Wall clock time and date at job start Mon Mar 30 2020 20:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47032 * 2 1 4 4 C 1.50703 * 109.46949 * 120.00164 * 2 1 3 5 5 H 1.07999 * 120.00006 * 119.99699 * 4 2 1 6 6 C 1.37880 * 119.99979 * 300.00058 * 4 2 1 7 7 N 1.31523 * 119.99707 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00198 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46992 * 59.99617 * 8 6 4 10 10 H 1.48500 * 109.47114 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47008 * 300.00045 * 8 6 4 12 12 N 1.46906 * 109.47004 * 239.99639 * 2 1 3 13 13 C 1.46903 * 110.99684 * 85.00264 * 12 2 1 14 14 C 1.50694 * 109.47049 * 179.97438 * 13 12 2 15 15 C 1.32611 * 119.99805 * 125.00022 * 14 13 12 16 16 C 1.47760 * 119.99931 * 180.27336 * 15 14 13 17 17 C 1.39605 * 120.06466 * 359.45163 * 16 15 14 18 18 C 1.37804 * 119.93196 * 179.76859 * 17 16 15 19 19 C 1.39042 * 120.06573 * 0.50390 * 18 17 16 20 20 N 1.39532 * 119.93590 * 179.72539 * 19 18 17 21 21 C 1.46504 * 120.00429 * 174.29086 * 20 19 18 22 22 C 1.46501 * 119.99982 * 354.28918 * 20 19 18 23 23 C 1.39053 * 120.13550 * 359.74671 * 19 18 17 24 24 C 1.37801 * 120.06458 * 0.02562 * 23 19 18 25 25 H 1.09004 * 109.47123 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47205 * 300.00136 * 1 2 3 27 27 H 1.09008 * 109.46705 * 60.00308 * 1 2 3 28 28 H 0.97000 * 119.99344 * 180.02562 * 7 6 4 29 29 H 1.00903 * 110.99962 * 208.95041 * 12 2 1 30 30 H 1.09006 * 109.47074 * 59.99633 * 13 12 2 31 31 H 1.08997 * 109.47309 * 299.99885 * 13 12 2 32 32 H 1.08002 * 120.00290 * 304.99743 * 14 13 12 33 33 H 1.07992 * 120.00436 * 0.02562 * 15 14 13 34 34 H 1.07998 * 120.03384 * 0.02562 * 17 16 15 35 35 H 1.08004 * 119.96489 * 180.25443 * 18 17 16 36 36 H 1.08998 * 109.47354 * 89.99681 * 21 20 19 37 37 H 1.08996 * 109.46952 * 210.00020 * 21 20 19 38 38 H 1.09004 * 109.46563 * 329.99654 * 21 20 19 39 39 H 1.09001 * 109.47006 * 5.05552 * 22 20 19 40 40 H 1.08993 * 109.47614 * 125.05418 * 22 20 19 41 41 H 1.08998 * 109.47077 * 245.05870 * 22 20 19 42 42 H 1.08002 * 119.97065 * 179.97438 * 23 19 18 43 43 H 1.07999 * 120.03513 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.8074 -1.1191 4.0078 10 1 1.8277 -0.4193 5.2205 11 1 1.8279 -2.5198 4.0082 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3469 14 6 2.5885 -0.5216 -3.5557 15 6 1.8794 -0.5262 -4.6763 16 6 2.3726 -1.2609 -5.8596 17 6 3.5904 -1.9410 -5.8031 18 6 4.0455 -2.6292 -6.9069 19 6 3.2981 -2.6379 -8.0793 20 7 3.7642 -3.3309 -9.1971 21 6 2.9227 -3.4466 -10.3908 22 6 5.0951 -3.9428 -9.1771 23 6 2.0871 -1.9571 -8.1403 24 6 1.6246 -1.2710 -7.0384 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.7095 1.1618 3.4844 29 1 2.9174 -1.1206 -1.0287 30 1 2.7589 1.0462 -2.1182 31 1 1.0872 0.6162 -2.5526 32 1 3.5287 -1.0511 -3.5095 33 1 0.9395 0.0035 -4.7227 34 1 4.1733 -1.9313 -4.8940 35 1 4.9856 -3.1590 -6.8625 36 1 3.1191 -2.6063 -11.0566 37 1 3.1500 -4.3796 -10.9064 38 1 1.8730 -3.4400 -10.0972 39 1 5.5316 -3.8310 -8.1845 40 1 5.0118 -5.0021 -9.4200 41 1 5.7324 -3.4506 -9.9117 42 1 1.5089 -1.9653 -9.0525 43 1 0.6839 -0.7427 -7.0862 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663170771.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:05:32 Heat of formation + Delta-G solvation = 51.699597 kcal Electronic energy + Delta-G solvation = -19719.994149 eV Core-core repulsion = 16765.480906 eV Total energy + Delta-G solvation = -2954.513244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.70410 -36.96994 -36.00756 -33.76920 -32.07184 -31.28255 -29.74026 -28.42641 -27.83518 -25.49897 -24.97810 -23.22280 -22.56199 -20.86336 -19.72323 -19.04557 -17.66664 -16.47559 -15.83597 -15.50280 -15.33685 -14.81502 -14.70295 -14.23556 -13.86466 -13.67978 -13.41552 -13.06826 -12.89264 -12.78198 -12.46793 -12.30673 -12.19463 -12.08923 -11.43841 -11.28017 -10.99821 -10.81761 -10.77576 -10.52434 -10.48075 -10.22686 -10.09662 -9.89271 -8.95186 -8.84685 -8.78148 -8.43709 -7.26860 -7.02309 -6.00023 -4.06472 1.23482 1.46138 2.80615 2.91020 3.33002 3.37201 3.40245 4.05612 4.42657 4.61691 4.68779 4.91167 4.98838 5.01210 5.07245 5.25178 5.30155 5.31258 5.33225 5.40221 5.44075 5.57250 5.64284 5.70992 5.90129 6.04636 6.07677 6.16263 6.31338 6.46576 6.58924 6.80525 6.91256 7.03436 7.04984 7.16888 7.19747 7.28032 7.35917 7.54218 7.80610 7.93324 8.30764 8.43015 8.70750 9.04237 9.59200 11.06274 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.037752 B = 0.002530 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.507426 B =11065.520134 C =11580.400626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.210 3.790 3 H 0.001 0.999 4 C -0.518 4.518 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.685 5.685 13 C 0.085 3.915 14 C -0.124 4.124 15 C -0.127 4.127 16 C -0.096 4.096 17 C -0.069 4.069 18 C -0.196 4.196 19 C 0.204 3.796 20 N -0.641 5.641 21 C 0.096 3.904 22 C 0.090 3.910 23 C -0.196 4.196 24 C -0.066 4.066 25 H 0.031 0.969 26 H 0.080 0.920 27 H 0.004 0.996 28 H 0.261 0.739 29 H 0.330 0.670 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.045 0.955 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.119 0.881 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.456 -6.310 -24.509 25.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.103 3.897 3 H 0.018 0.982 4 C -0.557 4.557 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.316 5.316 13 C -0.045 4.045 14 C -0.143 4.143 15 C -0.146 4.146 16 C -0.098 4.098 17 C -0.087 4.087 18 C -0.218 4.218 19 C 0.104 3.896 20 N -0.354 5.354 21 C -0.048 4.048 22 C -0.053 4.053 23 C -0.218 4.218 24 C -0.085 4.085 25 H 0.050 0.950 26 H 0.099 0.901 27 H 0.023 0.977 28 H 0.071 0.929 29 H 0.147 0.853 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.137 0.863 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.807 -6.528 -24.680 25.977 hybrid contribution 1.055 0.045 1.010 1.461 sum 5.862 -6.483 -23.670 25.232 Atomic orbital electron populations 1.21716 0.97881 0.99357 0.99308 1.19128 0.92679 0.92320 0.85588 0.98167 1.21235 1.31480 1.12497 0.90469 0.92261 1.24933 0.95079 0.95025 0.99051 1.69896 1.36632 1.22857 1.23539 0.86568 0.79044 0.79784 0.82038 1.20347 1.21317 1.20185 1.60804 1.32043 1.32927 1.05784 1.21007 0.99579 0.93718 0.90164 1.23384 0.98764 0.98025 0.94097 1.21463 0.99839 1.00914 0.92406 1.18909 0.95470 1.01126 0.94282 1.21104 0.95141 0.94909 0.97555 1.20622 1.01896 1.06564 0.92722 1.17868 0.93230 0.91795 0.86712 1.46226 1.16980 1.58878 1.13331 1.21571 0.95292 1.00982 0.86909 1.21678 0.83638 0.97101 1.02909 1.20558 0.97167 1.04130 0.99927 1.21009 0.98703 0.97033 0.91717 0.94959 0.90122 0.97717 0.92887 0.85304 0.95265 0.91341 0.87538 0.86840 0.85729 0.86019 0.93623 0.91781 0.91351 0.90279 0.92812 0.93209 0.86270 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 9.19 37.16 0.34 -2.84 16 2 C 0.21 5.47 2.60 -68.86 -0.18 5.29 16 3 H 0.00 0.02 7.80 -51.93 -0.40 -0.39 16 4 C -0.52 -14.46 8.59 -34.44 -0.30 -14.76 16 5 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.77 11.32 55.43 0.63 -25.15 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.68 -15.13 6.29 -109.21 -0.69 -15.81 16 13 C 0.08 1.58 5.93 -4.98 -0.03 1.55 16 14 C -0.12 -1.95 9.20 -36.21 -0.33 -2.28 16 15 C -0.13 -1.85 9.51 -37.59 -0.36 -2.21 16 16 C -0.10 -1.30 5.87 -104.98 -0.62 -1.92 16 17 C -0.07 -0.88 9.39 -39.23 -0.37 -1.25 16 18 C -0.20 -2.26 9.29 -39.44 -0.37 -2.63 16 19 C 0.20 2.30 6.54 -83.75 -0.55 1.75 16 20 N -0.64 -5.80 3.40 -187.51 -0.64 -6.44 16 21 C 0.10 0.63 10.09 59.85 0.60 1.24 16 22 C 0.09 0.61 10.62 59.85 0.64 1.25 16 23 C -0.20 -2.18 9.14 -39.44 -0.36 -2.54 16 24 C -0.07 -0.80 9.77 -39.23 -0.38 -1.18 16 25 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 27 H 0.00 0.09 7.45 -51.92 -0.39 -0.30 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.33 7.04 8.22 -39.29 -0.32 6.72 16 30 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 31 H 0.07 1.30 7.11 -51.93 -0.37 0.93 16 32 H 0.11 1.55 6.03 -52.49 -0.32 1.23 16 33 H 0.11 1.58 7.87 -52.49 -0.41 1.16 16 34 H 0.12 1.49 6.16 -52.49 -0.32 1.17 16 35 H 0.12 1.16 5.72 -52.48 -0.30 0.86 16 36 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.06 0.32 8.07 -51.93 -0.42 -0.10 16 38 H 0.07 0.44 6.44 -51.93 -0.33 0.11 16 39 H 0.08 0.53 5.29 -51.93 -0.27 0.25 16 40 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.12 1.08 6.29 -52.49 -0.33 0.75 16 43 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 346.05 15.07 5.21 5.21 Total: -1.00 -30.57 346.05 -9.43 -40.00 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.58 Total: 4.65 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -2.35 Total: -18.93 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -0.70 Total: -47.40 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.57 -9.43 -40.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170771.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.702 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds