 14 7 2.0197 -0.6925 1.1994 15 6 1.3720 -2.0137 1.3502 16 6 0.1889 -1.7041 2.2960 17 1 -0.7136 -1.4775 1.7283 18 6 -0.0561 -2.8694 3.2566 19 7 -0.5822 -4.0187 2.5081 20 6 0.6711 -0.4801 3.0488 21 6 0.2307 0.1088 4.2157 22 6 0.8663 1.2347 4.7067 23 6 1.9451 1.7691 4.0258 24 6 2.3880 1.1854 2.8576 25 6 1.7503 0.0526 2.3541 26 1 -0.3633 0.5986 -0.8354 27 1 -0.3633 0.4243 0.9360 28 1 -0.3633 -1.0226 -0.1007 29 1 1.7512 -1.7714 -1.2058 30 1 1.6056 -0.2615 -2.1370 31 1 3.8573 0.4353 -1.2676 32 1 4.0026 -1.1502 -0.4717 33 1 7.2138 -0.7391 -2.2266 34 1 1.0127 -2.3802 0.3886 35 1 2.0553 -2.7294 1.8071 36 1 0.8819 -3.1474 3.7372 37 1 -0.7782 -2.5688 4.0157 38 1 -0.8217 -4.7763 3.1300 39 1 -1.3741 -3.7505 1.9432 40 1 -0.6116 -0.3098 4.7465 41 1 0.5215 1.6953 5.6206 42 1 2.4427 2.6470 4.4108 43 1 3.2312 1.6074 2.3308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172484743.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:04:21 Heat of formation + Delta-G solvation = 10.800113 kcal Electronic energy + Delta-G solvation = -21637.484397 eV Core-core repulsion = 18681.197618 eV Total energy + Delta-G solvation = -2956.286778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.24179 -38.38253 -36.69426 -35.41531 -33.86990 -32.31896 -31.02101 -29.78740 -29.49522 -27.04845 -25.49590 -23.86097 -23.25971 -22.43102 -21.44958 -20.44870 -18.40104 -18.27735 -17.10827 -16.53654 -16.41639 -16.39208 -15.95908 -15.37808 -15.11977 -14.95488 -14.66455 -14.28405 -14.21901 -13.91445 -13.52703 -13.25764 -13.20208 -13.14753 -13.02744 -12.83004 -12.63666 -12.39215 -12.25336 -11.96417 -11.78738 -11.64429 -11.50538 -11.27958 -11.01734 -10.51211 -10.23584 -9.71074 -9.53316 -8.68632 -8.15084 -6.26602 0.43010 0.48736 1.39282 1.41483 1.52435 2.42867 2.73855 2.91070 3.17323 3.41627 3.75457 3.86525 3.91432 4.08938 4.17088 4.22736 4.24799 4.30914 4.34940 4.48710 4.58781 4.67060 4.69079 4.75339 4.80155 4.85771 4.93125 4.96190 5.02269 5.13997 5.23473 5.26305 5.38113 5.52143 5.55630 5.61007 5.63290 5.83829 5.94788 5.96518 6.17204 6.25019 6.30294 6.47151 6.65266 6.92747 7.42132 8.96612 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.020058 B = 0.004751 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.614195 B = 5891.818321 C = 6641.777591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.094 3.906 3 H 0.058 0.942 4 C -0.090 4.090 5 C 0.042 3.958 6 C -0.542 4.542 7 H 0.059 0.941 8 C -0.002 4.002 9 N -0.935 5.935 10 Si 0.964 3.036 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.262 1.262 14 N -0.509 5.509 15 C 0.069 3.931 16 C -0.064 4.064 17 H 0.099 0.901 18 C 0.085 3.915 19 N -0.858 5.858 20 C -0.143 4.143 21 C -0.088 4.088 22 C -0.136 4.136 23 C -0.103 4.103 24 C -0.143 4.143 25 C 0.081 3.919 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.059 0.941 31 H -0.023 1.023 32 H -0.006 1.006 33 H 0.261 0.739 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.353 0.647 39 H 0.348 0.652 40 H 0.144 0.856 41 H 0.155 0.845 42 H 0.145 0.855 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.876 0.240 14.288 22.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.012 4.012 3 H 0.076 0.924 4 C -0.128 4.128 5 C 0.004 3.996 6 C -0.580 4.580 7 H 0.077 0.923 8 C -0.199 4.199 9 N -0.575 5.575 10 Si 0.788 3.212 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.186 1.186 14 N -0.225 5.225 15 C -0.057 4.057 16 C -0.083 4.083 17 H 0.117 0.883 18 C -0.046 4.046 19 N -0.389 5.389 20 C -0.146 4.146 21 C -0.107 4.107 22 C -0.154 4.154 23 C -0.121 4.121 24 C -0.163 4.163 25 C -0.015 4.015 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.077 0.923 31 H -0.005 1.005 32 H 0.013 0.987 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.167 0.833 39 H 0.161 0.839 40 H 0.161 0.839 41 H 0.173 0.827 42 H 0.163 0.837 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.413 0.155 13.817 21.455 hybrid contribution -0.347 0.081 -0.339 0.491 sum -16.760 0.236 13.478 21.508 Atomic orbital electron populations 1.22531 0.94906 1.02919 1.02398 1.21747 0.93915 0.96707 0.88859 0.92365 1.21560 0.96790 0.99204 0.95205 1.18781 0.91921 0.93973 0.94877 1.21782 0.92592 1.38604 1.05064 0.92296 1.25989 0.97313 0.96004 1.00596 1.70138 1.02430 1.47212 1.37738 0.85475 0.77574 0.78896 0.79255 1.19709 1.20874 1.18629 1.60109 1.57389 1.03626 1.01408 1.23000 0.93509 0.89323 0.99882 1.21397 0.99012 0.92081 0.95827 0.88302 1.21573 0.99640 0.89431 0.93944 1.58599 1.41070 1.10133 1.29145 1.21080 0.96190 0.99024 0.98321 1.20677 1.00237 0.95695 0.94051 1.21368 0.96410 0.96478 1.01138 1.21172 0.97175 1.00072 0.93679 1.20718 1.00714 0.96620 0.98238 1.19836 0.94178 0.94670 0.92830 0.91218 0.92185 0.91086 0.92719 0.92256 1.00476 0.98722 0.93010 0.89733 0.91505 0.92281 0.93511 0.83345 0.83907 0.83864 0.82749 0.83739 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.68 7.45 71.98 0.54 -4.15 16 2 C 0.09 3.44 2.27 44.92 0.10 3.54 16 3 H 0.06 2.33 8.07 -2.39 -0.02 2.32 16 4 C -0.09 -3.88 4.59 30.60 0.14 -3.74 16 5 C 0.04 2.34 4.80 29.85 0.14 2.49 16 6 C -0.54 -32.38 9.11 25.60 0.23 -32.15 16 7 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 8 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 9 N -0.93 -59.89 13.29 21.44 0.28 -59.61 16 10 Si 0.96 46.02 29.54 68.60 2.03 48.05 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 14 N -0.51 -18.95 4.59 -664.84 -3.05 -22.01 16 15 C 0.07 2.22 5.66 86.65 0.49 2.71 16 16 C -0.06 -1.51 2.27 -10.72 -0.02 -1.53 16 17 H 0.10 2.12 6.01 -2.39 -0.01 2.10 16 18 C 0.09 1.64 6.10 86.30 0.53 2.17 16 19 N -0.86 -14.62 9.53 -186.72 -1.78 -16.40 16 20 C -0.14 -3.72 4.73 -19.49 -0.09 -3.81 16 21 C -0.09 -1.82 9.83 22.21 0.22 -1.60 16 22 C -0.14 -2.65 10.06 22.30 0.22 -2.42 16 23 C -0.10 -2.43 10.02 22.21 0.22 -2.20 16 24 C -0.14 -4.52 10.07 22.47 0.23 -4.29 16 25 C 0.08 2.68 5.01 38.29 0.19 2.87 16 26 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.06 1.58 6.08 -2.39 -0.01 1.57 16 28 H 0.07 1.80 5.77 -2.39 -0.01 1.78 16 29 H 0.05 2.30 6.44 -2.39 -0.02 2.28 16 30 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 31 H -0.02 -1.43 8.14 -2.39 -0.02 -1.45 16 32 H -0.01 -0.35 7.89 -2.39 -0.02 -0.37 16 33 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 34 H 0.08 2.73 5.32 -2.38 -0.01 2.72 16 35 H 0.07 2.35 7.82 -2.39 -0.02 2.33 16 36 H 0.06 1.34 8.01 -2.39 -0.02 1.32 16 37 H 0.05 0.71 8.01 -2.39 -0.02 0.69 16 38 H 0.35 4.59 9.08 -89.69 -0.81 3.78 16 39 H 0.35 4.93 8.93 -89.70 -0.80 4.13 16 40 H 0.14 2.08 7.98 -2.91 -0.02 2.06 16 41 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 42 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 43 H 0.10 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -71.88 335.77 0.48 -71.41 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -0.61 Total: 20.32 kcal Atomic # 6 Polarization: -45.37 SS G_CDS: 3.60 Total: -41.77 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -4.55 Total: -98.01 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -71.88 0.48 -71.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484743.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.208 kcal (2) G-P(sol) polarization free energy of solvation -71.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds