Wall clock time and date at job start Mon Mar 30 2020 20:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76208 * 99.99858 * 2 1 4 4 N 1.32555 * 119.18285 * 359.97438 * 3 2 1 5 5 C 1.32472 * 120.92335 * 180.02562 * 4 3 2 6 6 C 1.38146 * 119.29841 * 0.02562 * 5 4 3 7 7 C 1.39660 * 118.49961 * 0.25218 * 6 5 4 8 8 N 1.38529 * 120.47751 * 179.71957 * 7 6 5 9 9 S 1.65608 * 119.99817 * 179.97438 * 8 7 6 10 10 O 1.42092 * 106.40407 * 178.54383 * 9 8 7 11 11 O 1.42100 * 106.39704 * 311.46414 * 9 8 7 12 12 C 1.76198 * 107.21541 * 65.00167 * 9 8 7 13 13 H 1.07997 * 119.99976 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99714 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99961 * 359.97438 * 14 12 9 16 16 Si 1.86804 * 120.00005 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.46637 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47086 * 119.99399 * 16 14 12 19 19 H 1.48499 * 109.46907 * 239.99430 * 16 14 12 20 20 N 1.32505 * 119.17997 * 180.02562 * 3 2 1 21 21 H 1.08998 * 109.47028 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46870 * 300.00073 * 1 2 3 23 23 H 1.09001 * 109.47189 * 60.00171 * 1 2 3 24 24 H 1.08003 * 120.34873 * 180.02562 * 5 4 3 25 25 H 1.08002 * 120.74637 * 179.97438 * 6 5 4 26 26 H 0.96994 * 120.00383 * 0.02562 * 8 7 6 27 27 H 0.96998 * 119.99952 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.0885 2.5728 -0.0005 5 6 1.2787 3.8838 -0.0010 6 6 2.5681 4.3797 -0.0016 7 6 3.6307 3.4735 -0.0070 8 7 4.9400 3.9259 -0.0136 9 16 6.1910 2.8408 -0.0192 10 8 7.3868 3.6072 -0.0600 11 8 5.9076 1.8965 1.0041 12 6 6.1114 1.9612 -1.5439 13 1 5.3345 2.1888 -2.2587 14 6 7.0410 0.9822 -1.8243 15 7 7.9874 0.7054 -0.9540 16 14 6.9572 0.0502 -3.4410 17 1 5.8083 0.5473 -4.2398 18 1 8.2162 0.2608 -4.1997 19 1 6.7800 -1.3988 -3.1683 20 7 3.3674 2.1707 -0.0005 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.4347 4.5577 -0.0010 25 1 2.7502 5.4443 -0.0024 26 1 5.1241 4.8782 -0.0141 27 1 8.6415 0.0170 -1.1514 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192934781.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:05:57 Heat of formation + Delta-G solvation = -38.698119 kcal Electronic energy + Delta-G solvation = -17121.000004 eV Core-core repulsion = 14132.005354 eV Total energy + Delta-G solvation = -2988.994650 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.018 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.57449 -35.73314 -35.23844 -34.05109 -33.08064 -32.64185 -30.60802 -28.69299 -26.13071 -24.46725 -23.61267 -19.36270 -18.88196 -18.07634 -16.67093 -16.18283 -15.91196 -15.35532 -15.04124 -14.83532 -14.33454 -14.03060 -13.69513 -13.38482 -13.33208 -12.55268 -12.13908 -11.81950 -11.32916 -11.18962 -10.93633 -10.74890 -10.55761 -10.35831 -10.30391 -10.22144 -10.21742 -9.22002 -9.00973 -8.94189 -8.61927 -7.53437 -6.68399 -5.26978 1.07833 1.46311 1.46990 2.02146 2.37738 3.09747 3.17074 3.25129 3.84699 3.96413 4.14791 4.55951 4.67383 4.85132 5.15378 5.21795 5.28652 5.32474 5.52327 5.68096 5.86196 6.10923 6.41903 6.47718 7.06771 7.34268 7.51103 7.98294 8.22684 8.91693 10.27094 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.018214 B = 0.008319 C = 0.006493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.914321 B = 3365.022524 C = 4311.355367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S 0.021 5.979 3 C 0.335 3.665 4 N -0.562 5.562 5 C 0.179 3.821 6 C -0.283 4.283 7 C 0.457 3.543 8 N -1.034 6.034 9 S 2.690 3.310 10 O -0.995 6.995 11 O -0.968 6.968 12 C -0.991 4.991 13 H 0.100 0.900 14 C 0.135 3.865 15 N -0.847 5.847 16 Si 0.923 3.077 17 H -0.263 1.263 18 H -0.272 1.272 19 H -0.269 1.269 20 N -0.511 5.511 21 H 0.101 0.899 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.168 0.832 25 H 0.146 0.854 26 H 0.424 0.576 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.149 3.720 -0.208 14.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 S 0.255 5.745 3 C -0.042 4.042 4 N -0.284 5.284 5 C 0.012 3.988 6 C -0.314 4.314 7 C 0.210 3.790 8 N -0.773 5.773 9 S 2.792 3.208 10 O -0.986 6.986 11 O -0.957 6.957 12 C -1.126 5.126 13 H 0.118 0.882 14 C -0.083 4.083 15 N -0.477 5.477 16 Si 0.747 3.253 17 H -0.187 1.187 18 H -0.197 1.197 19 H -0.194 1.194 20 N -0.235 5.235 21 H 0.120 0.880 22 H 0.106 0.894 23 H 0.106 0.894 24 H 0.186 0.814 25 H 0.164 0.836 26 H 0.258 0.742 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.717 1.405 0.603 12.808 hybrid contribution -0.709 2.036 -1.371 2.555 sum -13.426 3.441 -0.768 13.881 Atomic orbital electron populations 1.23559 0.95724 1.05852 1.06873 1.86253 1.04618 0.93537 1.90137 1.24617 0.85818 1.00540 0.93256 1.68740 1.33891 1.04317 1.21452 1.22811 0.95843 0.91247 0.88852 1.22250 0.93735 1.01453 1.13976 1.18151 0.85869 0.88990 0.86031 1.54520 1.16734 1.23225 1.82799 1.01475 0.69903 0.72296 0.77154 1.93417 1.43000 1.72585 1.89572 1.93413 1.82939 1.59626 1.59749 1.30134 1.23049 1.34347 1.25069 0.88176 1.24695 0.91588 0.93731 0.98243 1.69890 1.13370 1.29469 1.34960 0.86093 0.78886 0.79404 0.80946 1.18677 1.19713 1.19371 1.68203 1.21979 1.13628 1.19661 0.87999 0.89351 0.89357 0.81450 0.83617 0.74226 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.62 101.05 0.97 -0.70 15 2 S 0.02 0.35 22.89 -107.50 -2.46 -2.11 15 3 C 0.33 6.39 7.85 -90.89 -0.71 5.68 15 4 N -0.56 -8.91 9.13 -13.52 -0.12 -9.03 15 5 C 0.18 2.35 11.28 -17.31 -0.20 2.15 15 6 C -0.28 -4.06 10.03 -39.08 -0.39 -4.45 15 7 C 0.46 8.98 7.35 -154.84 -1.14 7.84 15 8 N -1.03 -20.90 5.84 31.23 0.18 -20.71 15 9 S 2.69 72.49 4.66 -107.50 -0.50 71.99 15 10 O -1.00 -28.74 18.02 -57.17 -1.03 -29.77 15 11 O -0.97 -28.99 16.91 -57.17 -0.97 -29.95 15 12 C -0.99 -27.87 9.37 30.60 0.29 -27.59 15 13 H 0.10 2.67 7.81 -52.49 -0.41 2.26 15 14 C 0.14 3.83 5.46 -17.82 -0.10 3.73 15 15 N -0.85 -25.09 13.19 55.43 0.73 -24.35 15 16 Si 0.92 21.18 29.54 -169.99 -5.02 16.16 15 17 H -0.26 -5.88 7.11 56.52 0.40 -5.48 15 18 H -0.27 -5.95 7.11 56.52 0.40 -5.54 15 19 H -0.27 -5.96 7.11 56.52 0.40 -5.55 15 20 N -0.51 -11.41 8.48 -12.68 -0.11 -11.51 15 21 H 0.10 0.86 8.14 -51.92 -0.42 0.44 15 22 H 0.09 0.95 8.11 -51.92 -0.42 0.53 15 23 H 0.09 0.95 8.11 -51.92 -0.42 0.53 15 24 H 0.17 1.40 8.06 -52.48 -0.42 0.98 15 25 H 0.15 1.50 8.06 -52.49 -0.42 1.08 15 26 H 0.42 6.60 8.84 -34.47 -0.30 6.29 15 27 H 0.29 7.71 8.31 -40.82 -0.34 7.37 15 LS Contribution 276.38 15.07 4.17 4.17 Total: -1.00 -37.19 276.38 -8.37 -45.56 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -1.96 Total: 2.90 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -1.28 Total: -13.34 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: 0.68 Total: -65.61 kcal Atomic # 8 Polarization: -57.72 SS G_CDS: -2.00 Total: -59.72 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 72.84 SS G_CDS: -2.96 Total: 69.88 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -37.19 -8.37 -45.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192934781.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.866 kcal (2) G-P(sol) polarization free energy of solvation -37.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds