Wall clock time and date at job start Mon Mar 30 2020 20:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99716 * 2 1 4 4 H 1.48501 * 109.46962 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47020 * 300.00183 * 3 2 1 6 6 H 1.48500 * 109.47057 * 60.00170 * 3 2 1 7 7 C 1.37878 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99847 * 179.97438 * 7 2 1 9 9 S 1.76194 * 119.99958 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40574 * 66.46096 * 9 7 2 11 11 O 1.42104 * 106.40303 * 293.54219 * 9 7 2 12 12 N 1.65604 * 107.21856 * 180.02562 * 9 7 2 13 13 C 1.47067 * 136.05274 * 269.62904 * 12 9 7 14 14 C 1.53497 * 87.98534 * 153.13757 * 13 12 9 15 15 O 1.42906 * 114.20386 * 272.47892 * 14 13 12 16 16 C 1.52997 * 114.21050 * 139.65380 * 14 13 12 17 17 F 1.39903 * 109.46878 * 326.40241 * 16 14 13 18 18 F 1.39900 * 109.47188 * 86.39827 * 16 14 13 19 19 F 1.39897 * 109.47304 * 206.40127 * 16 14 13 20 20 C 1.47066 * 136.06141 * 89.99787 * 12 9 7 21 21 H 0.96993 * 120.00119 * 359.97438 * 1 2 3 22 22 H 1.09007 * 113.46858 * 267.91239 * 13 12 9 23 23 H 1.08993 * 113.47208 * 38.35575 * 13 12 9 24 24 H 0.96695 * 113.99877 * 273.59604 * 15 14 13 25 25 H 1.09005 * 113.46156 * 321.64466 * 20 12 9 26 26 H 1.08994 * 113.46837 * 92.02107 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 16 1.1237 -2.7199 -0.0005 10 8 0.4511 -2.7950 -1.2500 11 8 0.4520 -2.7955 1.2494 12 7 2.2485 -3.9354 -0.0005 13 6 2.9628 -4.7170 -1.0211 14 6 4.0951 -4.9102 -0.0029 15 8 5.0716 -3.8669 -0.0076 16 6 4.7047 -6.3135 -0.0013 17 9 3.7120 -7.2535 -0.2981 18 9 5.7163 -6.3836 -0.9651 19 9 5.2432 -6.5866 1.2607 20 6 2.9678 -4.7126 1.0199 21 1 -0.4850 0.8400 0.0004 22 1 2.4576 -5.6448 -1.2897 23 1 3.2568 -4.1295 -1.8909 24 1 5.7803 -3.9944 -0.6530 25 1 3.2659 -4.1211 1.8857 26 1 2.4634 -5.6386 1.2958 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951108.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:06:04 Heat of formation + Delta-G solvation = -244.872209 kcal Electronic energy + Delta-G solvation = -20342.607469 eV Core-core repulsion = 16327.770078 eV Total energy + Delta-G solvation = -4014.837392 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 275.027 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.27890 -47.82818 -47.73384 -39.76647 -35.43959 -35.30761 -34.07018 -33.11228 -29.15409 -26.15448 -26.11037 -25.01640 -21.00111 -19.25233 -18.70529 -18.59672 -18.44167 -17.44851 -16.41487 -15.66671 -15.23575 -14.86024 -14.72383 -14.55669 -14.34647 -14.19504 -13.97629 -13.91555 -13.86485 -13.71429 -13.30221 -12.94914 -12.05981 -11.95813 -11.44305 -11.24439 -11.16009 -10.59325 -10.54171 -10.41085 -10.33261 -10.19365 -9.28263 -9.06103 -8.50899 -6.73313 -5.34512 1.95525 2.51168 3.04947 3.12854 3.21425 3.36920 3.50411 3.65131 3.88053 4.06092 4.37942 4.48804 4.59933 5.07532 5.27235 5.46040 5.56702 5.62662 5.79620 5.93536 6.79831 7.09869 7.22591 7.31805 8.00384 8.86777 10.20907 Molecular weight = 275.03amu Principal moments of inertia in cm(-1) A = 0.030982 B = 0.006361 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.529218 B = 4400.803236 C = 4844.413632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.131 3.869 3 Si 0.925 3.075 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.011 5.011 8 H 0.108 0.892 9 S 2.733 3.267 10 O -0.995 6.995 11 O -0.994 6.994 12 N -1.030 6.030 13 C 0.114 3.886 14 C 0.039 3.961 15 O -0.493 6.493 16 C 0.439 3.561 17 F -0.173 7.173 18 F -0.183 7.183 19 F -0.175 7.175 20 C 0.150 3.850 21 H 0.291 0.709 22 H 0.097 0.903 23 H 0.096 0.904 24 H 0.386 0.614 25 H 0.100 0.900 26 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.802 -10.295 -0.934 14.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.087 4.087 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.146 5.146 8 H 0.126 0.874 9 S 2.835 3.165 10 O -0.986 6.986 11 O -0.985 6.985 12 N -0.864 5.864 13 C -0.014 4.014 14 C -0.008 4.008 15 O -0.299 6.299 16 C 0.383 3.617 17 F -0.155 7.155 18 F -0.165 7.165 19 F -0.156 7.156 20 C 0.024 3.976 21 H 0.101 0.899 22 H 0.115 0.885 23 H 0.114 0.886 24 H 0.235 0.765 25 H 0.118 0.882 26 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.123 -9.965 -0.465 13.518 hybrid contribution 1.477 0.713 -0.468 1.706 sum 10.600 -9.252 -0.933 14.101 Atomic orbital electron populations 1.69900 1.06810 1.30773 1.40316 1.24794 0.94505 1.00923 0.88449 0.86069 0.80500 0.80078 0.78526 1.18497 1.19626 1.19589 1.30551 1.06499 1.10988 1.66515 0.87397 1.00161 0.71055 0.72413 0.72843 1.93370 1.71959 1.87305 1.45925 1.93372 1.71999 1.87284 1.45858 1.60736 1.61639 1.50773 1.13233 1.22949 0.88357 0.97165 0.92880 1.24204 0.89796 0.82248 1.04506 1.86749 1.38060 1.42134 1.62936 1.21239 0.76596 0.90081 0.73824 1.93190 1.61266 1.67916 1.93082 1.93166 1.62142 1.96892 1.64289 1.93211 1.86661 1.94913 1.40859 1.22327 0.85532 0.97218 0.92570 0.89858 0.88488 0.88602 0.76460 0.88160 0.88249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.86 13.19 55.43 0.73 -24.13 15 2 C 0.13 3.65 5.46 -17.82 -0.10 3.56 15 3 Si 0.92 20.62 29.54 -169.99 -5.02 15.59 15 4 H -0.26 -5.64 7.11 56.52 0.40 -5.24 15 5 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 7 C -1.01 -27.93 9.75 30.60 0.30 -27.63 15 8 H 0.11 2.79 7.81 -52.49 -0.41 2.38 15 9 S 2.73 72.70 5.55 -107.50 -0.60 72.11 15 10 O -0.99 -28.95 18.02 -57.17 -1.03 -29.98 15 11 O -0.99 -29.05 18.02 -57.17 -1.03 -30.08 15 12 N -1.03 -20.57 4.23 -125.16 -0.53 -21.10 15 13 C 0.11 1.73 8.03 -8.51 -0.07 1.66 15 14 C 0.04 0.52 1.60 -90.11 -0.14 0.38 15 15 O -0.49 -6.60 13.56 -35.23 -0.48 -7.08 15 16 C 0.44 5.02 2.93 37.16 0.11 5.13 15 17 F -0.17 -1.99 15.71 2.25 0.04 -1.96 15 18 F -0.18 -1.94 16.61 2.25 0.04 -1.90 15 19 F -0.18 -2.08 17.19 2.25 0.04 -2.05 15 20 C 0.15 2.37 7.97 -8.51 -0.07 2.30 15 21 H 0.29 7.63 8.31 -40.82 -0.34 7.29 15 22 H 0.10 1.25 7.07 -51.93 -0.37 0.89 15 23 H 0.10 1.37 8.14 -51.93 -0.42 0.94 15 24 H 0.39 3.36 8.38 45.56 0.38 3.74 15 25 H 0.10 1.56 8.14 -51.93 -0.42 1.14 15 26 H 0.10 1.30 7.92 -51.93 -0.41 0.88 15 LS Contribution 264.45 15.07 3.99 3.99 Total: -1.00 -35.38 264.45 -4.62 -40.00 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -0.79 Total: 1.20 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 0.03 Total: -14.61 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.20 Total: -45.23 kcal Atomic # 8 Polarization: -64.60 SS G_CDS: -2.54 Total: -67.14 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 0.11 Total: -5.90 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 72.70 SS G_CDS: -0.60 Total: 72.11 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -35.38 -4.62 -40.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951108.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.877 kcal (2) G-P(sol) polarization free energy of solvation -35.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds