Wall clock time and date at job start Mon Mar 30 2020 20:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.46895 * 2 1 4 4 C 1.53002 * 109.47333 * 239.99583 * 2 1 3 5 5 C 1.53000 * 109.46854 * 149.70875 * 4 2 1 6 6 C 1.50704 * 109.46888 * 177.70312 * 5 4 2 7 7 H 1.07998 * 119.99848 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99725 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00010 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99573 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47426 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47281 * 120.00366 * 10 8 6 13 13 H 1.48504 * 109.47080 * 240.00159 * 10 8 6 14 14 N 1.46903 * 109.46806 * 120.00104 * 2 1 3 15 15 C 1.47916 * 110.99554 * 284.36825 * 14 2 1 16 16 C 1.54599 * 102.62535 * 265.47753 * 15 14 2 17 17 H 1.08999 * 110.89974 * 216.05537 * 16 15 14 18 18 C 1.53000 * 110.73742 * 92.80418 * 16 15 14 19 19 N 1.46897 * 109.47505 * 180.13352 * 18 16 15 20 20 C 1.51570 * 102.83782 * 334.46860 * 16 15 14 21 21 C 1.37919 * 131.56338 * 196.32966 * 20 16 15 22 22 C 1.38301 * 120.08343 * 179.28060 * 21 20 16 23 23 C 1.38305 * 119.88355 * 0.02562 * 22 21 20 24 24 C 1.37912 * 120.26183 * 0.14144 * 23 22 21 25 25 C 1.38972 * 107.95278 * 15.94361 * 20 16 15 26 26 H 1.08995 * 109.47328 * 306.59952 * 1 2 3 27 27 H 1.09002 * 109.46888 * 66.60345 * 1 2 3 28 28 H 1.09001 * 109.47326 * 186.59623 * 1 2 3 29 29 H 1.09004 * 109.46612 * 29.71176 * 4 2 1 30 30 H 1.09002 * 109.47324 * 269.71223 * 4 2 1 31 31 H 1.08996 * 109.47234 * 57.70741 * 5 4 2 32 32 H 1.08997 * 109.47046 * 297.69995 * 5 4 2 33 33 H 0.97003 * 119.99277 * 179.97438 * 9 8 6 34 34 H 1.08994 * 110.78027 * 23.77043 * 15 14 2 35 35 H 1.09005 * 110.77256 * 147.19763 * 15 14 2 36 36 H 1.09000 * 109.47229 * 300.13530 * 18 16 15 37 37 H 1.09003 * 109.47171 * 60.12884 * 18 16 15 38 38 H 1.00901 * 110.99966 * 56.04337 * 19 18 16 39 39 H 1.00900 * 110.99997 * 180.02562 * 19 18 16 40 40 H 1.08009 * 119.95322 * 359.29374 * 21 20 16 41 41 H 1.07998 * 120.05511 * 180.02562 * 22 21 20 42 42 H 1.07995 * 119.86850 * 180.16553 * 23 22 21 43 43 H 1.08005 * 119.89753 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.3844 -0.1240 -1.6698 6 6 3.9138 -0.8716 -2.8665 7 1 3.3478 -1.6905 -3.2853 8 6 5.1207 -0.5100 -3.4265 9 7 5.8101 0.4869 -2.9160 10 14 5.7766 -1.4362 -4.9102 11 1 4.8188 -2.5059 -5.2891 12 1 5.9426 -0.4955 -6.0473 13 1 7.0896 -2.0431 -4.5741 14 7 2.0196 -0.6925 1.1995 15 6 1.8731 0.1590 2.4000 16 6 3.2602 0.8332 2.5074 17 1 3.5529 0.9566 3.5500 18 6 3.2653 2.1805 1.7824 19 7 4.5948 2.7943 1.8989 20 6 4.1706 -0.1562 1.8077 21 6 5.5424 -0.2990 1.8123 22 6 6.1362 -1.3142 1.0846 23 6 5.3519 -2.1862 0.3515 24 6 3.9800 -2.0457 0.3408 25 6 3.3740 -1.0237 1.0700 26 1 -0.3634 0.6127 0.8250 27 1 -0.3633 0.4081 -0.9432 28 1 -0.3634 -1.0209 0.1180 29 1 1.3196 -0.6003 -2.0582 30 1 2.1660 -1.7817 -1.0305 31 1 4.0931 -0.2084 -0.8460 32 1 3.2504 0.9265 -1.9278 33 1 6.6594 0.7409 -3.3099 34 1 1.0913 0.9040 2.2526 35 1 1.6689 -0.4481 3.2820 36 1 3.0267 2.0277 0.7298 37 1 2.5209 2.8378 2.2318 38 1 5.3106 2.1761 1.5474 39 1 4.6238 3.6863 1.4280 40 1 6.1536 0.3829 2.3851 41 1 7.2104 -1.4258 1.0888 42 1 5.8157 -2.9805 -0.2145 43 1 3.3732 -2.7302 -0.2334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:04:24 Heat of formation + Delta-G solvation = 37.830906 kcal Electronic energy + Delta-G solvation = -22814.306033 eV Core-core repulsion = 19859.191397 eV Total energy + Delta-G solvation = -2955.114635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.91955 -36.61842 -35.49323 -33.60623 -32.32357 -30.47067 -29.77830 -28.58925 -27.67436 -25.23516 -23.89250 -22.26797 -21.78856 -20.86645 -20.08382 -19.27042 -16.44700 -16.11986 -15.77594 -15.27826 -15.18389 -15.03343 -14.48151 -13.90619 -13.72322 -13.45685 -12.91271 -12.71265 -12.47672 -12.44421 -11.98508 -11.92791 -11.74654 -11.44110 -11.37502 -11.23317 -11.01753 -10.90693 -10.73984 -10.47658 -10.35189 -10.03496 -9.60778 -9.24971 -8.96429 -8.85702 -8.44444 -8.27999 -8.01933 -7.25817 -5.95612 -3.95884 1.98616 2.10081 3.29887 3.38346 3.41869 4.06175 4.44408 4.47731 4.65693 4.88611 5.18765 5.31088 5.39578 5.41360 5.51228 5.55005 5.63800 5.65978 5.73585 5.82811 5.86155 5.97629 6.04898 6.12438 6.20242 6.24845 6.31151 6.40311 6.49031 6.54841 6.69519 6.88202 7.00680 7.07460 7.14716 7.20850 7.33301 7.38259 7.49390 7.64626 7.73849 7.87747 7.92754 8.06331 8.48265 9.10161 9.66656 11.15124 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016937 B = 0.007586 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.752115 B = 3690.079830 C = 4161.784433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.074 3.926 3 H 0.052 0.948 4 C -0.119 4.119 5 C 0.013 3.987 6 C -0.510 4.510 7 H 0.051 0.949 8 C 0.061 3.939 9 N -0.890 5.890 10 Si 0.881 3.119 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.285 1.285 14 N -0.486 5.486 15 C 0.053 3.947 16 C -0.072 4.072 17 H 0.088 0.912 18 C 0.069 3.931 19 N -0.851 5.851 20 C -0.142 4.142 21 C -0.094 4.094 22 C -0.127 4.127 23 C -0.089 4.089 24 C -0.074 4.074 25 C 0.102 3.898 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.001 0.999 33 H 0.256 0.744 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.067 0.933 38 H 0.347 0.653 39 H 0.338 0.662 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.952 0.117 10.587 11.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.032 4.032 3 H 0.069 0.931 4 C -0.157 4.157 5 C -0.024 4.024 6 C -0.548 4.548 7 H 0.069 0.931 8 C -0.140 4.140 9 N -0.530 5.530 10 Si 0.710 3.290 11 H -0.199 1.199 12 H -0.213 1.213 13 H -0.211 1.211 14 N -0.204 5.204 15 C -0.075 4.075 16 C -0.092 4.092 17 H 0.106 0.894 18 C -0.062 4.062 19 N -0.381 5.381 20 C -0.144 4.144 21 C -0.112 4.112 22 C -0.145 4.145 23 C -0.108 4.108 24 C -0.094 4.094 25 C 0.006 3.994 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.019 0.981 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.161 0.839 39 H 0.150 0.850 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.321 -0.227 11.371 12.557 hybrid contribution 0.998 0.277 -2.217 2.447 sum -4.323 0.050 9.154 10.124 Atomic orbital electron populations 1.21884 0.95099 1.01948 1.00820 1.22095 0.94501 0.96615 0.89960 0.93069 1.22018 1.00106 1.00107 0.93456 1.19449 0.90812 0.94953 0.97161 1.21185 1.04340 1.16112 1.13175 0.93117 1.24925 0.96978 0.95148 0.96904 1.69974 1.14195 1.27968 1.40831 0.86705 0.78916 0.80010 0.83382 1.19866 1.21255 1.21110 1.60426 1.15888 1.40565 1.03565 1.23147 0.95846 0.94972 0.93546 1.21290 0.94610 0.93341 0.99972 0.89382 1.21889 0.91617 0.94024 0.98662 1.58877 1.05572 1.08275 1.65341 1.20676 0.93978 0.97025 1.02726 1.20204 0.92801 0.98169 1.00044 1.20865 0.99120 0.96176 0.98382 1.20758 0.93164 0.99338 0.97517 1.20458 0.94375 0.96936 0.97615 1.19242 0.87894 0.95099 0.97169 0.93622 0.92298 0.92065 0.92978 0.91790 0.94160 0.98070 0.93403 0.90180 0.89707 0.94344 0.91424 0.83902 0.85046 0.86984 0.86759 0.86415 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.13 37.16 0.34 -1.66 16 2 C 0.07 1.28 2.13 -67.71 -0.14 1.14 16 3 H 0.05 0.96 4.90 -51.93 -0.25 0.70 16 4 C -0.12 -2.47 4.30 -26.73 -0.12 -2.59 16 5 C 0.01 0.33 3.92 -27.88 -0.11 0.22 16 6 C -0.51 -14.03 9.11 -34.44 -0.31 -14.34 16 7 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 10 Si 0.88 21.50 29.54 -169.99 -5.02 16.48 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 14 N -0.49 -8.16 4.88 -161.49 -0.79 -8.94 16 15 C 0.05 0.74 6.34 -2.42 -0.02 0.72 16 16 C -0.07 -1.08 3.29 -90.50 -0.30 -1.37 16 17 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 18 C 0.07 1.03 6.03 -3.83 -0.02 1.01 16 19 N -0.85 -12.63 9.62 -10.37 -0.10 -12.73 16 20 C -0.14 -2.47 4.98 -104.04 -0.52 -2.99 16 21 C -0.09 -1.62 8.87 -39.67 -0.35 -1.97 16 22 C -0.13 -2.27 10.06 -39.53 -0.40 -2.67 16 23 C -0.09 -1.69 9.76 -39.68 -0.39 -2.08 16 24 C -0.07 -1.45 6.70 -39.27 -0.26 -1.71 16 25 C 0.10 1.89 3.77 -83.40 -0.31 1.57 16 26 H 0.04 0.57 7.11 -51.93 -0.37 0.20 16 27 H 0.06 0.81 7.96 -51.93 -0.41 0.40 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 1.07 7.71 -51.93 -0.40 0.67 16 30 H 0.06 1.34 5.38 -51.93 -0.28 1.06 16 31 H 0.04 1.04 4.45 -51.93 -0.23 0.81 16 32 H 0.00 0.03 8.14 -51.93 -0.42 -0.40 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.08 0.99 6.48 -51.93 -0.34 0.66 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.04 0.68 5.63 -51.93 -0.29 0.39 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.35 5.66 6.80 -39.29 -0.27 5.39 16 39 H 0.34 4.58 9.08 -39.29 -0.36 4.22 16 40 H 0.11 1.73 7.61 -52.48 -0.40 1.33 16 41 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.12 2.08 8.06 -52.49 -0.42 1.65 16 43 H 0.12 2.34 6.45 -52.48 -0.34 2.00 16 LS Contribution 324.93 15.07 4.90 4.90 Total: -1.00 -29.53 324.93 -9.72 -39.26 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -6.44 Total: 11.39 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -3.01 Total: -25.11 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.15 Total: -46.92 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.53 -9.72 -39.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.089 kcal (2) G-P(sol) polarization free energy of solvation -29.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds