Wall clock time and date at job start Mon Mar 30 2020 20:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46634 * 2 1 4 4 C 1.50701 * 109.46822 * 240.00729 * 2 1 3 5 5 H 1.08007 * 119.99711 * 239.99924 * 4 2 1 6 6 C 1.37879 * 120.00288 * 59.99745 * 4 2 1 7 7 N 1.31506 * 120.00012 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99994 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47169 * 59.99633 * 8 6 4 10 10 H 1.48499 * 109.47294 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46895 * 299.99870 * 8 6 4 12 12 N 1.46895 * 109.47415 * 120.00454 * 2 1 3 13 13 C 1.46902 * 111.00056 * 275.00226 * 12 2 1 14 14 C 1.50700 * 109.47166 * 179.97438 * 13 12 2 15 15 C 1.32615 * 119.99834 * 127.10386 * 14 13 12 16 16 C 1.47748 * 119.99970 * 8.48850 * 15 14 13 17 17 C 1.39601 * 120.06973 * 218.06120 * 16 15 14 18 18 C 1.37802 * 119.93645 * 180.02562 * 17 16 15 19 19 C 1.39044 * 120.06523 * 0.02673 * 18 17 16 20 20 N 1.39541 * 119.93374 * 179.97438 * 19 18 17 21 21 C 1.46493 * 119.99650 * 359.97438 * 20 19 18 22 22 C 1.46501 * 120.00010 * 179.72408 * 20 19 18 23 23 C 1.39049 * 120.13512 * 0.23289 * 19 18 17 24 24 C 1.37800 * 120.06389 * 359.48558 * 23 19 18 25 25 H 1.08999 * 109.47530 * 59.99387 * 1 2 3 26 26 H 1.09001 * 109.47039 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47227 * 299.99468 * 1 2 3 28 28 H 0.97003 * 120.00180 * 179.97438 * 7 6 4 29 29 H 1.00895 * 110.99949 * 151.04421 * 12 2 1 30 30 H 1.08997 * 109.47203 * 59.99683 * 13 12 2 31 31 H 1.08998 * 109.46508 * 299.99796 * 13 12 2 32 32 H 1.08001 * 120.00023 * 307.10595 * 14 13 12 33 33 H 1.07994 * 119.99888 * 188.49342 * 15 14 13 34 34 H 1.08006 * 120.03506 * 0.04995 * 17 16 15 35 35 H 1.08001 * 119.96884 * 180.02562 * 18 17 16 36 36 H 1.09004 * 109.47454 * 269.72150 * 21 20 19 37 37 H 1.08997 * 109.47907 * 29.72588 * 21 20 19 38 38 H 1.08999 * 109.47165 * 149.72865 * 21 20 19 39 39 H 1.08994 * 109.47198 * 270.27683 * 22 20 19 40 40 H 1.09005 * 109.46742 * 30.27426 * 22 20 19 41 41 H 1.08998 * 109.46597 * 150.27501 * 22 20 19 42 42 H 1.07999 * 119.96926 * 179.74823 * 23 19 18 43 43 H 1.08004 * 120.03587 * 180.28101 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 1.8257 -2.5199 -4.0079 10 1 1.8268 -0.4195 -5.2206 11 1 3.8062 -1.1205 -4.0084 12 7 2.0197 -0.6926 1.1993 13 6 2.0825 0.2224 2.3469 14 6 2.5874 -0.5221 3.5559 15 6 3.6194 -0.0499 4.2421 16 6 4.1550 1.2935 3.9399 17 6 5.5315 1.5230 3.9801 18 6 6.0280 2.7771 3.6983 19 6 5.1596 3.8137 3.3747 20 7 5.6654 5.0827 3.0903 21 6 7.1100 5.3219 3.1334 22 6 4.7521 6.1744 2.7433 23 6 3.7877 3.5896 3.3391 24 6 3.2856 2.3362 3.6143 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 0.7086 1.1615 -3.4844 29 1 2.9173 -1.1205 1.0285 30 1 1.0871 0.6161 2.5525 31 1 2.7589 1.0460 2.1182 32 1 2.1090 -1.4401 3.8635 33 1 4.0682 -0.6474 5.0218 34 1 6.2066 0.7183 4.2314 35 1 7.0928 2.9552 3.7288 36 1 7.3964 5.6372 4.1368 37 1 7.6383 4.4038 2.8764 38 1 7.3704 6.1030 2.4191 39 1 4.5972 6.1894 1.6645 40 1 3.7967 6.0223 3.2455 41 1 5.1830 7.1236 3.0618 42 1 3.1154 4.3976 3.0914 43 1 2.2203 2.1616 3.5821 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663170770.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:05:30 Heat of formation + Delta-G solvation = 57.387800 kcal Electronic energy + Delta-G solvation = -20695.554492 eV Core-core repulsion = 17741.287908 eV Total energy + Delta-G solvation = -2954.266585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.63140 -37.14326 -35.71005 -33.72938 -31.93006 -31.10962 -29.33514 -28.24445 -27.93261 -25.41855 -24.84805 -23.77142 -22.00804 -20.86160 -19.66022 -18.87207 -17.20070 -16.41742 -15.87036 -15.21263 -15.15804 -14.88251 -14.73389 -14.00366 -13.81724 -13.59001 -13.30791 -13.03018 -12.80187 -12.63451 -12.39124 -12.14982 -12.05082 -11.88918 -11.70868 -11.17170 -10.87394 -10.77706 -10.65934 -10.63298 -10.20746 -10.08267 -9.92868 -9.78244 -8.84037 -8.74359 -8.64386 -8.40831 -7.18624 -6.95546 -5.97752 -4.03694 1.45790 1.64642 2.73773 3.08573 3.34302 3.38042 3.41397 4.11112 4.44610 4.85082 4.86972 5.06401 5.12560 5.17100 5.23224 5.32995 5.37028 5.43994 5.49665 5.56154 5.61775 5.69033 5.74398 5.83006 6.01326 6.18301 6.28174 6.34643 6.47359 6.54836 6.76959 6.91677 6.96522 7.00358 7.17755 7.20013 7.22876 7.32071 7.52996 7.57985 7.83395 7.97052 8.33330 8.47337 8.75556 9.07457 9.61812 11.08635 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.015256 B = 0.004399 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.876725 B = 6363.530102 C = 7256.188741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.212 3.788 3 H 0.000 1.000 4 C -0.517 4.517 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.687 5.687 13 C 0.073 3.927 14 C -0.126 4.126 15 C -0.134 4.134 16 C -0.107 4.107 17 C -0.064 4.064 18 C -0.201 4.201 19 C 0.211 3.789 20 N -0.641 5.641 21 C 0.095 3.905 22 C 0.093 3.907 23 C -0.198 4.198 24 C -0.053 4.053 25 H 0.080 0.920 26 H 0.031 0.969 27 H 0.003 0.997 28 H 0.261 0.739 29 H 0.331 0.669 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.121 0.879 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.389 8.493 14.067 18.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.105 3.895 3 H 0.018 0.982 4 C -0.555 4.555 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.318 5.318 13 C -0.056 4.056 14 C -0.145 4.145 15 C -0.153 4.153 16 C -0.109 4.109 17 C -0.082 4.082 18 C -0.224 4.224 19 C 0.110 3.890 20 N -0.353 5.353 21 C -0.048 4.048 22 C -0.050 4.050 23 C -0.220 4.220 24 C -0.072 4.072 25 H 0.098 0.902 26 H 0.050 0.950 27 H 0.022 0.978 28 H 0.070 0.930 29 H 0.147 0.853 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.139 0.861 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.741 8.572 14.027 18.618 hybrid contribution 1.074 0.114 -1.182 1.602 sum 9.815 8.686 12.845 18.351 Atomic orbital electron populations 1.21713 0.97978 0.99285 0.99248 1.19084 0.92496 0.92345 0.85598 0.98242 1.21242 1.31343 1.12444 0.90509 0.92319 1.24908 0.95085 0.95008 0.98973 1.69888 1.36704 1.22939 1.23452 0.86596 0.79071 0.79810 0.82125 1.20178 1.21323 1.20373 1.60674 1.32082 1.33252 1.05776 1.21407 0.99627 0.94503 0.90079 1.23427 0.95906 0.99890 0.95272 1.21502 0.97915 0.94386 1.01496 1.18815 0.92919 0.93882 1.05262 1.20946 0.94446 0.95708 0.97149 1.20523 0.98659 0.92960 1.10212 1.17863 0.92561 0.84689 0.93893 1.46247 1.05599 1.07591 1.75867 1.21588 0.80654 1.01837 1.00739 1.21624 0.94157 0.88998 1.00216 1.20603 0.93104 0.98167 1.10120 1.21196 0.99670 0.91418 0.94893 0.90152 0.95002 0.97790 0.92953 0.85253 0.91464 0.93960 0.86754 0.86976 0.86273 0.86346 0.93674 0.91308 0.91786 0.93285 0.91219 0.91831 0.86092 0.85633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.19 9.19 37.16 0.34 -2.84 16 2 C 0.21 5.59 2.60 -68.87 -0.18 5.42 16 3 H 0.00 0.00 7.80 -51.93 -0.40 -0.41 16 4 C -0.52 -14.63 8.59 -34.44 -0.30 -14.93 16 5 H 0.06 1.64 7.62 -52.48 -0.40 1.24 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.99 11.32 55.43 0.63 -25.36 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 N -0.69 -15.46 6.29 -109.22 -0.69 -16.14 16 13 C 0.07 1.38 4.23 -4.98 -0.02 1.36 16 14 C -0.13 -2.00 9.71 -36.21 -0.35 -2.35 16 15 C -0.13 -1.92 9.79 -37.60 -0.37 -2.29 16 16 C -0.11 -1.61 5.14 -104.99 -0.54 -2.15 16 17 C -0.06 -0.88 9.77 -39.23 -0.38 -1.26 16 18 C -0.20 -2.67 9.19 -39.44 -0.36 -3.03 16 19 C 0.21 2.91 6.55 -83.75 -0.55 2.36 16 20 N -0.64 -7.40 3.40 -187.51 -0.64 -8.03 16 21 C 0.10 0.83 10.19 59.84 0.61 1.44 16 22 C 0.09 0.89 10.19 59.85 0.61 1.49 16 23 C -0.20 -2.87 9.19 -39.44 -0.36 -3.23 16 24 C -0.05 -0.81 7.31 -39.23 -0.29 -1.10 16 25 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.33 7.40 8.22 -39.29 -0.32 7.08 16 30 H 0.07 1.29 7.28 -51.93 -0.38 0.92 16 31 H 0.04 0.85 4.76 -51.93 -0.25 0.60 16 32 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 35 H 0.12 1.31 6.11 -52.49 -0.32 0.99 16 36 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.59 6.17 -51.93 -0.32 0.27 16 38 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.64 6.18 -51.93 -0.32 0.32 16 41 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 42 H 0.12 1.58 6.11 -52.49 -0.32 1.26 16 43 H 0.13 1.89 6.35 -52.48 -0.33 1.56 16 LS Contribution 342.00 15.07 5.15 5.15 Total: -1.00 -30.78 342.00 -9.38 -40.16 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.58 Total: 6.98 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -2.23 Total: -19.46 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.70 Total: -49.54 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.78 -9.38 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170770.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.550 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds