Wall clock time and date at job start Mon Mar 30 2020 20:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.46895 * 2 1 4 4 C 1.53002 * 109.47333 * 239.99583 * 2 1 3 5 5 C 1.53000 * 109.46854 * 149.70875 * 4 2 1 6 6 C 1.50704 * 109.46888 * 177.70312 * 5 4 2 7 7 H 1.07998 * 119.99848 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99725 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00010 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99573 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47426 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47281 * 120.00366 * 10 8 6 13 13 H 1.48504 * 109.47080 * 240.00159 * 10 8 6 14 14 N 1.46903 * 109.46806 * 120.00104 * 2 1 3 15 15 C 1.47916 * 110.99554 * 284.36825 * 14 2 1 16 16 C 1.54599 * 102.62535 * 265.47753 * 15 14 2 17 17 H 1.08999 * 110.89974 * 216.05537 * 16 15 14 18 18 C 1.53000 * 110.73742 * 92.80418 * 16 15 14 19 19 N 1.46897 * 109.47505 * 180.13352 * 18 16 15 20 20 C 1.51570 * 102.83782 * 334.46860 * 16 15 14 21 21 C 1.37919 * 131.56338 * 196.32966 * 20 16 15 22 22 C 1.38301 * 120.08343 * 179.28060 * 21 20 16 23 23 C 1.38305 * 119.88355 * 0.02562 * 22 21 20 24 24 C 1.37912 * 120.26183 * 0.14144 * 23 22 21 25 25 C 1.38972 * 107.95278 * 15.94361 * 20 16 15 26 26 H 1.08995 * 109.47328 * 306.59952 * 1 2 3 27 27 H 1.09002 * 109.46888 * 66.60345 * 1 2 3 28 28 H 1.09001 * 109.47326 * 186.59623 * 1 2 3 29 29 H 1.09004 * 109.46612 * 29.71176 * 4 2 1 30 30 H 1.09002 * 109.47324 * 269.71223 * 4 2 1 31 31 H 1.08996 * 109.47234 * 57.70741 * 5 4 2 32 32 H 1.08997 * 109.47046 * 297.69995 * 5 4 2 33 33 H 0.97003 * 119.99277 * 179.97438 * 9 8 6 34 34 H 1.08994 * 110.78027 * 23.77043 * 15 14 2 35 35 H 1.09005 * 110.77256 * 147.19763 * 15 14 2 36 36 H 1.09000 * 109.47229 * 300.13530 * 18 16 15 37 37 H 1.09003 * 109.47171 * 60.12884 * 18 16 15 38 38 H 1.00901 * 110.99966 * 56.04337 * 19 18 16 39 39 H 1.00900 * 110.99997 * 180.02562 * 19 18 16 40 40 H 1.08009 * 119.95322 * 359.29374 * 21 20 16 41 41 H 1.07998 * 120.05511 * 180.02562 * 22 21 20 42 42 H 1.07995 * 119.86850 * 180.16553 * 23 22 21 43 43 H 1.08005 * 119.89753 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.3844 -0.1240 -1.6698 6 6 3.9138 -0.8716 -2.8665 7 1 3.3478 -1.6905 -3.2853 8 6 5.1207 -0.5100 -3.4265 9 7 5.8101 0.4869 -2.9160 10 14 5.7766 -1.4362 -4.9102 11 1 4.8188 -2.5059 -5.2891 12 1 5.9426 -0.4955 -6.0473 13 1 7.0896 -2.0431 -4.5741 14 7 2.0196 -0.6925 1.1995 15 6 1.8731 0.1590 2.4000 16 6 3.2602 0.8332 2.5074 17 1 3.5529 0.9566 3.5500 18 6 3.2653 2.1805 1.7824 19 7 4.5948 2.7943 1.8989 20 6 4.1706 -0.1562 1.8077 21 6 5.5424 -0.2990 1.8123 22 6 6.1362 -1.3142 1.0846 23 6 5.3519 -2.1862 0.3515 24 6 3.9800 -2.0457 0.3408 25 6 3.3740 -1.0237 1.0700 26 1 -0.3634 0.6127 0.8250 27 1 -0.3633 0.4081 -0.9432 28 1 -0.3634 -1.0209 0.1180 29 1 1.3196 -0.6003 -2.0582 30 1 2.1660 -1.7817 -1.0305 31 1 4.0931 -0.2084 -0.8460 32 1 3.2504 0.9265 -1.9278 33 1 6.6594 0.7409 -3.3099 34 1 1.0913 0.9040 2.2526 35 1 1.6689 -0.4481 3.2820 36 1 3.0267 2.0277 0.7298 37 1 2.5209 2.8378 2.2318 38 1 5.3106 2.1761 1.5474 39 1 4.6238 3.6863 1.4280 40 1 6.1536 0.3829 2.3851 41 1 7.2104 -1.4258 1.0888 42 1 5.8157 -2.9805 -0.2145 43 1 3.3732 -2.7302 -0.2334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172484747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:04:24 Heat of formation + Delta-G solvation = 19.365966 kcal Electronic energy + Delta-G solvation = -22815.106732 eV Core-core repulsion = 19859.191397 eV Total energy + Delta-G solvation = -2955.915335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.25444 -37.99069 -36.91264 -35.28973 -34.02675 -31.84330 -31.45185 -29.92131 -29.04472 -26.99983 -25.24848 -23.61182 -23.34884 -22.54003 -21.40414 -20.69889 -18.37456 -17.63684 -17.07636 -16.61045 -16.56680 -16.53291 -16.28217 -15.27858 -15.05907 -14.87233 -14.41458 -14.24948 -14.08634 -13.89719 -13.32759 -13.23049 -13.13706 -13.01668 -12.93687 -12.81671 -12.74390 -12.33478 -12.15866 -12.10662 -11.79389 -11.61372 -11.29860 -11.20246 -10.87069 -10.49578 -10.15154 -9.69102 -9.43399 -8.65023 -8.12065 -6.19190 0.57308 0.67319 1.35371 1.37838 1.48432 2.41940 2.74273 3.06307 3.21365 3.48022 3.64791 3.98239 4.03483 4.11229 4.20937 4.25041 4.31629 4.35089 4.45900 4.55390 4.65908 4.70637 4.81830 4.83582 4.86222 4.91460 4.95386 5.02104 5.14228 5.22026 5.28395 5.34271 5.40841 5.57878 5.61647 5.65926 5.78215 5.83456 5.97985 5.99246 6.11256 6.20389 6.34617 6.44093 6.50706 6.95126 7.47006 8.98242 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016937 B = 0.007586 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.752115 B = 3690.079830 C = 4161.784433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.079 3.921 3 H 0.039 0.961 4 C -0.111 4.111 5 C 0.027 3.973 6 C -0.525 4.525 7 H 0.047 0.953 8 C 0.014 3.986 9 N -0.920 5.920 10 Si 0.944 3.056 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.279 1.279 14 N -0.487 5.487 15 C 0.054 3.946 16 C -0.067 4.067 17 H 0.104 0.896 18 C 0.072 3.928 19 N -0.847 5.847 20 C -0.147 4.147 21 C -0.099 4.099 22 C -0.138 4.138 23 C -0.109 4.109 24 C -0.094 4.094 25 C 0.088 3.912 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.033 0.967 32 H -0.037 1.037 33 H 0.258 0.742 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.007 0.993 37 H 0.093 0.907 38 H 0.337 0.663 39 H 0.344 0.656 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.120 0.880 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.844 0.397 11.644 13.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.026 4.026 3 H 0.057 0.943 4 C -0.149 4.149 5 C -0.010 4.010 6 C -0.563 4.563 7 H 0.065 0.935 8 C -0.184 4.184 9 N -0.560 5.560 10 Si 0.770 3.230 11 H -0.192 1.192 12 H -0.210 1.210 13 H -0.205 1.205 14 N -0.206 5.206 15 C -0.073 4.073 16 C -0.087 4.087 17 H 0.122 0.878 18 C -0.058 4.058 19 N -0.376 5.376 20 C -0.150 4.150 21 C -0.118 4.118 22 C -0.156 4.156 23 C -0.128 4.128 24 C -0.114 4.114 25 C -0.008 4.008 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.051 0.949 32 H -0.019 1.019 33 H 0.066 0.934 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.025 0.975 37 H 0.111 0.889 38 H 0.150 0.850 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.139 0.861 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.230 0.054 12.435 13.909 hybrid contribution 1.303 0.214 -2.536 2.859 sum -4.927 0.268 9.899 11.061 Atomic orbital electron populations 1.21819 0.92198 1.02810 1.02150 1.21972 0.96656 0.95243 0.88758 0.94278 1.21855 0.97770 0.99959 0.95320 1.19267 0.93033 0.92514 0.96191 1.21506 1.04619 1.16133 1.14042 0.93499 1.25660 0.97268 0.95927 0.99571 1.70089 1.14514 1.29233 1.42169 0.85724 0.78424 0.78896 0.79975 1.19170 1.20954 1.20481 1.60471 1.14824 1.41156 1.04141 1.23340 0.95849 0.95289 0.92827 1.21340 0.94519 0.92499 1.00294 0.87813 1.21898 0.92180 0.94739 0.97013 1.58928 1.05273 1.08358 1.65086 1.21064 0.94286 0.97249 1.02376 1.20491 0.93272 0.98122 0.99873 1.21151 1.00084 0.96166 0.98234 1.20943 0.93406 1.00114 0.98303 1.20513 0.94682 0.97713 0.98493 1.19425 0.89098 0.95059 0.97177 0.90996 0.92004 0.91718 0.93194 0.92159 0.94869 1.01863 0.93351 0.88042 0.87774 0.97477 0.88881 0.85000 0.84355 0.85122 0.85062 0.86149 0.87208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 9.13 71.98 0.66 -2.81 16 2 C 0.08 2.70 2.13 44.91 0.10 2.79 16 3 H 0.04 1.45 4.90 -2.39 -0.01 1.44 16 4 C -0.11 -4.69 4.30 30.60 0.13 -4.55 16 5 C 0.03 1.38 3.92 29.85 0.12 1.50 16 6 C -0.52 -29.50 9.11 25.60 0.23 -29.27 16 7 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 8 C 0.01 0.79 5.46 84.65 0.46 1.26 16 9 N -0.92 -54.61 13.29 21.45 0.28 -54.32 16 10 Si 0.94 44.46 29.54 68.60 2.03 46.49 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 14 N -0.49 -15.70 4.88 -664.82 -3.25 -18.94 16 15 C 0.05 1.35 6.34 86.65 0.55 1.90 16 16 C -0.07 -1.84 3.29 -10.72 -0.04 -1.88 16 17 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 18 C 0.07 2.05 6.03 86.30 0.52 2.57 16 19 N -0.85 -24.05 9.62 -186.72 -1.80 -25.84 16 20 C -0.15 -5.03 4.98 -19.49 -0.10 -5.13 16 21 C -0.10 -3.39 8.87 22.21 0.20 -3.19 16 22 C -0.14 -4.97 10.06 22.30 0.22 -4.74 16 23 C -0.11 -4.25 9.76 22.21 0.22 -4.03 16 24 C -0.09 -3.77 6.70 22.47 0.15 -3.62 16 25 C 0.09 3.26 3.77 38.29 0.14 3.41 16 26 H 0.07 1.52 7.11 -2.39 -0.02 1.50 16 27 H 0.06 1.59 7.96 -2.39 -0.02 1.57 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.05 2.07 7.71 -2.38 -0.02 2.05 16 30 H 0.06 2.57 5.38 -2.39 -0.01 2.56 16 31 H 0.03 1.77 4.45 -2.39 -0.01 1.76 16 32 H -0.04 -2.17 8.14 -2.39 -0.02 -2.19 16 33 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 34 H 0.10 2.11 6.48 -2.39 -0.02 2.10 16 35 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 36 H 0.01 0.25 5.63 -2.39 -0.01 0.24 16 37 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.34 10.78 6.80 -89.69 -0.61 10.17 16 39 H 0.34 8.97 9.08 -89.69 -0.81 8.15 16 40 H 0.13 3.88 7.61 -2.91 -0.02 3.86 16 41 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 42 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 43 H 0.11 4.47 6.45 -2.91 -0.02 4.45 16 Total: -1.00 -63.86 324.93 0.44 -63.43 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: -0.40 Total: 35.00 kcal Atomic # 6 Polarization: -49.38 SS G_CDS: 3.57 Total: -45.81 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -4.76 Total: -99.11 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -63.86 0.44 -63.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.794 kcal (2) G-P(sol) polarization free energy of solvation -63.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds