Wall clock time and date at job start Mon Mar 30 2020 20:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46712 * 2 1 4 4 O 1.42892 * 109.47484 * 120.00253 * 2 1 3 5 5 C 1.42906 * 114.00239 * 270.00038 * 4 2 1 6 6 C 1.50697 * 109.47347 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99760 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00127 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99810 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00268 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.46798 * 90.00128 * 10 8 6 12 12 H 1.48496 * 109.46917 * 210.00252 * 10 8 6 13 13 H 1.48496 * 109.46784 * 330.00158 * 10 8 6 14 14 C 1.50703 * 109.46939 * 240.00509 * 2 1 3 15 15 C 1.35420 * 126.76433 * 100.00060 * 14 2 1 16 16 C 1.41482 * 103.97721 * 179.97438 * 15 14 2 17 17 Br 1.89106 * 126.81303 * 179.97438 * 16 15 14 18 18 N 1.30251 * 106.37100 * 0.02562 * 16 15 14 19 19 O 1.20923 * 111.58475 * 359.97438 * 18 16 15 20 20 H 1.08996 * 109.47085 * 299.99361 * 1 2 3 21 21 H 1.09001 * 109.47173 * 59.99707 * 1 2 3 22 22 H 1.09004 * 109.46712 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46720 * 299.99995 * 5 4 2 24 24 H 1.09000 * 109.46956 * 59.99624 * 5 4 2 25 25 H 0.97001 * 120.00333 * 179.97438 * 9 8 6 26 26 H 1.07993 * 128.00867 * 359.93834 * 15 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2002 0.1829 2.2941 6 6 2.7005 -0.6285 3.4613 7 1 2.8554 -1.6919 3.3529 8 6 2.9614 -0.0132 4.6672 9 7 2.7732 1.2817 4.7990 10 14 3.5822 -1.0188 6.1139 11 1 5.0666 -1.0523 6.0927 12 1 3.1190 -0.4001 7.3818 13 1 3.0544 -2.4034 6.0170 14 6 2.0323 -0.7103 -1.2306 15 6 2.4801 -0.1357 -2.3721 16 6 2.8257 -1.2337 -3.1947 17 35 3.5257 -1.1586 -4.9498 18 7 2.5650 -2.3065 -2.5036 19 8 2.1241 -2.0354 -1.4107 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 2.9320 0.9513 2.0449 24 1 1.2539 0.6546 2.5589 25 1 2.9565 1.7146 5.6475 26 1 2.5553 0.9169 -2.6016 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205621660.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:06:20 Heat of formation + Delta-G solvation = -6.677104 kcal Electronic energy + Delta-G solvation = -13597.062576 eV Core-core repulsion = 10917.939447 eV Total energy + Delta-G solvation = -2679.123129 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 274.994 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -46.20091 -39.14584 -35.55672 -35.15306 -33.99379 -31.91916 -30.95604 -29.25317 -25.33141 -24.60900 -24.18142 -21.88590 -19.13578 -18.82269 -18.26645 -17.43196 -16.62696 -16.19474 -15.95514 -15.13257 -14.59791 -14.43586 -13.74330 -13.53639 -13.19836 -13.12434 -13.09744 -12.76916 -12.69649 -12.29408 -11.96434 -11.64086 -11.29520 -11.02934 -10.92023 -10.64211 -10.26974 -8.31773 -6.42617 -0.09478 0.14597 0.81969 1.41901 1.43063 1.55225 1.89849 2.34011 2.77057 3.02855 3.27748 3.76774 3.88103 4.04081 4.14297 4.22778 4.67238 4.70455 4.85876 4.94546 5.14599 5.28970 5.55853 5.95831 6.45585 6.77138 6.86923 7.28312 8.79760 Molecular weight = 274.99amu Principal moments of inertia in cm(-1) A = 0.043237 B = 0.003803 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.434971 B = 7361.346751 C = 7589.914756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.153 3.847 3 H 0.108 0.892 4 O -0.401 6.401 5 C 0.209 3.791 6 C -0.551 4.551 7 H 0.058 0.942 8 C 0.012 3.988 9 N -0.925 5.925 10 Si 0.976 3.024 11 H -0.270 1.270 12 H -0.273 1.273 13 H -0.268 1.268 14 C -0.003 4.003 15 C -0.193 4.193 16 C 0.001 3.999 17 Br 0.071 6.929 18 N -0.360 5.360 19 O 0.106 5.894 20 H 0.069 0.931 21 H 0.097 0.903 22 H 0.060 0.940 23 H -0.004 1.004 24 H 0.004 0.996 25 H 0.271 0.729 26 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.220 0.067 -19.290 19.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.093 3.907 3 H 0.126 0.874 4 O -0.321 6.321 5 C 0.135 3.865 6 C -0.588 4.588 7 H 0.076 0.924 8 C -0.187 4.187 9 N -0.564 5.564 10 Si 0.799 3.201 11 H -0.196 1.196 12 H -0.198 1.198 13 H -0.192 1.192 14 C -0.067 4.067 15 C -0.216 4.216 16 C -0.236 4.236 17 Br 0.153 6.847 18 N -0.065 5.065 19 O 0.037 5.963 20 H 0.088 0.912 21 H 0.116 0.884 22 H 0.079 0.921 23 H 0.014 0.986 24 H 0.021 0.979 25 H 0.080 0.920 26 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -0.807 -1.283 -20.039 20.096 hybrid contribution 0.168 0.640 1.091 1.276 sum -0.639 -0.643 -18.948 18.969 Atomic orbital electron populations 1.22256 0.92342 1.03459 1.04075 1.20714 0.95478 0.94416 0.80060 0.87445 1.87955 1.86347 1.37258 1.20548 1.19976 0.94443 0.89547 0.82535 1.21371 1.45616 0.95683 0.96172 0.92420 1.25817 0.95180 0.96299 1.01409 1.70028 1.48921 1.10435 1.27036 0.85287 0.78718 0.78605 0.77479 1.19560 1.19800 1.19199 1.24795 1.00551 0.82697 0.98637 1.22729 1.05100 1.02391 0.91352 1.25665 1.07479 0.91890 0.98579 1.96774 1.83344 1.98500 1.06125 1.74073 1.14384 1.24468 0.93539 1.84894 1.59992 1.25204 1.26170 0.91218 0.88404 0.92118 0.98595 0.97852 0.91986 0.76601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 9.51 71.98 0.68 -3.82 15 2 C 0.15 5.04 3.21 29.85 0.10 5.13 15 3 H 0.11 3.16 7.79 -2.38 -0.02 3.14 15 4 O -0.40 -18.40 9.95 -148.08 -1.47 -19.87 15 5 C 0.21 10.92 5.50 71.24 0.39 11.31 15 6 C -0.55 -31.77 9.43 25.60 0.24 -31.53 15 7 H 0.06 3.36 7.81 -2.91 -0.02 3.34 15 8 C 0.01 0.68 5.46 84.65 0.46 1.14 15 9 N -0.93 -53.32 13.29 21.45 0.28 -53.04 15 10 Si 0.98 43.56 29.54 68.60 2.03 45.59 15 11 H -0.27 -11.67 7.11 99.48 0.71 -10.97 15 12 H -0.27 -11.61 7.11 99.48 0.71 -10.91 15 13 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 14 C 0.00 -0.09 6.37 25.04 0.16 0.07 15 15 C -0.19 -4.81 11.09 22.42 0.25 -4.56 15 16 C 0.00 0.02 7.84 85.73 0.67 0.69 15 17 Br 0.07 1.48 34.13 -20.37 -0.70 0.79 15 18 N -0.36 -12.00 12.07 -55.03 -0.66 -12.66 15 19 O 0.11 3.77 11.19 72.47 0.81 4.58 15 20 H 0.07 2.01 7.87 -2.39 -0.02 2.00 15 21 H 0.10 1.97 8.14 -2.39 -0.02 1.95 15 22 H 0.06 1.74 8.14 -2.38 -0.02 1.72 15 23 H 0.00 -0.20 8.08 -2.39 -0.02 -0.22 15 24 H 0.00 0.19 7.87 -2.39 -0.02 0.18 15 25 H 0.27 14.54 8.31 -92.71 -0.77 13.77 15 26 H 0.22 3.63 8.06 -2.91 -0.02 3.61 15 Total: -1.00 -64.02 261.99 4.43 -59.58 By element: Atomic # 1 Polarization: -4.60 SS G_CDS: 1.19 Total: -3.41 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: 2.96 Total: -21.56 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -0.38 Total: -65.70 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.66 Total: -15.29 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 35 Polarization: 1.48 SS G_CDS: -0.70 Total: 0.79 kcal Total: -64.02 4.43 -59.58 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205621660.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.905 kcal (2) G-P(sol) polarization free energy of solvation -64.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds