Wall clock time and date at job start Mon Mar 30 2020 20:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47032 * 2 1 4 4 C 1.50703 * 109.46949 * 120.00164 * 2 1 3 5 5 H 1.07999 * 120.00006 * 119.99699 * 4 2 1 6 6 C 1.37880 * 119.99979 * 300.00058 * 4 2 1 7 7 N 1.31523 * 119.99707 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00198 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46992 * 59.99617 * 8 6 4 10 10 H 1.48500 * 109.47114 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47008 * 300.00045 * 8 6 4 12 12 N 1.46906 * 109.47004 * 239.99639 * 2 1 3 13 13 C 1.46903 * 110.99684 * 85.00264 * 12 2 1 14 14 C 1.50694 * 109.47049 * 179.97438 * 13 12 2 15 15 C 1.32611 * 119.99805 * 125.00022 * 14 13 12 16 16 C 1.47760 * 119.99931 * 180.27336 * 15 14 13 17 17 C 1.39605 * 120.06466 * 359.45163 * 16 15 14 18 18 C 1.37804 * 119.93196 * 179.76859 * 17 16 15 19 19 C 1.39042 * 120.06573 * 0.50390 * 18 17 16 20 20 N 1.39532 * 119.93590 * 179.72539 * 19 18 17 21 21 C 1.46504 * 120.00429 * 174.29086 * 20 19 18 22 22 C 1.46501 * 119.99982 * 354.28918 * 20 19 18 23 23 C 1.39053 * 120.13550 * 359.74671 * 19 18 17 24 24 C 1.37801 * 120.06458 * 0.02562 * 23 19 18 25 25 H 1.09004 * 109.47123 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47205 * 300.00136 * 1 2 3 27 27 H 1.09008 * 109.46705 * 60.00308 * 1 2 3 28 28 H 0.97000 * 119.99344 * 180.02562 * 7 6 4 29 29 H 1.00903 * 110.99962 * 208.95041 * 12 2 1 30 30 H 1.09006 * 109.47074 * 59.99633 * 13 12 2 31 31 H 1.08997 * 109.47309 * 299.99885 * 13 12 2 32 32 H 1.08002 * 120.00290 * 304.99743 * 14 13 12 33 33 H 1.07992 * 120.00436 * 0.02562 * 15 14 13 34 34 H 1.07998 * 120.03384 * 0.02562 * 17 16 15 35 35 H 1.08004 * 119.96489 * 180.25443 * 18 17 16 36 36 H 1.08998 * 109.47354 * 89.99681 * 21 20 19 37 37 H 1.08996 * 109.46952 * 210.00020 * 21 20 19 38 38 H 1.09004 * 109.46563 * 329.99654 * 21 20 19 39 39 H 1.09001 * 109.47006 * 5.05552 * 22 20 19 40 40 H 1.08993 * 109.47614 * 125.05418 * 22 20 19 41 41 H 1.08998 * 109.47077 * 245.05870 * 22 20 19 42 42 H 1.08002 * 119.97065 * 179.97438 * 23 19 18 43 43 H 1.07999 * 120.03513 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.8074 -1.1191 4.0078 10 1 1.8277 -0.4193 5.2205 11 1 1.8279 -2.5198 4.0082 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3469 14 6 2.5885 -0.5216 -3.5557 15 6 1.8794 -0.5262 -4.6763 16 6 2.3726 -1.2609 -5.8596 17 6 3.5904 -1.9410 -5.8031 18 6 4.0455 -2.6292 -6.9069 19 6 3.2981 -2.6379 -8.0793 20 7 3.7642 -3.3309 -9.1971 21 6 2.9227 -3.4466 -10.3908 22 6 5.0951 -3.9428 -9.1771 23 6 2.0871 -1.9571 -8.1403 24 6 1.6246 -1.2710 -7.0384 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.7095 1.1618 3.4844 29 1 2.9174 -1.1206 -1.0287 30 1 2.7589 1.0462 -2.1182 31 1 1.0872 0.6162 -2.5526 32 1 3.5287 -1.0511 -3.5095 33 1 0.9395 0.0035 -4.7227 34 1 4.1733 -1.9313 -4.8940 35 1 4.9856 -3.1590 -6.8625 36 1 3.1191 -2.6063 -11.0566 37 1 3.1500 -4.3796 -10.9064 38 1 1.8730 -3.4400 -10.0972 39 1 5.5316 -3.8310 -8.1845 40 1 5.0118 -5.0021 -9.4200 41 1 5.7324 -3.4506 -9.9117 42 1 1.5089 -1.9653 -9.0525 43 1 0.6839 -0.7427 -7.0862 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663170771.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:05:31 Heat of formation + Delta-G solvation = 34.546930 kcal Electronic energy + Delta-G solvation = -19720.737945 eV Core-core repulsion = 16765.480906 eV Total energy + Delta-G solvation = -2955.257039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.54368 -38.20758 -37.35172 -35.29328 -33.76009 -32.12084 -31.15975 -29.32634 -28.97642 -27.37654 -26.29082 -24.43820 -23.44654 -21.89589 -21.63772 -20.19960 -18.50531 -18.41214 -16.91795 -16.69450 -16.39906 -15.93954 -15.84914 -15.62654 -15.27087 -14.88985 -14.65026 -14.46428 -13.80581 -13.71135 -13.66708 -13.34851 -13.26193 -12.93550 -12.83526 -12.80084 -12.72195 -12.53871 -12.26666 -12.17323 -12.14623 -11.70412 -11.49299 -11.36792 -10.89786 -10.57203 -9.84443 -9.82311 -9.02943 -8.13118 -7.92711 -6.27440 0.23387 0.57627 1.42989 1.45455 1.53057 1.72268 2.27160 2.42483 3.11030 3.15388 3.74202 3.85860 4.00216 4.04611 4.22080 4.27051 4.46191 4.51882 4.54103 4.55468 4.61342 4.73037 4.78913 4.79865 4.85330 4.86550 4.91478 4.95851 5.07947 5.20143 5.21533 5.31288 5.45654 5.47975 5.59574 5.67088 5.83294 5.88591 5.94330 6.07673 6.22005 6.36957 6.47999 6.56912 6.77136 7.00307 7.42789 8.92806 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.037752 B = 0.002530 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.507426 B =11065.520134 C =11580.400626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.213 3.787 3 H -0.030 1.030 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.011 3.989 7 N -0.918 5.918 8 Si 0.966 3.034 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.684 5.684 13 C 0.091 3.909 14 C -0.147 4.147 15 C -0.106 4.106 16 C -0.128 4.128 17 C -0.075 4.075 18 C -0.208 4.208 19 C 0.205 3.795 20 N -0.644 5.644 21 C 0.089 3.911 22 C 0.083 3.917 23 C -0.204 4.204 24 C -0.067 4.067 25 H 0.027 0.973 26 H 0.058 0.942 27 H 0.021 0.979 28 H 0.263 0.737 29 H 0.333 0.667 30 H 0.023 0.977 31 H 0.063 0.937 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.139 0.861 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.140 0.860 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.091 -7.763 -26.249 28.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 H -0.013 1.013 4 C -0.578 4.578 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.315 5.315 13 C -0.038 4.038 14 C -0.166 4.166 15 C -0.125 4.125 16 C -0.130 4.130 17 C -0.094 4.094 18 C -0.230 4.230 19 C 0.102 3.898 20 N -0.356 5.356 21 C -0.053 4.053 22 C -0.059 4.059 23 C -0.226 4.226 24 C -0.085 4.085 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.151 0.849 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.144 0.856 35 H 0.156 0.844 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.157 0.843 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.460 -8.000 -26.468 28.184 hybrid contribution 0.868 0.455 1.317 1.642 sum 6.328 -7.545 -25.150 27.010 Atomic orbital electron populations 1.21549 0.97749 0.98825 0.99057 1.18955 0.92810 0.90817 0.86948 1.01283 1.21565 1.31843 1.12770 0.91592 0.92190 1.25783 0.95169 0.95721 1.02157 1.70027 1.37415 1.24031 1.24281 0.85496 0.78747 0.78597 0.78082 1.19478 1.20858 1.19638 1.60720 1.32314 1.33257 1.05207 1.20945 0.99323 0.93416 0.90108 1.23104 1.00016 1.00084 0.93365 1.21613 0.99233 0.99240 0.92378 1.18939 0.96650 1.02900 0.94537 1.21238 0.95035 0.94952 0.98163 1.20832 1.02783 1.06764 0.92604 1.18097 0.93100 0.91273 0.87321 1.46541 1.17892 1.57938 1.13204 1.21755 0.95082 1.02294 0.86216 1.21848 0.82812 0.97978 1.03296 1.20805 0.97481 1.03901 1.00428 1.21229 0.99016 0.96820 0.91446 0.95418 0.92321 0.95970 0.92785 0.84949 0.95928 0.91896 0.86583 0.86443 0.85607 0.84389 0.92898 0.89938 0.91212 0.90394 0.91362 0.92068 0.84264 0.84644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.91 9.19 71.98 0.66 -5.25 16 2 C 0.21 11.34 2.60 44.17 0.11 11.45 16 3 H -0.03 -1.77 7.80 -2.39 -0.02 -1.79 16 4 C -0.54 -30.46 8.59 25.60 0.22 -30.24 16 5 H 0.06 3.30 7.62 -2.91 -0.02 3.27 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -53.93 11.32 21.45 0.24 -53.69 16 8 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 12 N -0.68 -30.69 6.29 -499.45 -3.14 -33.83 16 13 C 0.09 3.46 5.93 85.55 0.51 3.97 16 14 C -0.15 -4.64 9.20 24.52 0.23 -4.41 16 15 C -0.11 -3.04 9.51 23.63 0.22 -2.81 16 16 C -0.13 -3.38 5.87 -20.10 -0.12 -3.50 16 17 C -0.08 -1.87 9.39 22.50 0.21 -1.66 16 18 C -0.21 -4.50 9.29 22.36 0.21 -4.30 16 19 C 0.20 4.20 6.54 38.30 0.25 4.45 16 20 N -0.64 -9.98 3.40 -747.15 -2.54 -12.52 16 21 C 0.09 0.92 10.09 127.77 1.29 2.21 16 22 C 0.08 0.91 10.62 127.77 1.36 2.27 16 23 C -0.20 -4.14 9.14 22.36 0.20 -3.93 16 24 C -0.07 -1.51 9.77 22.50 0.22 -1.29 16 25 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 3.31 6.07 -2.39 -0.01 3.29 16 27 H 0.02 1.02 7.45 -2.38 -0.02 1.00 16 28 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 29 H 0.33 14.43 8.22 -89.69 -0.74 13.69 16 30 H 0.02 0.89 8.06 -2.38 -0.02 0.87 16 31 H 0.06 2.42 7.11 -2.39 -0.02 2.40 16 32 H 0.12 3.39 6.03 -2.91 -0.02 3.37 16 33 H 0.12 3.20 7.87 -2.91 -0.02 3.18 16 34 H 0.13 2.97 6.16 -2.91 -0.02 2.95 16 35 H 0.14 2.41 5.72 -2.91 -0.02 2.40 16 36 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.08 0.56 8.07 -2.39 -0.02 0.54 16 38 H 0.07 0.71 6.44 -2.39 -0.02 0.69 16 39 H 0.08 0.87 5.29 -2.39 -0.01 0.86 16 40 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.14 2.17 6.29 -2.91 -0.02 2.15 16 43 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -65.02 346.05 2.87 -62.15 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.26 Total: 23.75 kcal Atomic # 6 Polarization: -38.02 SS G_CDS: 6.03 Total: -31.99 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -5.44 Total: -100.03 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -65.02 2.87 -62.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170771.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.700 kcal (2) G-P(sol) polarization free energy of solvation -65.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds