Wall clock time and date at job start Mon Mar 30 2020 20:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46712 * 2 1 4 4 O 1.42892 * 109.47484 * 120.00253 * 2 1 3 5 5 C 1.42906 * 114.00239 * 270.00038 * 4 2 1 6 6 C 1.50697 * 109.47347 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99760 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00127 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99810 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00268 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.46798 * 90.00128 * 10 8 6 12 12 H 1.48496 * 109.46917 * 210.00252 * 10 8 6 13 13 H 1.48496 * 109.46784 * 330.00158 * 10 8 6 14 14 C 1.50703 * 109.46939 * 240.00509 * 2 1 3 15 15 C 1.35420 * 126.76433 * 100.00060 * 14 2 1 16 16 C 1.41482 * 103.97721 * 179.97438 * 15 14 2 17 17 Br 1.89106 * 126.81303 * 179.97438 * 16 15 14 18 18 N 1.30251 * 106.37100 * 0.02562 * 16 15 14 19 19 O 1.20923 * 111.58475 * 359.97438 * 18 16 15 20 20 H 1.08996 * 109.47085 * 299.99361 * 1 2 3 21 21 H 1.09001 * 109.47173 * 59.99707 * 1 2 3 22 22 H 1.09004 * 109.46712 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46720 * 299.99995 * 5 4 2 24 24 H 1.09000 * 109.46956 * 59.99624 * 5 4 2 25 25 H 0.97001 * 120.00333 * 179.97438 * 9 8 6 26 26 H 1.07993 * 128.00867 * 359.93834 * 15 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2002 0.1829 2.2941 6 6 2.7005 -0.6285 3.4613 7 1 2.8554 -1.6919 3.3529 8 6 2.9614 -0.0132 4.6672 9 7 2.7732 1.2817 4.7990 10 14 3.5822 -1.0188 6.1139 11 1 5.0666 -1.0523 6.0927 12 1 3.1190 -0.4001 7.3818 13 1 3.0544 -2.4034 6.0170 14 6 2.0323 -0.7103 -1.2306 15 6 2.4801 -0.1357 -2.3721 16 6 2.8257 -1.2337 -3.1947 17 35 3.5257 -1.1586 -4.9498 18 7 2.5650 -2.3065 -2.5036 19 8 2.1241 -2.0354 -1.4107 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 2.9320 0.9513 2.0449 24 1 1.2539 0.6546 2.5589 25 1 2.9565 1.7146 5.6475 26 1 2.5553 0.9169 -2.6016 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205621660.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:06:20 Heat of formation + Delta-G solvation = 12.061568 kcal Electronic energy + Delta-G solvation = -13596.250006 eV Core-core repulsion = 10917.939447 eV Total energy + Delta-G solvation = -2678.310559 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 274.994 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.00213 -37.52933 -34.36312 -33.34581 -32.36097 -30.83809 -29.68361 -27.25736 -23.87268 -23.41590 -22.35279 -20.62654 -17.73191 -17.46268 -16.45577 -15.76325 -15.23415 -14.42939 -14.27288 -13.86758 -13.48352 -12.72067 -12.17492 -12.12717 -12.03121 -11.88330 -11.59633 -10.95164 -10.88199 -10.75049 -10.57277 -10.16832 -9.86103 -9.51733 -9.23136 -9.02208 -8.33947 -6.19334 -4.21399 0.99121 1.37822 1.94366 3.10096 3.27161 3.32530 3.37849 4.04533 4.32543 4.58599 4.88104 5.17165 5.18692 5.27650 5.36685 5.44998 5.72299 5.90809 6.07105 6.38183 6.89870 7.26616 7.69499 7.99707 8.06394 8.35191 8.90044 9.43731 10.91964 Molecular weight = 274.99amu Principal moments of inertia in cm(-1) A = 0.043237 B = 0.003803 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.434971 B = 7361.346751 C = 7589.914756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.160 3.840 3 H 0.091 0.909 4 O -0.379 6.379 5 C 0.194 3.806 6 C -0.518 4.518 7 H 0.069 0.931 8 C 0.058 3.942 9 N -0.898 5.898 10 Si 0.909 3.091 11 H -0.278 1.278 12 H -0.284 1.284 13 H -0.271 1.271 14 C 0.015 3.985 15 C -0.214 4.214 16 C 0.004 3.996 17 Br 0.040 6.960 18 N -0.339 5.339 19 O 0.136 5.864 20 H 0.077 0.923 21 H 0.061 0.939 22 H 0.067 0.933 23 H 0.010 0.990 24 H 0.013 0.987 25 H 0.265 0.735 26 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.453 -0.353 -18.560 18.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.100 3.900 3 H 0.109 0.891 4 O -0.298 6.298 5 C 0.120 3.880 6 C -0.556 4.556 7 H 0.087 0.913 8 C -0.143 4.143 9 N -0.537 5.537 10 Si 0.736 3.264 11 H -0.204 1.204 12 H -0.210 1.210 13 H -0.195 1.195 14 C -0.049 4.049 15 C -0.238 4.238 16 C -0.232 4.232 17 Br 0.122 6.878 18 N -0.039 5.039 19 O 0.063 5.937 20 H 0.096 0.904 21 H 0.080 0.920 22 H 0.086 0.914 23 H 0.028 0.972 24 H 0.030 0.970 25 H 0.075 0.925 26 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.023 -1.710 -19.309 19.412 hybrid contribution 0.230 0.740 1.040 1.297 sum -0.793 -0.970 -18.269 18.312 Atomic orbital electron populations 1.22297 0.94296 1.03474 1.02727 1.20387 0.93861 0.93869 0.81885 0.89100 1.88027 1.85661 1.36625 1.19534 1.20386 0.95611 0.90084 0.81908 1.21021 1.44411 0.95756 0.94374 0.91327 1.24933 0.95459 0.95154 0.98803 1.69947 1.48634 1.09070 1.26015 0.86314 0.79064 0.80155 0.80880 1.20411 1.21018 1.19521 1.24830 0.99049 0.82870 0.98161 1.22301 1.07566 1.01049 0.92893 1.25170 1.08596 0.92134 0.97350 1.96738 1.83857 1.98590 1.08653 1.74080 1.13216 1.23251 0.93338 1.84931 1.58957 1.24272 1.25494 0.90438 0.91983 0.91391 0.97245 0.96959 0.92525 0.80117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 9.51 37.16 0.35 -2.07 15 2 C 0.16 2.69 3.21 -27.88 -0.09 2.60 15 3 H 0.09 1.39 7.79 -51.93 -0.40 0.98 15 4 O -0.38 -8.52 9.95 -36.17 -0.36 -8.88 15 5 C 0.19 4.94 5.50 36.00 0.20 5.14 15 6 C -0.52 -14.67 9.43 -34.44 -0.32 -14.99 15 7 H 0.07 1.95 7.81 -52.48 -0.41 1.54 15 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 9 N -0.90 -25.84 13.29 55.43 0.74 -25.10 15 10 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 15 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 15 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 13 H -0.27 -6.28 7.11 56.52 0.40 -5.87 15 14 C 0.02 0.24 6.37 -35.31 -0.22 0.02 15 15 C -0.21 -2.92 11.09 -39.35 -0.44 -3.35 15 16 C 0.00 0.06 7.84 -16.99 -0.13 -0.07 15 17 Br 0.04 0.46 34.13 -68.01 -2.32 -1.86 15 18 N -0.34 -5.72 12.07 31.68 0.38 -5.34 15 19 O 0.14 2.40 11.19 16.22 0.18 2.58 15 20 H 0.08 1.14 7.87 -51.93 -0.41 0.73 15 21 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 22 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 23 H 0.01 0.26 8.08 -51.93 -0.42 -0.16 15 24 H 0.01 0.32 7.87 -51.93 -0.41 -0.09 15 25 H 0.27 7.16 8.31 -40.82 -0.34 6.83 15 26 H 0.18 1.86 8.06 -52.49 -0.42 1.44 15 LS Contribution 261.99 15.07 3.95 3.95 Total: -1.00 -29.81 261.99 -5.66 -35.48 By element: Atomic # 1 Polarization: -3.50 SS G_CDS: -2.45 Total: -5.96 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -0.76 Total: -11.20 kcal Atomic # 7 Polarization: -31.56 SS G_CDS: 1.12 Total: -30.44 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.18 Total: -6.30 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 35 Polarization: 0.46 SS G_CDS: -2.32 Total: -1.86 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.81 -5.66 -35.48 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205621660.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.538 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds