Wall clock time and date at job start Mon Mar 30 2020 20:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46809 * 2 1 4 4 C 1.52997 * 109.47026 * 119.99678 * 2 1 3 5 5 C 1.53001 * 109.47216 * 184.99964 * 4 2 1 6 6 C 1.50697 * 109.47298 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00151 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00157 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99833 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00130 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46920 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.46931 * 119.99949 * 10 8 6 13 13 H 1.48501 * 109.47376 * 240.00372 * 10 8 6 14 14 N 1.46897 * 109.47402 * 239.99765 * 2 1 3 15 15 C 1.46902 * 111.00131 * 108.59094 * 14 2 1 16 16 H 1.08999 * 109.29946 * 39.93825 * 15 14 2 17 17 C 1.52798 * 109.30601 * 280.54922 * 15 14 2 18 18 C 1.53317 * 108.51399 * 188.62186 * 17 15 14 19 19 C 1.52834 * 108.46074 * 69.81191 * 18 17 15 20 20 C 1.50342 * 110.45344 * 309.14519 * 19 18 17 21 21 C 1.39072 * 118.69293 * 197.27718 * 20 19 18 22 22 C 1.38051 * 119.32503 * 180.47624 * 21 20 19 23 23 N 1.31884 * 120.59031 * 359.97438 * 22 21 20 24 24 C 1.31669 * 121.64555 * 359.89662 * 23 22 21 25 25 C 1.37841 * 122.81278 * 17.56627 * 20 19 18 26 26 H 1.09007 * 109.47089 * 305.48770 * 1 2 3 27 27 H 1.08998 * 109.47203 * 185.48301 * 1 2 3 28 28 H 1.09002 * 109.46817 * 65.48419 * 1 2 3 29 29 H 1.09000 * 109.47113 * 304.99966 * 4 2 1 30 30 H 1.08996 * 109.47310 * 64.99690 * 4 2 1 31 31 H 1.08990 * 109.47107 * 300.00004 * 5 4 2 32 32 H 1.08999 * 109.46984 * 60.00132 * 5 4 2 33 33 H 0.97004 * 119.99786 * 179.97438 * 9 8 6 34 34 H 1.00890 * 110.99992 * 232.55021 * 14 2 1 35 35 H 1.09004 * 109.62761 * 308.32779 * 17 15 14 36 36 H 1.08995 * 109.62917 * 68.91080 * 17 15 14 37 37 H 1.08997 * 109.64888 * 310.11761 * 18 17 15 38 38 H 1.09005 * 109.80415 * 189.59390 * 18 17 15 39 39 H 1.08994 * 109.30220 * 188.84079 * 19 18 17 40 40 H 1.09000 * 109.14199 * 69.34225 * 19 18 17 41 41 H 1.08002 * 120.33537 * 0.51367 * 21 20 19 42 42 H 1.08003 * 119.70922 * 180.02562 * 22 21 20 43 43 H 1.07998 * 119.49275 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 6 4.0671 -1.3230 2.5445 7 1 3.3686 -1.8035 3.2137 8 6 5.4184 -1.3600 2.8159 9 7 6.2690 -0.7754 2.0008 10 14 6.0410 -2.2404 4.3412 11 1 4.8910 -2.8119 5.0869 12 1 6.9627 -3.3335 3.9402 13 1 6.7643 -1.2763 5.2088 14 7 2.0197 -0.6925 -1.1994 15 6 2.6075 0.2579 -2.1530 16 1 3.1812 1.0071 -1.6076 17 6 1.4890 0.9510 -2.9297 18 6 2.1185 1.7720 -4.0612 19 6 2.6825 0.8070 -5.1035 20 6 3.5583 -0.2231 -4.4462 21 6 4.4405 -0.9520 -5.2366 22 6 5.2437 -1.9081 -4.6480 23 7 5.1797 -2.1319 -3.3499 24 6 4.3578 -1.4583 -2.5725 25 6 3.5211 -0.4813 -3.0926 26 1 -0.3633 0.5966 0.8368 27 1 -0.3633 -1.0229 0.0982 28 1 -0.3633 0.4264 -0.9350 29 1 1.6053 -0.2616 2.1370 30 1 1.7516 -1.7714 1.2057 31 1 3.9994 -1.0728 0.4261 32 1 3.8532 0.4370 1.3574 33 1 7.2196 -0.8011 2.1919 34 1 2.6802 -1.4150 -0.9553 35 1 0.8172 0.2027 -3.3503 36 1 0.9347 1.6112 -2.2627 37 1 2.9223 2.3905 -3.6618 38 1 1.3618 2.4072 -4.5217 39 1 3.2688 1.3663 -5.8324 40 1 1.8576 0.3074 -5.6114 41 1 4.4969 -0.7714 -6.2999 42 1 5.9313 -2.4775 -5.2559 43 1 4.3343 -1.6697 -1.5136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:05:33 Heat of formation + Delta-G solvation = 8.195885 kcal Electronic energy + Delta-G solvation = -21582.978647 eV Core-core repulsion = 18626.578941 eV Total energy + Delta-G solvation = -2956.399706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.63941 -37.75455 -36.06433 -33.43315 -32.43145 -31.20219 -30.14956 -29.05950 -27.65975 -25.00987 -23.87281 -23.20541 -22.08070 -21.16906 -19.79352 -19.45240 -16.84101 -16.46372 -16.11766 -15.57140 -15.23400 -14.57779 -14.49310 -14.19643 -13.99393 -13.57368 -13.43171 -12.90104 -12.72059 -12.48835 -12.37230 -12.21899 -11.90532 -11.64706 -11.45970 -11.18384 -11.05549 -10.94842 -10.89002 -10.61817 -10.46102 -10.06449 -9.84264 -9.36082 -9.25905 -9.11516 -9.07791 -8.82963 -8.36930 -7.96386 -6.01100 -4.03674 1.29379 1.42648 3.31518 3.39397 3.43109 3.96653 4.45306 4.46023 4.53986 4.61505 4.76378 4.94850 5.05870 5.10098 5.23277 5.34554 5.39092 5.43466 5.52133 5.57354 5.73334 5.74187 5.77513 5.82791 5.92470 5.95009 6.02570 6.11201 6.17875 6.24439 6.31634 6.38651 6.49329 6.53898 6.55443 6.85105 6.90751 7.04976 7.45721 7.60015 7.75377 7.81490 7.97003 8.23544 8.40171 9.02651 9.61174 11.09760 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.005457 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.868155 B = 5129.950722 C = 6377.493958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.080 3.920 3 H 0.051 0.949 4 C -0.127 4.127 5 C 0.021 3.979 6 C -0.521 4.521 7 H 0.055 0.945 8 C 0.059 3.941 9 N -0.892 5.892 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.285 1.285 14 N -0.680 5.680 15 C 0.132 3.868 16 H 0.059 0.941 17 C -0.106 4.106 18 C -0.121 4.121 19 C -0.080 4.080 20 C -0.033 4.033 21 C -0.182 4.182 22 C 0.089 3.911 23 N -0.481 5.481 24 C 0.116 3.884 25 C -0.121 4.121 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.012 0.988 32 H 0.012 0.988 33 H 0.260 0.740 34 H 0.350 0.650 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.130 0.870 42 H 0.151 0.849 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.339 4.087 -15.099 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.029 4.029 3 H 0.069 0.931 4 C -0.165 4.165 5 C -0.016 4.016 6 C -0.560 4.560 7 H 0.074 0.926 8 C -0.143 4.143 9 N -0.531 5.531 10 Si 0.718 3.282 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 N -0.316 5.316 15 C 0.022 3.978 16 H 0.077 0.923 17 C -0.144 4.144 18 C -0.159 4.159 19 C -0.117 4.117 20 C -0.041 4.041 21 C -0.202 4.202 22 C -0.067 4.067 23 N -0.189 5.189 24 C -0.043 4.043 25 C -0.124 4.124 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.173 0.827 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.147 0.853 42 H 0.168 0.832 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.213 3.450 -15.054 17.492 hybrid contribution 0.936 0.329 0.906 1.343 sum -7.277 3.779 -14.148 16.352 Atomic orbital electron populations 1.21823 0.95641 1.01466 1.00308 1.21720 0.94712 0.96812 0.89679 0.93053 1.22065 0.99843 0.99376 0.95191 1.19139 0.88601 0.96941 0.96891 1.21242 0.91957 1.34423 1.08330 0.92626 1.25013 0.97088 0.95536 0.96655 1.69960 1.02361 1.43935 1.36883 0.86564 0.78887 0.79522 0.83216 1.19745 1.20961 1.21082 1.60812 1.42921 1.13655 1.14167 1.20294 0.92545 0.93068 0.91884 0.92327 1.21604 0.97458 0.98727 0.96604 1.21596 1.00493 0.97583 0.96260 1.20463 0.98165 0.95208 0.97866 1.19802 0.95531 0.96051 0.92721 1.22039 0.98642 0.98799 1.00719 1.22698 0.97133 0.95474 0.91396 1.67694 1.19818 1.25813 1.05556 1.23038 0.89942 0.90849 1.00469 1.20559 0.98963 0.98685 0.94161 0.93307 0.92764 0.93213 0.92522 0.92590 0.97031 0.96918 0.93039 0.82656 0.90872 0.91411 0.91616 0.91206 0.90602 0.90194 0.85253 0.83177 0.82130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 9.52 37.16 0.35 -1.54 16 2 C 0.08 1.34 2.46 -67.72 -0.17 1.17 16 3 H 0.05 0.88 7.24 -51.92 -0.38 0.51 16 4 C -0.13 -2.54 4.54 -26.73 -0.12 -2.66 16 5 C 0.02 0.53 4.83 -27.88 -0.13 0.39 16 6 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 7 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 10 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 N -0.68 -11.14 6.11 -101.18 -0.62 -11.76 16 15 C 0.13 2.00 2.43 -69.08 -0.17 1.83 16 16 H 0.06 0.99 7.53 -51.93 -0.39 0.60 16 17 C -0.11 -1.28 4.94 -26.67 -0.13 -1.41 16 18 C -0.12 -1.22 5.98 -26.65 -0.16 -1.38 16 19 C -0.08 -0.80 5.72 -28.14 -0.16 -0.96 16 20 C -0.03 -0.43 5.74 -104.63 -0.60 -1.03 16 21 C -0.18 -2.23 9.74 -39.34 -0.38 -2.61 16 22 C 0.09 1.24 11.19 -17.60 -0.20 1.04 16 23 N -0.48 -8.51 10.36 -13.19 -0.14 -8.65 16 24 C 0.12 2.07 10.13 -17.43 -0.18 1.90 16 25 C -0.12 -1.89 5.54 -104.69 -0.58 -2.47 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.64 7.09 -51.93 -0.37 0.27 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.01 0.30 5.69 -51.93 -0.30 0.00 16 32 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.35 6.39 4.33 -39.30 -0.17 6.22 16 35 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 36 H 0.07 0.80 7.42 -51.93 -0.39 0.41 16 37 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.15 1.64 8.06 -52.48 -0.42 1.21 16 43 H 0.16 3.17 5.37 -52.49 -0.28 2.89 16 LS Contribution 336.11 15.07 5.07 5.07 Total: -1.00 -30.49 336.11 -9.89 -40.38 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.88 Total: 5.19 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -3.04 Total: -21.05 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.02 Total: -46.34 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.49 -9.89 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.576 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds