Wall clock time and date at job start Mon Mar 30 2020 20:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76202 * 100.00115 * 2 1 4 4 N 1.32477 * 119.13842 * 180.02562 * 3 2 1 5 5 C 1.32279 * 120.80803 * 180.02562 * 4 3 2 6 6 C 1.39186 * 119.11538 * 0.24114 * 5 4 3 7 7 N 1.40094 * 120.78575 * 179.73002 * 6 5 4 8 8 S 1.65597 * 119.99891 * 255.17539 * 7 6 5 9 9 O 1.42102 * 106.40187 * 177.74134 * 8 7 6 10 10 O 1.42098 * 106.40366 * 310.65766 * 8 7 6 11 11 C 1.76200 * 107.21848 * 64.20030 * 8 7 6 12 12 H 1.07997 * 119.99888 * 4.86394 * 11 8 7 13 13 C 1.37883 * 119.99970 * 184.86008 * 11 8 7 14 14 N 1.31517 * 119.99827 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 119.99879 * 179.97438 * 13 11 8 16 16 H 1.48492 * 109.47192 * 90.00302 * 15 13 11 17 17 H 1.48498 * 109.46882 * 210.00383 * 15 13 11 18 18 H 1.48499 * 109.47259 * 330.00343 * 15 13 11 19 19 C 1.39187 * 118.42591 * 359.49533 * 6 5 4 20 20 N 1.32276 * 119.11438 * 0.50726 * 19 6 5 21 21 H 1.09002 * 109.46860 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47034 * 300.00378 * 1 2 3 23 23 H 1.09002 * 109.46854 * 60.00354 * 1 2 3 24 24 H 1.07998 * 120.44065 * 179.97438 * 5 4 3 25 25 H 0.96999 * 120.00145 * 75.17492 * 7 6 5 26 26 H 0.96998 * 119.99355 * 179.97438 * 14 13 11 27 27 H 1.08001 * 120.44214 * 180.24127 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 3.3676 2.1695 -0.0005 5 6 3.6352 3.4650 0.0000 6 6 2.5813 4.3742 0.0062 7 7 2.8246 5.7538 0.0126 8 16 2.6093 6.6261 1.4036 9 8 2.9837 7.9631 1.1009 10 8 1.3275 6.2726 1.9046 11 6 3.7828 6.0344 2.5772 12 1 4.5142 5.2958 2.2842 13 6 3.7674 6.5144 3.8697 14 7 2.8765 7.4135 4.2266 15 14 5.0111 5.8865 5.1141 16 1 6.2248 6.7411 5.0753 17 1 4.4167 5.9322 6.4742 18 1 5.3803 4.4870 4.7820 19 6 1.2801 3.8803 0.0008 20 7 1.0885 2.5715 0.0004 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 4.6577 3.8125 0.0000 25 1 3.1192 6.1982 -0.7978 26 1 2.8654 7.7509 5.1360 27 1 0.4380 4.5566 0.0015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192943762.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:06:02 Heat of formation + Delta-G solvation = -43.651106 kcal Electronic energy + Delta-G solvation = -16912.265181 eV Core-core repulsion = 13923.055754 eV Total energy + Delta-G solvation = -2989.209427 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.018 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.70656 -35.54907 -35.12057 -34.18508 -33.64769 -33.19121 -29.74752 -28.79127 -26.27232 -24.42310 -23.77724 -19.28813 -18.47842 -18.01216 -17.47070 -17.02619 -16.35349 -15.31424 -15.05837 -14.76812 -14.11244 -13.95816 -13.71292 -13.47295 -13.39351 -12.61151 -12.13584 -11.78200 -11.37936 -11.28220 -11.03140 -10.71707 -10.67476 -10.58461 -10.53950 -10.40219 -10.33495 -9.66588 -9.34543 -9.00656 -8.68629 -7.68225 -6.82016 -5.46008 0.81436 1.22335 1.27040 2.06547 2.13764 3.01581 3.08580 3.15285 3.76138 3.95786 4.30765 4.37284 4.53670 4.77999 4.82273 5.09352 5.17375 5.24295 5.56774 5.77536 5.89043 6.07328 6.37929 6.54660 6.96484 7.20635 7.57893 7.81891 7.95596 8.77041 10.12398 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.022604 B = 0.006194 C = 0.005478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.419896 B = 4519.286362 C = 5109.731763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.008 6.008 3 C 0.281 3.719 4 N -0.495 5.495 5 C 0.164 3.836 6 C 0.060 3.940 7 N -1.075 6.075 8 S 2.703 3.297 9 O -0.996 6.996 10 O -0.992 6.992 11 C -1.018 5.018 12 H 0.103 0.897 13 C 0.134 3.866 14 N -0.842 5.842 15 Si 0.921 3.079 16 H -0.265 1.265 17 H -0.274 1.274 18 H -0.261 1.261 19 C 0.172 3.828 20 N -0.517 5.517 21 H 0.103 0.897 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.178 0.822 25 H 0.414 0.586 26 H 0.293 0.707 27 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.532 -10.835 -8.046 13.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.225 5.775 3 C -0.094 4.094 4 N -0.212 5.212 5 C -0.008 4.008 6 C -0.044 4.044 7 N -0.826 5.826 8 S 2.804 3.196 9 O -0.987 6.987 10 O -0.982 6.982 11 C -1.152 5.152 12 H 0.121 0.879 13 C -0.084 4.084 14 N -0.471 5.471 15 Si 0.745 3.255 16 H -0.190 1.190 17 H -0.198 1.198 18 H -0.185 1.185 19 C 0.001 3.999 20 N -0.234 5.234 21 H 0.121 0.879 22 H 0.111 0.889 23 H 0.109 0.891 24 H 0.195 0.805 25 H 0.250 0.750 26 H 0.103 0.897 27 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.817 -12.061 -7.669 14.408 hybrid contribution 0.614 1.734 0.614 1.939 sum -1.203 -10.327 -7.055 12.564 Atomic orbital electron populations 1.23548 0.94219 1.06038 1.07435 1.85626 1.06795 0.93939 1.91129 1.24808 0.87579 1.00466 0.96584 1.68466 1.20955 1.16505 1.15245 1.23710 1.00548 0.87302 0.89242 1.18898 0.94542 0.86198 1.04713 1.53965 1.85588 1.12919 1.30154 1.01010 0.75170 0.72164 0.71269 1.93407 1.85214 1.35671 1.84368 1.93377 1.42793 1.83903 1.78109 1.30407 1.35139 1.38957 1.10717 0.87881 1.24736 0.94497 0.91250 0.97961 1.69886 1.31300 1.24133 1.21813 0.86140 0.80370 0.80220 0.78818 1.18980 1.19839 1.18529 1.23731 0.96860 0.91084 0.88206 1.68735 1.34211 1.03920 1.16582 0.87856 0.88924 0.89132 0.80506 0.75048 0.89694 0.80368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.61 101.05 0.97 -0.44 15 2 S -0.01 -0.10 22.89 -107.50 -2.46 -2.56 15 3 C 0.28 4.68 7.85 -90.97 -0.71 3.96 15 4 N -0.50 -8.52 10.39 -13.33 -0.14 -8.66 15 5 C 0.16 2.72 11.25 -17.01 -0.19 2.53 15 6 C 0.06 1.06 5.85 -83.38 -0.49 0.57 15 7 N -1.08 -19.69 5.76 32.60 0.19 -19.50 15 8 S 2.70 67.59 5.02 -107.50 -0.54 67.05 15 9 O -1.00 -27.46 18.02 -57.17 -1.03 -28.49 15 10 O -0.99 -27.28 17.10 -57.17 -0.98 -28.26 15 11 C -1.02 -27.00 9.67 30.60 0.30 -26.70 15 12 H 0.10 2.49 7.81 -52.49 -0.41 2.08 15 13 C 0.13 3.65 5.46 -17.82 -0.10 3.55 15 14 N -0.84 -24.08 13.10 55.43 0.73 -23.36 15 15 Si 0.92 20.29 29.54 -169.99 -5.02 15.27 15 16 H -0.26 -5.61 7.11 56.52 0.40 -5.21 15 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 18 H -0.26 -5.63 7.11 56.52 0.40 -5.23 15 19 C 0.17 3.02 10.63 -17.01 -0.18 2.84 15 20 N -0.52 -8.71 9.12 -13.33 -0.12 -8.83 15 21 H 0.10 0.73 8.14 -51.92 -0.42 0.30 15 22 H 0.09 1.00 8.11 -51.91 -0.42 0.58 15 23 H 0.09 0.89 8.11 -51.92 -0.42 0.47 15 24 H 0.18 2.46 8.06 -52.49 -0.42 2.03 15 25 H 0.41 6.12 8.96 -34.47 -0.31 5.81 15 26 H 0.29 7.53 8.31 -40.82 -0.34 7.19 15 27 H 0.18 2.93 8.03 -52.49 -0.42 2.51 15 LS Contribution 278.11 15.07 4.19 4.19 Total: -1.00 -34.15 278.11 -7.55 -41.70 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -1.96 Total: 5.15 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -0.40 Total: -13.69 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 0.65 Total: -60.35 kcal Atomic # 8 Polarization: -54.74 SS G_CDS: -2.01 Total: -56.75 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 67.49 SS G_CDS: -3.00 Total: 64.49 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -34.15 -7.55 -41.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192943762.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.954 kcal (2) G-P(sol) polarization free energy of solvation -34.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds