Wall clock time and date at job start Mon Mar 30 2020 20:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47312 * 2 1 4 4 C 1.53005 * 109.46860 * 120.00310 * 2 1 3 5 5 C 1.53004 * 109.46861 * 185.00049 * 4 2 1 6 6 C 1.50698 * 109.46807 * 179.97438 * 5 4 2 7 7 H 1.08005 * 120.00187 * 359.72442 * 6 5 4 8 8 C 1.37878 * 119.99994 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99756 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00118 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47149 * 59.99883 * 10 8 6 12 12 H 1.48503 * 109.47028 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47054 * 299.99577 * 10 8 6 14 14 N 1.46903 * 109.47151 * 239.99870 * 2 1 3 15 15 C 1.46899 * 110.99775 * 82.58514 * 14 2 1 16 16 C 1.50696 * 115.55244 * 62.91662 * 15 14 2 17 17 C 1.38287 * 119.92660 * 205.68422 * 16 15 14 18 18 C 1.38110 * 120.07434 * 179.72709 * 17 16 15 19 19 C 1.38908 * 119.92263 * 0.53744 * 18 17 16 20 20 N 1.39674 * 120.07213 * 179.70719 * 19 18 17 21 21 C 1.38914 * 119.85397 * 359.73129 * 19 18 17 22 22 C 1.38105 * 119.92074 * 0.02562 * 21 19 18 23 23 C 1.52999 * 117.49997 * 277.24403 * 15 14 2 24 24 C 1.53001 * 117.49810 * 208.58625 * 15 14 2 25 25 H 1.08996 * 109.47612 * 300.00021 * 1 2 3 26 26 H 1.09001 * 109.46814 * 60.00176 * 1 2 3 27 27 H 1.09004 * 109.47252 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47333 * 64.99908 * 4 2 1 29 29 H 1.08993 * 109.46724 * 304.99612 * 4 2 1 30 30 H 1.08996 * 109.47261 * 59.99815 * 5 4 2 31 31 H 1.08998 * 109.46892 * 299.99774 * 5 4 2 32 32 H 0.96996 * 119.99836 * 180.02562 * 9 8 6 33 33 H 1.00900 * 111.00173 * 206.53676 * 14 2 1 34 34 H 1.07996 * 119.96028 * 359.96974 * 17 16 15 35 35 H 1.07997 * 120.03612 * 180.27317 * 18 17 16 36 36 H 0.97002 * 120.00062 * 180.02562 * 20 19 18 37 37 H 0.97002 * 120.00157 * 0.02799 * 20 19 18 38 38 H 1.07997 * 120.03633 * 179.97438 * 21 19 18 39 39 H 1.08008 * 119.95909 * 180.02562 * 22 21 19 40 40 H 1.09007 * 117.49821 * 359.97438 * 23 15 14 41 41 H 1.08995 * 117.49947 * 145.01945 * 23 15 14 42 42 H 1.09002 * 117.50060 * 214.97932 * 24 15 14 43 43 H 1.08999 * 117.49561 * 359.97322 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2493 5 6 3.5648 -0.6134 1.3137 6 6 4.0670 -1.3233 2.5445 7 1 3.3681 -1.7997 3.2161 8 6 5.4182 -1.3594 2.8164 9 7 6.2688 -0.7747 2.0014 10 14 6.0408 -2.2400 4.3416 11 1 5.6485 -3.6710 4.2818 12 1 7.5207 -2.1341 4.4050 13 1 5.4481 -1.6144 5.5510 14 7 2.0196 -0.6925 -1.1994 15 6 2.0282 0.2076 -2.3603 16 6 2.9441 1.3994 -2.2520 17 6 2.6714 2.5469 -2.9739 18 6 3.5056 3.6429 -2.8726 19 6 4.6258 3.5877 -2.0530 20 7 5.4750 4.6921 -1.9529 21 6 4.8999 2.4314 -1.3335 22 6 4.0587 1.3409 -1.4356 23 6 0.7130 0.3941 -3.1194 24 6 1.8481 -0.4215 -3.7433 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.7515 -1.7716 1.2056 29 1 1.6053 -0.2618 2.1369 30 1 3.8531 0.4368 1.3574 31 1 3.9994 -1.0729 0.4260 32 1 7.2194 -0.8004 2.1925 33 1 2.9347 -1.0870 -1.0410 34 1 1.8029 2.5874 -3.6145 35 1 3.2896 4.5403 -3.4332 36 1 6.2571 4.6523 -1.3806 37 1 5.2825 5.4990 -2.4558 38 1 5.7703 2.3851 -0.6958 39 1 4.2711 0.4417 -0.8762 40 1 -0.1587 -0.1514 -2.7576 41 1 0.5103 1.3787 -3.5407 42 1 2.3917 0.0269 -4.5749 43 1 1.7236 -1.5033 -3.7918 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:05:02 Heat of formation + Delta-G solvation = 36.803719 kcal Electronic energy + Delta-G solvation = -21564.575436 eV Core-core repulsion = 18609.416258 eV Total energy + Delta-G solvation = -2955.159177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.77529 -37.69863 -35.45471 -33.77995 -32.81135 -30.67199 -29.81112 -28.90843 -27.97613 -25.01559 -22.71050 -22.36767 -21.96556 -21.43127 -19.65956 -19.05328 -17.24346 -16.63910 -16.28760 -15.88401 -15.04843 -14.74302 -14.47547 -14.09877 -13.67297 -13.27910 -13.01042 -12.93609 -12.79057 -12.46691 -12.21498 -11.83158 -11.82826 -11.27976 -11.15126 -11.10364 -10.94379 -10.85074 -10.56498 -10.46374 -10.42155 -9.92198 -9.78277 -9.40142 -9.21115 -8.97195 -8.56306 -8.33140 -8.01437 -7.16477 -5.99312 -4.00447 1.78579 1.85903 3.34192 3.38280 3.41352 3.94351 4.02341 4.36687 4.47257 4.51632 4.94003 5.12773 5.26221 5.32915 5.36777 5.52765 5.65035 5.71713 5.79277 5.88743 5.89674 5.98673 6.07726 6.12117 6.14797 6.31285 6.39509 6.43602 6.48437 6.58122 6.60821 6.63846 6.79892 6.99986 7.07833 7.13054 7.20572 7.63558 7.64111 7.68939 7.84363 7.88504 7.95471 8.01054 8.45127 9.05192 9.63281 11.11561 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.005960 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.089409 B = 4697.244746 C = 6098.791356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.085 3.915 3 H 0.044 0.956 4 C -0.116 4.116 5 C 0.022 3.978 6 C -0.519 4.519 7 H 0.053 0.947 8 C 0.058 3.942 9 N -0.894 5.894 10 Si 0.890 3.110 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.647 5.647 15 C 0.088 3.912 16 C -0.127 4.127 17 C -0.074 4.074 18 C -0.204 4.204 19 C 0.206 3.794 20 N -0.883 5.883 21 C -0.182 4.182 22 C -0.056 4.056 23 C -0.165 4.165 24 C -0.158 4.158 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.015 0.985 31 H 0.015 0.985 32 H 0.260 0.740 33 H 0.354 0.646 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.397 0.603 37 H 0.393 0.607 38 H 0.123 0.877 39 H 0.136 0.864 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.420 8.216 -11.458 15.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.025 4.025 3 H 0.062 0.938 4 C -0.154 4.154 5 C -0.015 4.015 6 C -0.557 4.557 7 H 0.072 0.928 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.718 3.282 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.281 5.281 15 C -0.005 4.005 16 C -0.131 4.131 17 C -0.093 4.093 18 C -0.227 4.227 19 C 0.102 3.898 20 N -0.422 5.422 21 C -0.205 4.205 22 C -0.075 4.075 23 C -0.202 4.202 24 C -0.196 4.196 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.177 0.823 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.225 0.775 37 H 0.220 0.780 38 H 0.141 0.859 39 H 0.153 0.847 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.864 7.902 -11.605 15.628 hybrid contribution 1.535 0.483 1.188 2.000 sum -5.328 8.384 -10.417 14.395 Atomic orbital electron populations 1.21855 0.95949 1.01408 1.00414 1.21568 0.94399 0.96662 0.89826 0.93763 1.21850 0.99719 0.99389 0.94470 1.19164 0.88778 0.96888 0.96647 1.21207 0.91893 1.34369 1.08227 0.92825 1.24989 0.97077 0.95597 0.96603 1.69936 1.02309 1.44092 1.36994 0.86694 0.77528 0.80319 0.83661 1.20262 1.21384 1.20371 1.60531 1.32594 1.31975 1.02995 1.19939 0.97032 0.92779 0.90702 1.19436 0.97370 0.95194 1.01081 1.20658 0.98205 0.92194 0.98280 1.20410 0.97359 0.99856 1.05054 1.17818 0.90216 0.87729 0.93993 1.42428 1.30184 1.14963 1.54654 1.20672 1.02900 0.92963 1.03931 1.21103 0.92194 0.98767 0.95422 1.23149 0.92731 1.01012 1.03297 1.23085 1.01917 0.99899 0.94659 0.93331 0.93186 0.92686 0.92590 0.92826 0.96629 0.96723 0.93080 0.82321 0.86523 0.86929 0.77500 0.77985 0.85881 0.84659 0.88191 0.89132 0.89138 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.21 37.16 0.34 -1.80 16 2 C 0.08 1.52 2.32 -67.71 -0.16 1.37 16 3 H 0.04 0.87 6.46 -51.93 -0.34 0.53 16 4 C -0.12 -2.43 4.76 -26.73 -0.13 -2.56 16 5 C 0.02 0.55 3.79 -27.88 -0.11 0.45 16 6 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 7 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 10 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 14 N -0.65 -11.19 6.14 -94.21 -0.58 -11.77 16 15 C 0.09 1.35 2.14 -132.76 -0.28 1.07 16 16 C -0.13 -2.05 4.70 -104.59 -0.49 -2.54 16 17 C -0.07 -1.06 9.29 -39.61 -0.37 -1.43 16 18 C -0.20 -2.79 9.90 -39.38 -0.39 -3.18 16 19 C 0.21 3.00 6.75 -83.79 -0.57 2.43 16 20 N -0.88 -9.77 9.09 32.41 0.29 -9.48 16 21 C -0.18 -3.14 9.90 -39.38 -0.39 -3.53 16 22 C -0.06 -1.03 8.52 -39.61 -0.34 -1.36 16 23 C -0.16 -2.10 8.47 -26.70 -0.23 -2.33 16 24 C -0.16 -2.07 10.09 -26.69 -0.27 -2.34 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.71 5.85 -51.93 -0.30 0.41 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.02 0.42 7.98 -51.93 -0.41 0.00 16 31 H 0.01 0.38 5.56 -51.93 -0.29 0.09 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.35 6.78 5.50 -39.29 -0.22 6.56 16 34 H 0.12 1.40 6.01 -52.49 -0.32 1.09 16 35 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.40 4.00 8.84 -40.82 -0.36 3.64 16 37 H 0.39 3.37 8.84 -40.82 -0.36 3.00 16 38 H 0.12 2.17 8.06 -52.49 -0.42 1.74 16 39 H 0.14 2.81 4.62 -52.48 -0.24 2.56 16 40 H 0.10 1.28 7.12 -51.92 -0.37 0.91 16 41 H 0.09 1.03 6.17 -51.93 -0.32 0.71 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 337.77 15.07 5.09 5.09 Total: -1.00 -29.51 337.77 -9.71 -39.22 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -6.45 Total: 14.70 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: -3.78 Total: -29.04 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.45 Total: -46.58 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.51 -9.71 -39.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.027 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds