Wall clock time and date at job start Mon Mar 30 2020 20:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38288 * 119.95679 * 2 1 4 4 C 1.38386 * 120.13806 * 179.97438 * 3 2 1 5 5 Cl 1.73596 * 119.97637 * 180.02562 * 4 3 2 6 6 C 1.38245 * 120.04856 * 0.04653 * 4 3 2 7 7 C 1.38875 * 119.90800 * 359.97324 * 6 4 3 8 8 N 1.39668 * 120.06257 * 179.97438 * 7 6 4 9 9 S 1.65604 * 120.00198 * 45.00405 * 8 7 6 10 10 O 1.42099 * 106.40470 * 178.53560 * 9 8 7 11 11 O 1.42094 * 106.40205 * 311.46155 * 9 8 7 12 12 C 1.76208 * 107.21650 * 64.99684 * 9 8 7 13 13 H 1.08002 * 119.99826 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99951 * 179.97438 * 12 9 8 15 15 N 1.31509 * 120.00052 * 0.02562 * 14 12 9 16 16 Si 1.86794 * 119.99888 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47245 * 60.00349 * 16 14 12 18 18 H 1.48506 * 109.47109 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47574 * 300.00308 * 16 14 12 20 20 C 1.38093 * 119.95546 * 180.02562 * 2 1 3 21 21 H 1.09002 * 109.47147 * 269.97562 * 1 2 3 22 22 H 1.09000 * 109.47309 * 29.97957 * 1 2 3 23 23 H 1.08998 * 109.47347 * 149.97456 * 1 2 3 24 24 H 1.08000 * 119.92927 * 359.97438 * 3 2 1 25 25 H 1.07995 * 120.04656 * 180.25570 * 6 4 3 26 26 H 0.97006 * 120.00298 * 225.00066 * 8 7 6 27 27 H 0.96998 * 120.00358 * 179.97438 * 15 14 12 28 28 H 1.07996 * 120.02328 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1981 0.0000 4 6 3.5813 1.2025 0.0005 5 17 4.4439 2.7090 0.0012 6 6 4.2774 0.0081 0.0001 7 6 3.5859 -1.1963 -0.0003 8 7 4.2858 -2.4049 -0.0013 9 16 5.5787 -2.6139 1.0122 10 8 6.0450 -3.9393 0.7998 11 8 6.4014 -1.4661 0.8551 12 6 4.9619 -2.5619 2.6620 13 1 3.9068 -2.4143 2.8396 14 6 5.8259 -2.7108 3.7260 15 7 7.1105 -2.8911 3.5097 16 14 5.1721 -2.6549 5.4749 17 1 4.1770 -3.7405 5.6663 18 1 6.2949 -2.8395 6.4293 19 1 4.5246 -1.3412 5.7197 20 6 2.1965 -1.1965 -0.0005 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3634 0.8902 -0.5135 23 1 -0.3634 -0.8897 -0.5142 24 1 1.6556 2.1324 -0.0004 25 1 5.3573 0.0115 0.0047 26 1 4.0146 -3.1220 -0.5956 27 1 7.7185 -2.9955 4.2583 28 1 1.6562 -2.1315 -0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192979125.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:06:08 Heat of formation + Delta-G solvation = -82.721405 kcal Electronic energy + Delta-G solvation = -17005.840559 eV Core-core repulsion = 13980.600459 eV Total energy + Delta-G solvation = -3025.240100 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.36321 -36.30936 -35.48782 -34.75304 -34.15336 -33.14889 -31.87970 -28.85312 -26.81562 -26.20969 -22.24653 -21.41253 -19.14049 -17.60246 -17.22026 -16.29914 -15.91851 -15.27916 -15.01898 -14.39380 -14.05407 -13.79885 -13.60577 -13.00166 -12.64681 -12.35558 -12.09411 -11.88416 -11.54358 -11.35137 -11.25922 -11.23158 -10.75799 -10.66290 -10.54954 -10.47344 -10.15974 -9.84070 -9.29395 -8.95372 -8.39438 -7.95451 -6.77284 -5.40516 1.40131 1.49869 2.10601 2.40281 3.06368 3.10470 3.16221 3.83703 4.00234 4.45630 4.58659 4.89590 5.18831 5.28235 5.39977 5.57508 5.60109 5.61070 5.80829 5.89760 6.00919 6.33726 6.39947 6.49986 6.63170 6.90579 7.05455 7.25994 7.69117 7.88678 8.81597 10.17168 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.017606 B = 0.006849 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.947800 B = 4086.943323 C = 4133.725815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.064 4.064 3 C -0.137 4.137 4 C -0.007 4.007 5 Cl -0.074 7.074 6 C -0.147 4.147 7 C 0.196 3.804 8 N -1.073 6.073 9 S 2.702 3.298 10 O -0.995 6.995 11 O -0.993 6.993 12 C -1.014 5.014 13 H 0.104 0.896 14 C 0.135 3.865 15 N -0.844 5.844 16 Si 0.922 3.078 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.263 1.263 20 C -0.142 4.142 21 H 0.072 0.928 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.129 0.871 25 H 0.172 0.828 26 H 0.414 0.586 27 H 0.293 0.707 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.373 6.108 -5.589 14.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.065 4.065 3 C -0.157 4.157 4 C -0.034 4.034 5 Cl -0.045 7.045 6 C -0.168 4.168 7 C 0.098 3.902 8 N -0.817 5.817 9 S 2.804 3.196 10 O -0.986 6.986 11 O -0.983 6.983 12 C -1.148 5.148 13 H 0.122 0.878 14 C -0.084 4.084 15 N -0.473 5.473 16 Si 0.746 3.254 17 H -0.188 1.188 18 H -0.200 1.200 19 H -0.187 1.187 20 C -0.164 4.164 21 H 0.090 0.910 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.147 0.853 25 H 0.189 0.811 26 H 0.248 0.752 27 H 0.103 0.897 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.083 6.149 -5.735 13.129 hybrid contribution -0.763 -0.176 1.164 1.403 sum -10.845 5.972 -4.571 13.198 Atomic orbital electron populations 1.20755 0.90664 1.02682 1.02522 1.19567 0.95932 0.92007 0.99005 1.20778 0.91771 0.98336 1.04823 1.20605 0.91936 0.86824 1.04037 1.98348 1.77443 1.31818 1.96934 1.21941 1.03629 0.89557 1.01720 1.17185 0.90719 0.85249 0.97064 1.54077 1.52122 1.19494 1.56016 1.00991 0.70904 0.72979 0.74720 1.93398 1.78352 1.39463 1.87357 1.93313 1.65277 1.52139 1.87527 1.30356 1.04820 1.65984 1.13670 0.87818 1.24727 0.93583 0.88461 1.01634 1.69869 1.03032 1.38793 1.35605 0.86164 0.79294 0.79901 0.80061 1.18782 1.19999 1.18703 1.21101 0.92773 0.98295 1.04218 0.90955 0.91515 0.91409 0.85347 0.81068 0.75211 0.89662 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 36.00 0.36 -0.68 15 2 C -0.06 -0.86 5.88 -104.66 -0.62 -1.47 15 3 C -0.14 -1.94 9.48 -39.51 -0.37 -2.32 15 4 C -0.01 -0.11 6.32 -39.52 -0.25 -0.36 15 5 Cl -0.07 -1.16 28.95 -51.86 -1.50 -2.66 15 6 C -0.15 -2.86 8.97 -39.34 -0.35 -3.22 15 7 C 0.20 3.64 6.21 -83.79 -0.52 3.12 15 8 N -1.07 -21.06 5.77 32.41 0.19 -20.88 15 9 S 2.70 69.82 4.95 -107.50 -0.53 69.29 15 10 O -1.00 -28.30 18.02 -57.17 -1.03 -29.33 15 11 O -0.99 -27.66 14.94 -57.17 -0.85 -28.52 15 12 C -1.01 -27.52 9.68 30.60 0.30 -27.22 15 13 H 0.10 2.61 7.81 -52.49 -0.41 2.20 15 14 C 0.13 3.70 5.46 -17.82 -0.10 3.61 15 15 N -0.84 -24.37 13.19 55.43 0.73 -23.64 15 16 Si 0.92 20.46 29.54 -169.99 -5.02 15.44 15 17 H -0.26 -5.62 7.11 56.52 0.40 -5.22 15 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 19 H -0.26 -5.68 7.11 56.52 0.40 -5.28 15 20 C -0.14 -2.16 9.62 -39.37 -0.38 -2.53 15 21 H 0.07 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.07 0.53 8.08 -51.93 -0.42 0.11 15 23 H 0.07 0.56 8.08 -51.93 -0.42 0.14 15 24 H 0.13 1.48 8.06 -52.49 -0.42 1.06 15 25 H 0.17 3.75 5.57 -52.49 -0.29 3.46 15 26 H 0.41 6.67 8.95 -34.47 -0.31 6.36 15 27 H 0.29 7.63 8.31 -40.82 -0.34 7.29 15 28 H 0.13 1.66 8.06 -52.49 -0.42 1.24 15 LS Contribution 279.37 15.07 4.21 4.21 Total: -1.00 -33.01 279.37 -8.00 -41.00 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -2.25 Total: 6.17 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: -1.93 Total: -31.09 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.92 Total: -44.52 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: -1.88 Total: -57.84 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 69.82 SS G_CDS: -0.53 Total: 69.29 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.50 Total: -2.66 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.01 -8.00 -41.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192979125.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.718 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds